RNA id: XM_026921409.2


Basic Information

Item Value
RNA id XM_026921409.2
length 1902
RNA type mRNA
GC content 0.53
exon number 10
gene id kansl2
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20100999 ~ 20109212 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGCATTCGATTGGTGGTCTTTGCCGTTGTAAGTAACGGAGCTTCGAAGTCAGCGACTGTAGTGTTAAATATTGTAGCCCGGATGAACCGGATTCGGATCCACGTGCTGCCGTCCAGCAGGGGTCGAGCGTCGCAGGCCGCGCGCGCCCACGAGCCCCAGACGTGCGCGTTCACGCAGAGAGCGTGCACTCAGCCTCGCATAGACGGCTGGGACTTCTGCATCAAGCACATCCTGGAAGACAAAAACGCTCCATACAGGCAGTGCAGCTATGTCTCCAGTAAGAACGGCAAGCGCTGTCCCAATGCTGCACCAAAACCAGAGAAGAAGGACGGGGTTGCATTTTGTGCTGAACATGCACACAGGAATGCTTTGGCGCTGCAGGCACAGATGCGCAAGGCTTCCTCCGGACCGTCCCCTGAGGTCCTGCTGTCTCAGCTCAGTGGCTACAACAGGACGGAGTTGGGAGCTCTCGGCCAAGATGGCCGCAGTGAAGCGAGTCGCATACTAGATGAAGACAGCTGGAGCGAAGACGAGCAGGATCCAGTGGTGCTGGATCAGACGTGGAGAGGAGATCCTGACAGTGAAGCGGACAGCATAGACAGCGACCACGAAGACCCTCTCAAgcatgcTGGGGTGTACACTGCTGAAGAAGTTGCTCTGATCACACGTGAAAAGCTCATCAGACTCCAGTCACTCTACATAGACCAGTTTAAGCGTCTGCAGCACttgctgaaggaaaaaaagagacgcTACTTGCATAACCGCAAGATTGAGCACGAAACAATAGGCAGCAGTCTTTTAACAGGACCTGAGGGTCTGTCcatgaaagagagggaaaatCTGAAGAAGCTGAAGGCTTTACGTCGCTACCGGCGGCGCTACGGAGTGGAGGCTCTGCTACACAGGCAGCTCAGGGAGCGCAGGCAGGCCGTTACTGAGGGAGGAACACCTCAGACCCACTCAGTACGCCCCAGCCAGAGGTGCATTTCCTTTGTGGAGGGGACGCGGTGTTCAAACCCCTGTCTGCCAATGACCCGACACTGCGTGTCTCATATTTACCAAGACAGTAGCCAGGTGTTGTTTAAGATGTGCCCAGGCCTTAAGGACGTGCCCTGTGACAGGCCGGTGCACATGGGCCAGTCAGAGGAGCCACGATGCCCGCTGCATCTCTCCCTGCCTCCCCCCATGTACCAGCCTGAGCAGGAGCCACTGGCGCCGGAGCAGCTATCATTAGCACCAACAGACATGTACCTGAGCGCTGCCGAGCTTCAGCCCACAGAGAGCCTGCCCCTCGAGTTCAGCGATGTACGATTAACTTCATTTGGGGTCGTTGGTCATCTAGGATGTCTGTTGAATGACAGGAATACAGATCTGGATGTGGTAGGTGATGAGGAGATGCAGTGCCCTCCATCACCGCTGCTCTTTGACACTGCCCTGGCGCTGGAAGACCAAACCATCCGCGCCATTGCTGAGGCTCCTATGGACATCTTGACCTCAGGACAGGACCCCGATCTCTCAGAGACAGAAGACATGTCCACAGCAGACCAGGCTGTGTCGGAGGTATCTGAAACAGCAGGAGATGAGGATGCCACAAAGAATTCATCAAAGGACCCTGACACAATAACAACAGTTGGCACATCCTGAGCACCTTGTGCACTGATTTTCTCAGCTGTCTACAGACTTTTACAGAACCTTCTGCACTGGTGTCCGATCAATAGCCATATTTAACAGAGCCTTTTTTTGTGGAGGAAATGTTGCACcttatttatagaaaatgttCTGATGTATATTCCAAAAGCCTTATCGCTTGGGGAATGAGTGCTAATACATTACTTGTAGGCAACATGAATTTGTTGCTTTCTTTGGAAATAAAACGGAAACTGTGTTGCCCCGGTCTGGAA

Function

GO:

id name namespace
GO:0000123 histone acetyltransferase complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403186.2 lncRNA downstream 43093 20051421 ~ 20057906 (-) True LOC113530857
TU305265 lncRNA downstream 486320 19611920 ~ 19614679 (-) True G257880
TU305254 lncRNA downstream 509869 19586328 ~ 19591130 (-) True G257870
TU305250 lncRNA downstream 519317 19580212 ~ 19581682 (-) True G257866
TU305220 lncRNA downstream 621267 19479524 ~ 19479732 (-) True G257838
TU305425 lncRNA upstream 19695 20128905 ~ 20129112 (-) True G257980
TU305460 lncRNA upstream 34815 20144025 ~ 20144249 (-) True G258003
XR_003403139.2 lncRNA upstream 205152 20314362 ~ 20331611 (-) True LOC113530344
TU305690 lncRNA upstream 254845 20364055 ~ 20373180 (-) True LOC117599243
XR_004579708.1 lncRNA upstream 260239 20369449 ~ 20371300 (-) False LOC117599243
XM_026920675.2 mRNA downstream 2012 20073860 ~ 20098987 (-) False nckap5l
XM_026920676.2 mRNA downstream 2012 20073860 ~ 20098987 (-) True nckap5l
XM_034311797.1 mRNA downstream 2395 20073860 ~ 20098604 (-) False nckap5l
XM_034311798.1 mRNA downstream 2395 20075427 ~ 20098604 (-) False nckap5l
XM_026920679.2 mRNA downstream 4376 20073860 ~ 20096623 (-) False nckap5l
XM_026920526.2 mRNA upstream 572 20109782 ~ 20119947 (-) False mlh3
XM_026920525.2 mRNA upstream 572 20109782 ~ 20119947 (-) True mlh3
XM_026921334.2 mRNA upstream 29570 20138780 ~ 20142055 (-) True tuba1c
XM_026921331.2 mRNA upstream 46739 20155949 ~ 20179690 (-) False jph2
XM_026921329.2 mRNA upstream 46739 20155949 ~ 20179690 (-) False jph2
TU305224 other downstream 479439 19615527 ~ 19621560 (-) False magi3a
XR_004579690.1 other downstream 713958 19370687 ~ 19387041 (-) False LOC113530570
trnak-uuu_17 other downstream 972463 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579689.1 other downstream 1036417 18937910 ~ 19064582 (-) False lrp1ab
TU304189 other downstream 1587742 18509155 ~ 18513257 (-) False LOC113530839
XR_004579656.1 other upstream 1253 20110463 ~ 20119949 (-) False mlh3
TU305550 other upstream 142960 20252170 ~ 20271907 (-) True G258077
TU305957 other upstream 721618 20830828 ~ 20867958 (-) False LOC117599256
TU306159 other upstream 1059776 21168986 ~ 21169698 (-) True G258580
trnaq-uug_7 other upstream 1245416 21354626 ~ 21354697 (-) False trnaq-uug_7

Expression Profile