RNA id: XM_034312246.1


Basic Information

Item Value
RNA id XM_034312246.1
length 2049
RNA type mRNA
GC content 0.50
exon number 7
gene id sgms2b
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24715017 ~ 24725235 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttaattgaGTATTTCTGAGGCATCTGAGGCAAGCACTTGAGATCTCCCTGAGCCACTTCTTTAAGACGCGAGTGGGCGTGGTGTTTAACCGGAAGTAGGCGTGTTTTTGAGCCCCAGGTGGGCGTTAGCGACAGGTGAAGGCTTCAGATTCAGATTCGGTCTGTGTGGAGTGGACATGAAAACACTGATCAGCCGCGGAGCAGTAATACACACAGTGCTGTGAGTTTCACTCACCAGATCCAGATCCAGGTTCAGGTGGAGATCCAGATCCAGGTGGAGATCCAGGTTCAGGTGGAGATCCAGATCCAGGTGGAGATCCAGGTTCAGGTGGAGATCCAGATCCAGGTTCAGgtcACCGTTCACACAGGAAGCAGCAGAAGTTCAGCAGCCGGTGGTTTGTTTCCACTCCTCCGAACAGAttattatccatccattcacaaAACGCAGGGTgatttgggtgtgtgtgtgtaagagagacagtgtgtgtgtgggtgagcgATTACATTAACAATGGCGGTGACCAAGCTTCCTGAATCAGCGCAGCATGAAGGTGAAAATGAGGGCCACATTGAAGTATTAGTTCCAGACACTTCCCCACACCCCCAGactccacccacagaactaaCCCCCAGCATTACAAAAGAGGGCGGAGCTGCAGACCACGCCACGGACCATGCCACGCCCCAGTCTCGTCTGTCACGAGGTTTTGCGCGTTTGTTGCGTAAGAACCAGGACTACATCCGCATCAGCATGGGCGAGCCCCGCCCTGAGCGCCTGCACGCTGAGCGTCTGCCGGCTGAGTGGTGGAAAACGGGCGTGTCCTTCCTGTGGGCGGGGTCTATGCtcttcctcaccactgtcatgATCACGGTGGTGCACGAGCGCGTCCCTGAGAAGGAGAGCAATCCACCGCTGCCCGATAAGTTCTTTGACTATGTGCCGCGTGTGGAGTGGGCGTTTACGGTCACCGAGGTCATCGGTATCGTACTGACGCTCGTCTGGACCACACAGtggctctgtctcaaacacaagtcaaTCATAGGCCGCAGATTCTTCTTCCTGATGGGGATGTTGTATCTATATCGCATCATCACCATGTACATCACCACGCTGCCTGTCCCCAGCACACACATGAACTGTGCTCCCaagtTGTATGATGACTCAGTGGGGAAAGTGTATCGCATCCTGCAGCTCGTCTCAGGAGGAGGTTTGTCCATCACGGGCTCACACATGATGTGTGGTGATTTCCTGTACAGCGGTCACACAGTCATCCTCACACTCACCTACCTCTTCAtcagtgaatACTCCCCCCGCTGGATGTGGTGGTACCACCTGATCTGCTGGTTGCTGAGTTTAGTGGGCGTGGTCTTCATCCTTGTAGCTCATGAGCACTACAGCGTGGACGTGGTGGTGGCGTATTTCGTTACGTCACGCCTCTTCTACTGGTACCACACCATGGCCAACAACCAGTCTCTACGAGATTCTCCTCAGAATTATCTCTCTCGTGTGTGGTGGAGGTTCTTCTTTAACTTCCTGGAGAGGAACGTTCGCTCCGTGGTGCCCTGTAAGTTCTGCTGGCCGTTCACTCTGCCCACCTCCTGCCTTACTACGCCCTGCGACTCGTACTCCAAAGTGCAGACGACCCGAGacgagtgacacacacacacacacacacacacacacacacacacacacacacacacacaggggacaGAACGTTACAGctcaagcgcacacacacagcagtattTTACagactgagagtgtgtgtgtgtgtacctaagTGCTTTAAAGACTCTATatggtgaagaagaagaaaataatttatttttatgaaggatgtttatgttttatgaaTTTGTGACTCAGTCGTTATGAGTTTACTGACATTACTGAAGgactgtttatgtttattgacacgtactgtattttttttaaatttcagtgtgaATATCTTTTGCAATAGTACTGTATGTTCGTTAAAGTTTAATATTGCTTATTTGGCCTGCTGTATGATAATGTAAAAGAATAAACTATTTTTCTATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403185.2 lncRNA upstream 8914 24705287 ~ 24706115 (+) True LOC113530849
TU308681 lncRNA upstream 97812 24616168 ~ 24617217 (+) True G260677
TU308703 lncRNA downstream 612 24725847 ~ 24728397 (+) True G260691
TU308704 lncRNA downstream 612 24725847 ~ 24728397 (+) False G260691
XR_004579759.1 lncRNA downstream 10488 24735723 ~ 24736373 (+) True LOC117599308
TU308715 lncRNA downstream 20546 24745781 ~ 24751808 (+) False G260697
TU308717 lncRNA downstream 20546 24745781 ~ 24751808 (+) True G260697
XM_026920325.2 mRNA upstream 16596 24693031 ~ 24698433 (+) False aimp1b
XM_034312221.1 mRNA downstream 71994 24797229 ~ 24801608 (+) True LOC117599303
XM_034312222.1 mRNA downstream 76657 24801892 ~ 24802529 (+) True LOC117599304
XM_034312223.1 mRNA downstream 77936 24803171 ~ 24804413 (+) True LOC117599305
XM_034311726.1 mRNA downstream 82282 24807517 ~ 24826683 (+) False zgc:158659
XM_034311724.1 mRNA downstream 84606 24809841 ~ 24826683 (+) False zgc:158659
XR_004579660.1 other upstream 80484 24624937 ~ 24634545 (+) False ddx58
TU308384 other upstream 445762 24268577 ~ 24269267 (+) True G260483
TU308306 other upstream 682305 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 1325715 23387538 ~ 23389314 (+) True G259993
TU307771 other upstream 1331376 23371747 ~ 23383653 (+) False LOC117599309

Expression Profile