RNA id: XM_034312178.1


Basic Information

Item Value
RNA id XM_034312178.1
length 3169
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC113530963
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22834522 ~ 22851428 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacagagagagcctGAGTATCTGTTGATGCAACATTTGTCTGCTAGCTTGTGTTTGTGGTCACCTTTCTATTAGACGTGTATCACTACGTAGCGTCCACGCGGATGTTCTAGCATACTTAATGTAGTGCGTCTACAGAGGGAACATGGAAAGtgtAAACAGAAGAAGGAGGAGCTCGTTCTGTTCCTGCACCTCGTCTGGCATTTAAAGAGGTGAAATAAGAGCGAAATCTTTGCACTAGCTCCACTTTTACAGGTGTGGCACCTTTGCTCCGGGAAGGGGTCGCTCGATTCTTCATCGCTTCTCACGTGCAATGCGGATGCATGACTCCTGGCCATGCGACTCTGCGTCAGGATCGTCACTCAGCATGAACAGTGCAGGCAGCTGTGACAGCATGATCAGCATCAACTCGGGCTATAGTGACAACAGTATGGAGCATCTCTCTGCTGAGGAGCGCGCATGTCTCATGTTTCTGGAGGAAACCATTGAGTCTCTGGAGGCGGAGGACAACAGTGGCGTGTCAAATGGTGAACCAGACCATCCGTCTCGCAATCTGACAAATAAGATGGCTCACCTTAGCTCTAGTAGCCAAGTTAATCGAGAGGAGCTATCAGTCCATGACGATCCCAATAAAGTTTTGGGGAAAGACCATAAACCCCACAAATTGCTTGTTCCAACTCCACTAGTTTTAGCCAACGGCAATgccaaattgctgaaaaaaactGATTTCTCCACTACTGAACAAAAACCAGCTGTACTGGTTAACACACCTAAAACCGCTGCAGTAAACTCTCGCCAGTCTCCAGAGTTCCTGACTTCTGCAGATGGAACTGCTATATCAGCTCCAAATCCTGGGAAACACAAACCAAATGCTCACCCACCCAGCGATGTGACTGACTTGCCTCCTTCTTTTATACCTGAGCCTCCAGTCAAACCTGACTCTTCAAGTGGTGCTATAGCCAAAGACAACGCTCCTAAGAGTAATATCGATCCAAGGTCAGATCAGAAGCACAAGAGTATTTCATCCGATATGCCAATGGAGCTGCTTCCTCCTCCTTCAGACTTTATGGATGAGCCAGTACTCCCACCAGTACTCCCACCAGTACACACTCTGCCAGCAGCACAAAACCAACCCCAAACCTCAACTCAACTTTCCTCACAGCTTGCATCCCAATTCCCATCACAGCCATGTCAAAGTGAAAGCATGCCAATCGCCCCTCCTCCAGGTTTTGATGGACACTTCGAAACAAACAAGCCTCTAACACCACTGTCTACATCCTCAAGAGGACAGCTGTCGCCAAATGACCTAGACAAGTTGCGTAAAAAAGCGTCAATGAAGAAAGCCCCAGAAAAAGTACCAGTAGTTCCAGCAAAATCTGGCCATAATGTGTCAGACCAGACAAATTCTCCAACCTTTGGTCCAGATACCAGTGCATTCACTGTAGTGGAATATGGAGAACCTAAAAGCCCACCCATTGTGGCACCCAAACCCAAAAAACTGCCTTCCAGCATTGTCCTAAAAAGCCACAAAGATGCAACACCAGGTCATTCCCTCGTTTCACCAGGTGATCGTATGATGATAAACCAACAGAAGGTTCACCAGGAAGCTCTGAAGAAACTAGGCTTGCTGAAGAGTGGTGAGTCCGACCCAGGCCTCTGCCCCAGTCCACCACACAAGGCCTCTCCACAGACTTCCTTTAACACGAGCACTTCTGCAATGTCACATTCTGCAGAACCTACTGCTAATTCTGTGCTTGTGCATGCCGAGCACCATGCAGTAACTGAGGCACAaggaaaaacagatttttcatttttacccGTACACcctgaaaaaggagaaagagaaaatctgTTGATCACAAGGGCGCCAAGTCCAAAACCCTTTGAAATGAAATCGGCGTCCTTGGAGCGATCGGGCGTAGGTCTGAAAAGCCTTACACTCGAGAATCCCTCACAGTTAACAGGCCAGGAAGAGAGTCCCGGGAATGTGGCAGTTCCGCTTGGACATCTGCGAAATAACCGATCTCAACCTGCTTCTGTGGGAAGCTGGAAGGACTTCAGTATTGACCAGATACCTTCTGAATCAAACAGAgaaccagagctcaggagatCTCTGCCCAACCCTGCTCCATCACTGGCACAGCTGAAGGTTGAGCCCCAGAAGTCTCTTCGGTCACATGGCATCAGCGTGGTCATCTCCCCACAGAGCAACAACGGCGAGGATCGCAAGCAGGCTCTGAGGAGACTGGGACTGATCAAAGACTAAGCTTCAAAATGGTTTCCCAACAAACTGTATATTGGACCTCCTGATCAATATTACTTCTAAAAGCAGGAATCCTGATTTAGGATCAGTGTATATCTTTTACTTTCTAATCATTAGACTGGAATGGGGAGACTGTGGTGTAGCACTTTTACTCTAGACACAGATttccaaccctggtcctggagaaccccctgacctgctaatcagctaattaacatcccttcctgagttgaagtgggtgtgttacagcagagaaaacactagaATGTGTTAGAACAGGGAGTTCTCCAGGATAAGGGTTGGGAGCCTGTCCTGTAAGATGTAGTTACAAATGGGTCTCTGTATGTACACTGGACGTTTAAGAAAGGTGCTGTATGAAAACAGTGCCAAGGACATTCTTTGAATTCTTGGACGTTCTGGACGTGctggaacttttttttactttagtgGATAAGTGTAATATTTAGCAAGTAGACATTAATTGTTAATGTTAAGACATTAATTGTGGATAAATTGTGATTCTACTAGTGTGCCTGCTGCTACATTGTTTCTAGCTGAAGGATCTGTTTGGATAAGTGAAGGATAATTACAAATGTCTTTACTAAAATGCTTAGTAGTAAGTGTTGCCATTAGCAGACAGCCCTTGCAGTCATAGCGAGCAATTAccctactgttttttttaattagcgaGGTCCTCGTTATTGAAAATAAGTGCTAGAATGCATTTGACACCAAAGCTCTGTTTGAACATTGCTTAGCAATGATATTCAAACTGTTCCTAATTGTCCTACAAACCTTGTTTCAAGTATACAGTTATTCTCTTTTGAACAGCACTTTATTAtgcatgtataaaaaaaactattaatacaatctttattaataaacttCTCATTCTTGATTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307080 lncRNA upstream 249941 22584557 ~ 22585809 (+) True G259403
TU306925 lncRNA upstream 332845 22502687 ~ 22502905 (+) True G259268
TU306924 lncRNA upstream 354650 22480557 ~ 22481100 (+) True G259267
XR_004579757.1 lncRNA upstream 605070 22227964 ~ 22230680 (+) True LOC117599300
TU306766 lncRNA upstream 684951 22148905 ~ 22150799 (+) True G259131
TU307249 lncRNA downstream 161956 23013384 ~ 23015896 (+) True G259536
TU307252 lncRNA downstream 170542 23021970 ~ 23022448 (+) True G259539
TU307254 lncRNA downstream 175018 23026446 ~ 23064569 (+) True G259540
TU307418 lncRNA downstream 426006 23277434 ~ 23277909 (+) True G259690
TU307732 lncRNA downstream 456327 23307755 ~ 23308592 (+) True G259962
XM_026921253.2 mRNA upstream 52289 22775731 ~ 22783461 (+) True stk35
XM_026921443.2 mRNA upstream 79817 22745066 ~ 22755933 (+) True gmeb2
XM_026921444.2 mRNA upstream 79817 22745072 ~ 22755933 (+) False gmeb2
XM_026920957.2 mRNA upstream 91725 22742054 ~ 22744025 (+) True LOC113530713
XM_026921103.2 mRNA upstream 100727 22721758 ~ 22735023 (+) True LOC113530788
XM_026920077.2 mRNA downstream 7734 22859162 ~ 22951930 (+) True scube3
XM_026920078.2 mRNA downstream 7734 22859162 ~ 22951930 (+) False scube3
XM_026920419.2 mRNA downstream 155138 23006566 ~ 23011461 (+) True myl9a
XM_026921398.2 mRNA downstream 301176 23152604 ~ 23171751 (+) True si:dkey-65j6.2
XM_034311676.1 mRNA downstream 320829 23172257 ~ 23179323 (+) False tgm2a
XR_004579671.1 other upstream 156200 22671625 ~ 22679550 (+) False LOC113530514
trnal-uaa_2 other upstream 523862 22311806 ~ 22311888 (+) True trnal-uaa_2
TU306357 other upstream 1293496 21538254 ~ 21542254 (+) False LOC117599233
TU306101 other upstream 1604879 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU305940 other upstream 1930677 20903147 ~ 20905073 (+) False ubxn10
TU307769 other downstream 520319 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other downstream 520319 23371747 ~ 23383653 (+) False LOC117599309
TU307780 other downstream 536110 23387538 ~ 23389314 (+) True G259993
TU308306 other downstream 1180799 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 1417149 24268577 ~ 24269267 (+) True G260483

Expression Profile