RNA id: XM_026921398.2


Basic Information

Item Value
RNA id XM_026921398.2
length 6414
RNA type mRNA
GC content 0.46
exon number 23
gene id si:dkey-65j6.2
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23152604 ~ 23171751 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggagagagagagagagaaggagagagagacgaggagagagacagagagagagacagagagagagaaacggagagAGAGTCAAGCTGTGTGCTGCTGCTTGCTTTCCTCAGAATGAGGGAAATTATGGAGTTTACGTTTCTATGTGCAGGACCAATGAAGACAGACCTGACACTTCTGACTCGATAAAACTCATTCAGGCCAAAATGGACCCAGACTCCCTGGACTCCTCCATCCagagctctctctctgctctctacCCTCCATTCGAGGCCACAGCTCCCACCATCCTCAGCCAACTATTACATGTCATTGAGGGTCGTTATGGCGGCGATTCCCTTCAGTGCCTAATCGACTTCCTGATCCCAGCCAGGCGACTCCTGGAGAGGGTGCGCCAGGCAGCTTGTGTGCCATATTCGGACTTGGCGTTCCATTGTTCGGGCTGGCCGCTCTGCCTGTATGACCACGTTATAATCCATCTCGCTCCCATCAACCCACTGCTGCTCTCGATTGAAGACTTTTACCTACAGGTGGTGCCGTTTGAGAAGCAAGCAGCCCGTATTGTGGTTCGGAGCCTGTTGGACGAGGAGCAGCATGATTTGGAGGAAACTCCAATACCAGAGAACTCATTTAGCCGTATTTTCACTCAGGACTGGCTAAAAGAGCTCAACGTAGGCAGGCATGATGAAAGGCTGCTCAGTCACTGTGTGCTGGCTACTGAGCAGTGCATAGTGAAGGTGTCTTGGGATCAGGTGGCTTACCCAGAGTTTGAGAACCAGCCACAGCTCATGGATTCTTCTGGTAGTTCTAATCAACAGGAGCCTTTGAAAGGTCCTTCCTGGCAGGGTTATTCAGTTGAAACCAGGATCTGTCCTGCTAAGGATGGTATTGCAGTGTCTTTGTGTTTGGTAGACAGCTCCAGGCAGAGTGAGATGAATCAAGCCATGCCGGAGATGAGGCCACTTGGCTGGGTGTCTCCTAATATTTGGGACAGTCGCAGTAAAGGGTGTTTTGTGGATGAGGATGTAAACGATGTGGACCTTATCAAAGGAAAGGATGATTTAGGAGACTCTCAGACATGTGCTCAACCTAAAACTTGTTTGCTAAGGCTGCACAGGGTCACACCTCCTGTTGGCCGTGATCATACAGCCCATGATCGTCGCACCTGTGGACGTACTGTAAGGTTTGCAGAGCCGCCTTGCACTCCTTGCCTGAGGAGGAAGCATGGACAGGGAACCAAGAACCAAGAATGCCGCTACAAGGAGTACTGCAGGGAAGAACAATGTTCTGTTAGAATTGAAAATAGGCAAAAAGAACCAAATCTCTCTGAGAGAACAGCGAGGACAGACCATCTCCACAGACCAGTTCAGAAACAGTTTCCACAGATTcaaactataaataataactcCAATGAAAGTCACAGAAAAGTTCCTGATAATTCTCAGGGTACCTTTGCAGACATGACAGAACTGAGCGACGGAACCATCGCCTGTATCACCCCAACCGTGGATGAAACAGAATCAGAGAAAAGTCACATTGTTGTCCAAGGATATCCCAGTGAAGGAAAAACAGACAGCAAAACAGAAATGATCCCAGGGTTACGTATAGCTCATGGAAAAAAGACCACAACTTTTGGACTTGTGTCACCAAAGTTAAACAGACGAAAACCACCAACGCAAGAAGAAGGTCAGGACCATAAAAATCTTCCCCTTCTTGCTAAGGGAACttgcacaaataaaactgtatcCTTATTACACCATACTGATATAAATAAGCCTGGAAAGAGATCACCATTCCCAGCTCCATCAAAACCAGAGACCTGCCTCCTGCAAGCAGGACTTTCTTGCCTTACAGGTGGCAGAGATTGCTCAAACAGAGTCGTAGTGGAGGTTTATGGTGATCACCAGCACTGGAGGTCTCCTCTGCTTTCCAACCAGGCACTCTCTAAACTTCTGCTTTATTTCCACACCATCATTAGgaaggaggagagagagcttGGAATGACCATTGTGTACGACAGCCGTAAGATACCACCACACCCAGAATTCTCTGAAGCTCTGCAGATGGTGCAGGAGCAGGATCCAAAAGCAATCCACTGTGTGCTACTGCTGATCAATAAGGAGAAAAGTCACAACCCCAAGAAATACCCTGGAGACATGGAGGTTGTGACATCCCTCAAAGGCCTTCACAGATATATAGAGTACAGCCAGCTGAGCCCGGCCCTAGAAGGCACTTTTCTTTACAGTCACAGAAACTGGCTGCATCTTCATCAAGAACTGTATCCATTTGTGTTTGCCATGAAGGAAGCAACAGATTTGCTTCTAGAAGCCATAAGGAAGTTAGAAGGGGTCCGTAAAATAGACACTGCTCAGgATGTACAGCAGTGTATTAATGACCAAAGGATTCTGATGAAGGATGTGCTTGAAGACACCCATTTGGTTACCTTACAAAGGGAAGGCGGAGCCTTGTTGGCCAGGTTGAGAGGGGAGAGTGATGTAAGATCAGCACACTATGAGACAAGCTGTAATGTCATGGATACTGTGGATTCCCTTTACACTGAGGTAGAGGAACACGTCCATGTGCTGGTGAGAAGGTCCAACATATCATTTCAACACCTTGGCTTCTTGCTACATCTCAGGAAGATGGAATCAAGGTTCATGGAGATAAAGGAGTGGTTTGATGTGGAAGGAGAGAGACGAATACTCGAGGCTGAATCTGCAGAGGAACCAAGCAGGAGCTTTGAAGAGATTCTCCAGTGTTTAACCACTGTCCTCTCTGAAGCTAATgaacATAAGCTTCAGGCAATGATGTTACTAAATGAAGCAGAAAGCATCCAGGGACCAAACTATCCTGAGACAGAAGTGTTCCACATAATGATATCCACATTCAAATCCAACTTGTCTGAATTCCTGTCTCAAGCAGAGCAGTATTGTGATGAGCTGGAGACTACGCTAAATTTGTGCCACTTCTGTGAGAGGGCAATTGAGGTGGCCATAGACTGCTCTCAGCAATTGGAAGAAGAGAAACTGCAGTGCATGAACCATCAAGAGAAATGGGCTGCTCTTCAGGGATGCCACGAAAAGCTTAGCCAGTTTTCCCCTGAACTCTTCCAGGAGCTAAAGACCCAGGCCTGCTCTCTGCACAACCCCTGGGGGAGGAAGGTGTGGAACATAACTTGGTTAAGGTGTCAGGAGGTCAGTCAGCAGTTGGAGGACACTCTGCAGGAGCTGGAGCAAGACCAACATCCTTCTGTACCTGTATCGTTACAGTATGAATGGCATGAACAGGAGAGCACTGATGGAGggccacagcttccacagcctGACACACATCAGAACTCACTTAAATGCCCAGAAGTCAAGGTCAGGCAGAACCGAGACAGCATCCACGGCACGGTGAGCTGCTTCAACATCAATTTCAGGCAATCCCGTAAAGGACGTAAAGGGTCCAAAATGGCTCCAGTTGCAGATTCTGACCAGAACTCACCCAGAAAAACAGCCCATGACCACAGGCAGACAACAGTTGCAGGCTCGGACACAGTTGGTTGCCAGTGGTTCCATTGGCACCAAAACTCAACCAAATATACTAAGGAGGACTCTTCTTCAGCCTCCAGTTCCTTTAAGATTCAGATCCTACCACCTACCTTGACTGAATCTAAGACCTCAGCACCCATCTGCTCCAATTCCCAAATCTCAGGACCTACCTGCTCTGGAGCTCAGACCTCAGTGCTGCAAAACCCAATACCACTTTCTGGTAGCTTATGTTTGGAAACTTCGGACTGTGAGGCAAGGCACCCTGAAAATACTTCCCACTCTGAAGAGACTGCCAGCTGGGGGAATGAGGCAGCAAACACCCTGTCAAGTCCTGGCATGGAAAGCAACACTATGAAGCTGCAATGTATCATGGAGGAATTGTTGTTGACAGAGCTGGAGTATGTAAGATCTCTGGCTTACATCCTGACTCATTATCTCCCCCTGCTGGCCCAGCCAGATGTGCCTCCAGACCTGAGAGGCCAGCGTGGAAGGATCTTTGGGAACCTAGAGAAACTATATGACTTCCACTGCCATTACTTCCTGCAGGAACTTGAGGCTTGCCGGACAGAACCACTTCGGGTGGGCCGCTGCTTCCTCAAACATAGAGAGAATTTTGGGCTGTATGCTCTCTACAGCAAGAACAAGCCTCAGTCAGATGCTTTGATCCAACAGCATAAGTTCTTCAAGTGTAAGCAGCTGGAGCTGGGAGACAGCATGGATCTATCCTCCTACCTGCTGAAGCCAGTGCAGAGGATCAGTAAGTACAGCCTGCTGCTGCAGGAGATGCTGGAGGAATGTGGAGCGGCACATGATGCAGAGCGCCTGGAGATCCAGGGTGCCGCGGAGGTGGTCCGATTCCAGCTACGCCACGGAAACGACCTGCTTACCATGGACGCCATCCAGGACTGTGATGTGAACTTACAGGAACAAGGCCAGCTAATTCGGCAAGATGAGCTCTATGTGACATTTCGCAAGAAGCGTGTTTTGCGACGAGTGTTTCTATTCCAGGACCTTATTCTGTTCACCAAGGCGAAGAAAACACACCGTGGAGATGTTGTGTATGTCTACAAACAGTCTTTCAAGACATGTGACATTGGACTAACCCAGAACTGTGGACAGAGTGGCTTGTGCTTTGAGATCTggttcagaagaagaagagcccAGGACACGTATACACTTCAGGCAGAGAGGAAGGACATGAAAGAGGCCTGGACTGCAGACCTGGAGCGCATTCTGTGGGAACAGGCCCTGAAGAACAgagAGTTGCGGAGACAGGAGCAGGTGTTCATGGGAATGGGTAGTAAACCTTTCATGAAAATTCAACCCAGAGAAGCAGCCGTCCATGACAGGACCATCACCTGCTTCCTGCAAGAAGGAGagatTGAAGGATTAAAACTGCCAAATCTCACAACACCCAGACTTCAGAGTGACACACCGCTGCCACGACCAGAATCGATCGGCTCCACCTCAGGCAGCCAATCGTCTTCCTCCTCTGGCCGAGGCTCTTTGTCCCCTAGCGGTTTCCGTGAAAACCCGGCGCCTGAAAACAGCCACGGATCTCAGATACCTCAGATCAGCCATCGGGGCAATAGCCACGcGAGCACAGACTCTCCGGGTCGATACGGATCGCGTGTGTGTGGTACCTCGGGTTCCTGCAGTGCTACAGGAGGGAGGATTACGACGCCTGCTGGTACCCAGCTGCAGCACACCTCACCTGCCTTATCCAGGAAAAAAGGCCTCAGTAGCACTGCACACAAAATACACGGCTCATATTTTGCAGAAGGATAGACAACGGATTTGCTCGCTGCTTAATGGTGCTGGTATTTGTTCTGAAATATACCGTATGTTTGTCATCTTTTTCAACACACTAATTTCCATACAACTTATAGTGAGCCCCGTTTCAGTAATTCACTTGCTGACTAGGAACCAAAAGCCAGCAAATCtttctaaataaacatctcagtgATAACtgaattttaatgtaaatttaacCTCTGAGACTGAGCCTTGGttgtataaactataaaaactaATTAGCCAAGGCCCAAATGGATATGATATTTAATCAAAGCACATGGAGTCAACTCCAGAATAATTGGCatcctttattaaaaatatttatattatgcaaaataaacatcacacacaataattcaaatcacgtttttaaaaattatacttTCTCTTAACATATTTTGCAAAGATCTTGAAACCCGTATGGAATATATAAAGTAACAGTATATTGTCATGCTTGAAAAagatatatttctatataaaactatatattattTCTAATTTGCTCTCGGTTCTTTGGAAGTTGTCTAATAGCATATCCTGTTTCTTCTGTGGGGAATTGATATGATGAGATCATGTAAAATCTAATCATCATACGTCAGGTCACCATGGAGAAAAGCAAAACTCTTTCAGAAAAAAGTTGTCGCCCTGCACACATCAGGTAACTGATCATTCCAGAGAAGTGTGTGCAGGGTTACTGAAGGTTACACCAGAAACGAGTCGGAAACACTTTCACACAACAAAAGCATTCATTAAAGCACAGTCCATATGCTAATATCATATTTAACGCTGGAAAAGGTGTTTACTGAAAGAATACTGTATGAATAAATGATATGAATTAATGTTACTGAATGGAGGCACTGGTTGGAGGAGTTTTATAAATGTCGTATATTTTTGCATGGAGGGATTTTCTAAAGACAGCctttaaatgtcaaaataaCTGTTATTTTACAACGCAGCaactattttttaaacactttttctatttgttgaattaaataaaataatgtacattGCTCTTGTATAGTATTTTTCTGCATGTGTATAAtttaatagaaatagaaaagaacatcacatttatttacaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307254 lncRNA upstream 88035 23026446 ~ 23064569 (+) True G259540
