RNA id: XM_026921428.2


Basic Information

Item Value
RNA id XM_026921428.2
length 3311
RNA type mRNA
GC content 0.46
exon number 9
gene id iffo2a
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10065107 ~ 10091153 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTAGCTAACCTCTCAGCTCTCTGGAGACTCGGCGGCTTTTAGCTCACTGCTGACTTCCGGCTTTGTGACTCCACTGATTTttgaattctttaaaatttatttgagACACGCAAATCTACTTAGCTGCTCCCCCCCACAGGCTGTGtgtgaagaatgtgtgtgtatgagtgtgtgtatgtgtgtgtgagggtgtgtagcctcctcctcctgccatttCCCGTTTGGAGGAGCTTATCTTAGCCGCTCGGAATGGGAGTCTCAGTAGCGAGAGGTTTTCCAGGAGCACATAACTGGCGTTACTCTTCACCGAGCAAACGGAGAAAGTGATGTAACAGCTCTGTTAGCCGTTCAACGCTCTTAGGTGGCTTGTATTTCACCAGGGGAAAGAGTAGGCtatgtctttttatttgtatgaCATTAGATAAAGGGAATAAAGGGAAGGGATAGGGATAGGGAGTGCACCTTGCGCTTCTGAACACAGCTATGAGATGACGCGAGTGGCTTTGTTTGAATGAACCACTTCCAGTCCAGGATGGATGACTTCCCTCATCTTTTTCCAGACCAAAACCCTCCAGTTCACATGGAAACGCCGTTACCTCGTATTATCGGTGCCTCTGTGGCGACAGGAGCCGGCTCAGGGGTGAGCAGCGCCTTACGGAATGATTTAGGCTCCaatattcatgttttaaaaacgCTGAATCTCCGCTTCCGCTGCTTCCTCGCCAAAGTGCATGAGCTGGAGCGCAGGAACAAAGTGCTAGAGACTCAGCTGCAGCAGGCTCTGGAGGAGTCCCGCTACAGAAGCTTCTTAAGCCGGGAGCAAGCTATCCAAACCGACTACGAGCTCCCGTTTGCAGGCCCGCTAGCCGAGGCGAGGGTCCCCGGCAGAATCTGGAGCTACTCCCACAGCAGGAGGTATGGAGGCCGGCTGGAGCTGCATCACGGGCCCGGGGTTTCATGGACGCACCCAGATGGAGTCGGAGTCCAGATCGACACCATCACCCCTGAGCTGAGGGCCATCTACAACGTGTTAGCCAAAGTGAAGCGAGAGAGGGACGAATACAGAAGGAGATGGGAGGAGGAGTCGTCCAAGTGCCAGCAAATGGAGGCCATGGTGGAGACTTTACAACAAAGTGCGCAGGAGTCTGAGGACCTACGGAGAGAACTGAGTGAGAAAGTGGAACAGCTTAAAGCTGATTTGATCGTCTATAAGAGTCTCATGACCGatCAAATGTCAGATTTGGACTCCAAAATTCAAGAGAAAGCCATGAAGGTGGACATGGACATTTGTAGACGCATCGATATCACAGCTAAGCTGTGCGACGTGGCCCAGCAGAGGAACTCAGAAGACATGAGCAAGATGTTTCATGTCAGTCCTTCTAGAGCTCCTGCAGACCACAAAGGGgtgTCTGCAGCATGTAAAAAGAAGGAGCGTAAGGCTGTGTCTGATGAGGAGAATGCTGAGGTGGAGGCAGACAGCGAGCACTCTGAGAAGGAGGTTTCTGGATCTCTGAACATTACAGATGAAATGAAGCGCATGCTCAGTCAGCTAATTAGCTCAGATAACTGCTCTGTCGCCAGGAGGGAGACGTTCGAGTTTGATGATGACTGTGACAGTCTGGCCTGGGAGGAGACCGAAGAGACTCTGCTCCTGTGGGAGGACTTTACCAACAGCCCTGTTATTTCCACCTCCACcactcctgctcctgctgctgccgGTTCACACTCTAGCGCTGCCTGTGCTGCCGAATGCCACGGAGAAACACACGAGCAGGATGGAAGTCTGCGCAGTCTGATAAACGAGACCGAGTCACTCTTTAAAACTAGAGAGCAGGAGTACCATGCAACAATCGGACAGATCGAGCTGGAGTTGGCCACAGCCAAGAGTGACATGACCAGACACCTGCACGAGTACATGGAGATGTGCAGTATGAAGCGAGGACTGGATGTGCAGATGGAGACCTGTCGCAGACTCATCCAGAGCTCAGCAACCACTGGCAGAAACTCACCATTCTTTAACTCTGGAGCAAGCAGTGACTCAGGAAATGCAGAAGACCTACAAGATGAGCTAGACAGGGAtggagagaaggacagagacatCGTTGGAAAGAGCgatggagagacagatgtaTATGGGGAGGTCAGTTGATGACCCTCCACATCACATCCCTCTTCTTCCACAGTGGCACAGGGGGTAGAAACTCTGACCCAGTCTTCCGTGATATGCGGCTCTGTGGATCTCAGAGTCGGTAGTACGTGTGCTGTCCCAAATTGGGATGAAATCAGTTTTACAGAGTCTGTCTCCTGAAACTGTCTTTTTAATCAGCACTGCCAAGGCATGGCTCCATCTTCTCCTGTCCTCTATCACACTGGCttgtaaaatctacagtatacaCAATGTCTTTCaacattctttcctttttttatagTCTGCTTCAGAGGTAATCATGAAATCCAATTATCAGTTTTTATTCATCGTATTACAGCAAAATAGATTTGTTGGTCATTTGTTAGTCATAAAGGAGCCTAGAATCAACATTAACAATAGCATTTGTTCTGACTCTTGTCACCTGATCAATGGAAATActgtgttttatacattttagagGAATCATTgctctgaaatctgaaatattgCAGATAATCACATAGACACACCATATAAGCCATGCAGTAGGAGCTTCTACACTAAGGTTAGACAACATTGCACAGTTGTGCACAGAGCACTATGCAATAAGCTGCTTTGGAAATGCagtttaactgttttttttttttttttttacagggacATTCTTGATATTTGTGAAAAAGTGCCCTGCTCTTATTTTACCTTTAATGCAGAAGTTTCAGTGTTCAGAGAAAGCTGATGCCAAACAGTAGAAATCCAAAACCCTTGTGCCTGCAGCGATGTTTTATACAGTACCAGTTGccttattagatttttttttttttagctgtgcttttaaaattatttcaaaactGATCAAAGTCAATAGCAGATAGAAGAAAACATTgtgaaatgtacaaaaacatcAAACAACAATACACCTGTTGGTCATCCGTGAAgtaaaaatgtgattattagtattattaatattactattgtCATTACTGTTGTTGGTTTTTGGAATTTTTCTGCGTGGATATTTTCTGTATCTTTATAAAGGTCTTGTTTAGAGTTTGCTATAATTATCATGCTGAATTATGTGGAGACTTAATCactgatctttttttaatttatggaaAAGAGTTATTCCTTATGTTTTATCCTCTGCTTAACGGACacttaataaatcattatttatacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298869 lncRNA downstream 9024 10054877 ~ 10056083 (-) True G252479
TU298662 lncRNA downstream 144959 9917429 ~ 9920148 (-) True G252331
TU298642 lncRNA downstream 169582 9895284 ~ 9895525 (-) True G252311
TU298584 lncRNA downstream 215411 9847116 ~ 9849696 (-) True G252265
TU298530 lncRNA downstream 293544 9768247 ~ 9771563 (-) True LOC117599234
XR_004579652.1 lncRNA upstream 88635 10179788 ~ 10181888 (-) True LOC117599207
XR_004579740.1 lncRNA upstream 152888 10244041 ~ 10288684 (-) False LOC117599279
XR_004579738.1 lncRNA upstream 152888 10244041 ~ 10288238 (-) True LOC117599279
XR_004579737.1 lncRNA upstream 152888 10244041 ~ 10287807 (-) False LOC117599279
XR_004579739.1 lncRNA upstream 152888 10244041 ~ 10287072 (-) False LOC117599279
XM_026920735.2 mRNA downstream 2362 10057524 ~ 10062745 (-) True LOC113530596
XM_026921035.2 mRNA downstream 14491 10049304 ~ 10050616 (-) True LOC113530745
XM_026921216.2 mRNA downstream 17742 10046185 ~ 10047365 (-) True LOC113530854
XM_026921191.2 mRNA downstream 24938 10038719 ~ 10040169 (-) True LOC113530835
XM_034312011.1 mRNA downstream 29288 10034273 ~ 10035819 (-) True LOC117599272
XM_034311776.1 mRNA upstream 1579 10092732 ~ 10139291 (-) True ubr4
XM_034311841.1 mRNA upstream 49581 10140734 ~ 10152722 (-) True emc1
XM_026921175.2 mRNA upstream 251645 10342798 ~ 10372696 (-) False megf6a
XM_026921174.2 mRNA upstream 251645 10342798 ~ 10372696 (-) True megf6a
XM_034311644.1 mRNA upstream 312024 10403177 ~ 10411529 (-) False ttc34
TU298725 other downstream 35114 10029492 ~ 10029993 (-) True G252373
XR_003403155.2 other downstream 1486507 8566656 ~ 8578600 (-) False ttll10
TU296847 other downstream 2555360 7476274 ~ 7509747 (-) False ctnnbip1
TU296070 other downstream 3757344 6304844 ~ 6307763 (-) False rps26
XR_003404646.1 other downstream 4916975 5148053 ~ 5148132 (-) True LOC113545697
XR_003403171.2 other upstream 369541 10460694 ~ 10469534 (-) False usp21
TU299234 other upstream 545370 10636523 ~ 10638718 (-) False sinup
TU299470 other upstream 922811 11013964 ~ 11015630 (-) False LOC113530950
trnae-uuc_4 other upstream 1167890 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 1182177 11273330 ~ 11273403 (-) True trnan-guu_24

Expression Profile