RNA id: XM_026921416.2


Basic Information

Item Value
RNA id XM_026921416.2
length 2428
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC113530971
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23572197 ~ 23583979 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagagagagagagagagtgtgtgtgtgagagtttatGTGTGCATGCAGGCATCCTGTTCACGCTGGCTTTCTTGCATGCAGTGATGACGCTCACTCTCACAAAAGCCAAAGTGGAACTAGAAGCCATTTCGTGTGCATGAGGTCTGGCTTAAGCTCCATCTAACAAGCGCTGGGAGAgatattgataaaaaaaagaaaagatgtctCAAAATTATGTTCATCTAATTGCTTTTGCTCTTGtggctgtgTTGTGCGTCTGCACTGTCACAAGTGTTTCAGGCTCTGCTGCAGGGCAAGCAAAAGACAACGTGACCTGTCATGGGAATTGTTCTGAATCTAAATCTGAGATAGTAAACTCAACCTCACAGCTGAACGAGAGCACCACCCCTAGCGCCGACCCACCATCTCCTCACAGcaacagcacacacagacatgatCACAGCAACTTCACAGACACTGAGGGCCcagaagaaaataaacagaacgtCACCACCAGAATCAGCACAGGATCTACCACCACGAGATCTGCCACCACAGGATCTACCACCACGGGATCTACCACCACGGGATCTACCACCACGGGATCTACCACTACGGGATCTACCACCACGGGATCTGCCGCTACGGACTCAGAATCAGGTGGAAATAGTAGAAGTACAGGGATCTTCTTTCTCATCTTGATcttaattatcatcatcatccttgCTGTCATTTTGTACATTCTTTGGAAAAAGGGAAAGAGATACTCCTTTGACCTGATGAATGGCGAGCATGACACTCCACTCACAGGAGTGCCGATAGGAACCTTCGAACAAACCAAAGGATCTACTACGAATCTGGACGACATTCAGGAGGATAATCCTGACAAAACCAATCCTGTAGCCAACGGATGTTCTGGAGAGACGCCGGACCAGACATCATGCTCTGATCAGCAGAATGTTCCAGAAGAGGACAGCTTCACATCTgatttgaatctgaatttgaattcGCCCGGAAAGAAGGTGGAGTTTAATCTGGATCTGGAGCTGATTGGTGTAGAACCTGAACTGGAGAAACAAGCCACAGACGAACCTACAGACAACGACAAtgagaacaacaacaatgacacaAACACCGGGAATGATTCTGCGGACCTCTTTACTGAAATTAACTTGGATGACACACAGTAAAACCCAGATGCACTTTGCAGACCACAAGGGGGCCCACTGCAAACACCTGTTCCTTATTCTCAAAAGATATTGTTTCAATGTTAGAAATTCTgacaaatatgacaaatataatAAGTGATAAGTGGTTTTACATACTCtattacaataattataaatactTACTTACGGGGCCCCGTGGTGGCCTGGGGGCCTAAGCAACTGCTTAAgctgtgttcacactagcaggtGACAAGTCGCTCAtgtcgcttgtagtttgttTCATGGGCGTGGAGTGAGCGCTACTGTTGTCACTTGTGGGCGTTTACCATCCCTCCAGTGATTTTAACTCCTGTGAGAAAGGGTAGTCACCAAAATCGTGCACAATTTACTACACtggaatgtatttaaaatgtattctagTATTTTGAAGTGAAAAAAGAGTGAAATTGATTGTTGATGTATGTCACTTGCCAGGCTTTGTATTAGCTttgttagcagattagcagcaCAAGCTAACtctactagctacatacacttaCCAGAGACAGCACTATATATCTATTAGATATAACTATAGATATAGCctatatatctatttatatatcttATTCTAACCAGTTAATCACAAATTAAGTAAGCGCTCTAATCAGTGAAGAACTGAAAAAATGTCATATCGAACTCACCATATGATTAGTCCAGGCAATCATTGAACccaatcatttggattttgACGCTTTACAGAGTCATATCTAATTTGCATCAAGTTGAGAAACTATCAACTCGCATGCTGCTTTGTCACTGCTGCTGTCGTACATTACTGcatgtacatagaaaatgaaactGCCGCTTTGTCGCTCGTTAGTGTGAATAAAGGGTAATACCGCTTGCACTTATAAACAGCCCTGGCCAAGACCGTAAACTTTTCAAAACCAGTTCAATGTTAAGTATTTTTCAAAAGGACAATAGGATTCCAGTGAGTTTTTACCTCACATACACTGTCTGACCATAGAAActtctatttttgtatttttttatgaacataTGTGGTAGTATAGTTGATTACAGAAGAAGAAGCCTAAAAAAAATGATCTTTGTTATTAATGAAACTGTACGTGTTAGTGATGGCTTAACTACTAATGGTCATATAGATGATTGTTTTTTTGGGTGTCACAGACAATGactgaaatgaacaaaatccTATTTTTATATCAGAATGTTTGATATTCCTTCTGCATTCTCAAAACTGTAAATTTACTACTTAATGAATAAACTATAGCAA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307893 lncRNA upstream 9813 23527428 ~ 23562384 (+) True G260074
TU307905 lncRNA upstream 17120 23554596 ~ 23555077 (+) True G260083
TU307815 lncRNA upstream 97753 23473913 ~ 23474444 (+) True G260011
TU307813 lncRNA upstream 103140 23468826 ~ 23469057 (+) True G260009
TU307756 lncRNA upstream 209907 23344862 ~ 23362290 (+) True G259978
TU308085 lncRNA downstream 242913 23826892 ~ 23827631 (+) True G260222
TU308086 lncRNA downstream 277663 23861642 ~ 23862570 (+) True G260223
TU308080 lncRNA downstream 283672 23867651 ~ 23869556 (+) True G260217
TU308096 lncRNA downstream 333902 23917881 ~ 23918391 (+) True G260232
XR_004579726.1 lncRNA downstream 418570 24002549 ~ 24003381 (+) True LOC117599261
XM_026920110.2 mRNA upstream 3524 23563545 ~ 23568673 (+) True anapc10
XM_026920292.2 mRNA upstream 26124 23530494 ~ 23546073 (+) True otud4
XM_026920293.2 mRNA upstream 27341 23530494 ~ 23544856 (+) False otud4
XM_026920291.2 mRNA upstream 27341 23530495 ~ 23544856 (+) False otud4
XM_026920296.2 mRNA upstream 50382 23510617 ~ 23521815 (+) True slc10a7
XM_026920687.2 mRNA downstream 800 23584779 ~ 23604485 (+) True LOC113530551
XM_034311840.1 mRNA downstream 21125 23605104 ~ 23617167 (+) True rnf150b
XM_026920685.2 mRNA downstream 46614 23630593 ~ 23634770 (+) True si:ch211-149b19.2
XM_026920244.2 mRNA downstream 52268 23636247 ~ 23642564 (+) True si:ch211-149b19.3
XM_034311847.1 mRNA downstream 88067 23672046 ~ 23763537 (+) True LOC113530587
TU307780 other upstream 182883 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 188544 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other upstream 188544 23371747 ~ 23383653 (+) False LOC117599309
XR_004579671.1 other upstream 892647 22671625 ~ 22679550 (+) False LOC113530514
trnal-uaa_2 other upstream 1260309 22311806 ~ 22311888 (+) True trnal-uaa_2
TU308306 other downstream 448248 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 684598 24268577 ~ 24269267 (+) True G260483
XR_004579660.1 other downstream 1040958 24624937 ~ 24634545 (+) False ddx58

Expression Profile