TU307252 lncRNA upstream 130156 23021970 ~ 23022448 (+) True G259539
TU307249 lncRNA upstream 136708 23013384 ~ 23015896 (+) True G259536
TU307196 lncRNA upstream 310865 22839217 ~ 22841739 (+) True G259498
TU307080 lncRNA upstream 566795 22584557 ~ 22585809 (+) True G259403
TU307418 lncRNA downstream 105683 23277434 ~ 23277909 (+) True G259690
TU307732 lncRNA downstream 136004 23307755 ~ 23308592 (+) True G259962
TU307742 lncRNA downstream 160929 23332680 ~ 23335335 (+) False G259968
TU307745 lncRNA downstream 160929 23332680 ~ 23348937 (+) True G259968
TU307756 lncRNA downstream 173111 23344862 ~ 23362290 (+) True G259978
XM_026920419.2 mRNA upstream 141143 23006566 ~ 23011461 (+) True myl9a
XM_026920077.2 mRNA upstream 200674 22859162 ~ 22951930 (+) True scube3
XM_026920078.2 mRNA upstream 200674 22859162 ~ 22951930 (+) False scube3
XM_034312177.1 mRNA upstream 301176 22835748 ~ 22851428 (+) False LOC113530963
XM_034311676.1 mRNA downstream 506 23172257 ~ 23179323 (+) False tgm2a
XM_034311677.1 mRNA downstream 1090 23172841 ~ 23179323 (+) True tgm2a
XM_026921432.2 mRNA downstream 14740 23186491 ~ 23195255 (+) True tti1
XM_026920165.2 mRNA downstream 147610 23319361 ~ 23331266 (+) True znf341
XM_026920166.2 mRNA downstream 147610 23319361 ~ 23331266 (+) False znf341
XR_004579671.1 other upstream 473054 22671625 ~ 22679550 (+) False LOC113530514
trnal-uaa_2 other upstream 840716 22311806 ~ 22311888 (+) True trnal-uaa_2
TU306357 other upstream 1610350 21538254 ~ 21542254 (+) False LOC117599233
TU306101 other upstream 1921733 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU305940 other upstream 2247531 20903147 ~ 20905073 (+) False ubxn10
TU307769 other downstream 199996 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other downstream 199996 23371747 ~ 23383653 (+) False LOC117599309
TU307780 other downstream 215787 23387538 ~ 23389314 (+) True G259993
TU308306 other downstream 860476 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 1096826 24268577 ~ 24269267 (+) True G260483

Expression Profile