RNA id: XM_026921444.2


Basic Information

Item Value
RNA id XM_026921444.2
length 3057
RNA type mRNA
GC content 0.47
exon number 10
gene id gmeb2
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22745066 ~ 22755933 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACACAGTACACGTCAGGGGTCATTGTAttactgcgcatgcgcggtgTCCTCCTCCGGCTAACTCACTTCGTAAACACAAAACTGACGAAGCTCGTTCCTGAGAACGTAAGAGGAGCCGCCTTTAAAAGGAAGACCGTGTTGGTCTTCTCCATCATGGCGTCCACCTCTGAGGAGAATGTCCATGTagaggaggtggtggtggtgacaACGCCGGACAGCTCAGCTCAGAGTCCCACCGTGGAGGACATGAAGAACATGCTGGAGACCGCAGACCTGCAGCAGCCTGAGGTGGATAATATGGAGCAGAGTTTAGAGTCTGAATCCAGTCCTGCCCTCTCTCTGCCTAAAGAAGCAGTGCTTGATAAGTTTTCAGCAAATATGGATATGGAGACGGACATCCTTTACCAAATAACCTGCGGAGACAGCAAGGCTGACCTGGTGTGGAAAAAATTCGTCTGCCCCGGCATCAACGTCAAATGCGTGCAGTTCAACAATCACCTGATTAGTCCAAAGGAGTTTGTCTACCTGGCTGGAAAATCCACTCTGAAAGACTGGAAGAGAGCGATACGGCTCAACGGGACCATGTTAAGGAAGATCATGGACTCTGGTGAGCTGGACTTCTACCAGCACTCGAAGTTGTGCTCCAACACGTGCCGCAGCACCAAGATCGACCTGGTGGGGACGCGAGCGTCTCTCAGCAGCCAGGCGTCCACCGAGACTGCACCGACTCCGTCTTCTACTGACGTAAATGGATCTACAGCCACGTTTACAACGGAAACCTCAGATGACAGCACTGAGTGGGTCACGGCTATAGGAGAGGACACCATGACATTCTGGAAAGGTCTGAAGGACGCCGGACTGCTGGAGGACATCGTGGAGGACCTGCAGAAAGAGATCGAGGAGATCCTCAAAGGCCTGGAGGAACGCATCCAAGAACCTCCGCtacaggtcaaagATGCAGTTCTGCTCAACAATATTGTTCAGAACTTTGGGATGCTGGACCTGGTGAAGAAAGTGCTGGCCAGCCATAAGAGCGAAATGGATCGCTGCAGGGAACAGTACACTCAGAGCTTAGCAGCCCTGGAGCGCCAGTGTGACGAGCACCGCAAGCGCGCCAAGGAACTGAAGAGCAAATCCCAGCACCTCAACAACGTCCTCATGAACCTGACCCCTGTAGCCACGCCCCCAGCTCCCAAACGTCCCCGCCTCACCCGTGCCGTGTCCGGACCCGCCTCGGTGATGGCGCCACCTGCTCAGCCCACCCAGTTCACTCTGCCCATCACCCAGCTTACAGGCATCCCATTGGACAAAATCCTGTCAGCCGTGGGAGGCTCCGCCCCTAATCAGGCACCTTTTATAGGGAGCTACACTGTCCTGACATCTCCAGGAGGAGCAGAACTGCAGCCCGATTCGTCCAATCTCACCGTGCTGAGCTCGGATGTAGCAGGAGGCTCCGCCATCGTTAAAGTGCTCAGTCCATTTCAGCTGGTCACGCTGCCCACTCTGGGAACTGGAACCACGCTGCAGAACCTGGCAgcaccagcagggggcagcacCGTCGTGGCAGTGCCTGTTAGTACCACTACAGTGGAGACGCTGGGAGCTCAGGCAGATGAGACAGCAGAGGGGAACGCTGAACAGCAAAGCAAAGACAAGCAGTAGAGTCAATAAGACCTGGATGGAAATTTCCATTgatttttcaaagaaaaaaatataagaagTTTTTTAGTCTAAttagaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgctttTTTTTGATACGTTTCATGTCATGCACTGAAATCTTGCATTCCTTCAATCTCATGTTGGATTgctaaaactatttttatttttgttccgtgctttagttatttatttttctagtcACATAACAGCAACCAGTCCAGGACGGCGAGGGTTAAAATGGCGAGGATAAAAACGCCACATCTTTTCACTCTAATAGTCATTCAGTGTCATAAAAACTGAAAGCATTAACAAGTGCAGAACTCCCTTTAAGAAAATCTTACACTGAGTTCACACAGAAACGTGAAAGATGAGCGTTCGCTTTCTACGTTTGTGCAAAACACAGAGTTATGATTTCAGCATCAGTGACATTCGAATTGAGATTTTCTCGATTCTTTGCAAAGTAGGTGCGACTtagtaaagcgacaaatccaaacaattggTTTGAATAAATCCTCACACCAAACCTATGGTGCATGTGATccgatgtttcttcagttccccactcacagctttagttcctacctgcaattagttcctgcaacaaatggaagaaaaacttacaaCCATGGTTtaatcttatcctgtcatatacgacctctcattaaatgtatatatgaaGAAAAGTCATGCTTGAAGTAGTGGAGATAATTGCCTCTTGtgcagttagcttgctttgctaatctgagAATGAAGCTAGTGCAAAGTCTAggatgtaacatgtaaatcaaccAATTTTCACGATGATTAGAGCACTATTGAATTTGTGGTTCTGAATCTGGTTAGctttacaatttatatataGCTTTACCTTTATCTCCGTTTATCTTTggaggtacaaaaaaaaacaagcaacaaaCTACAAGCAACATGAGCCACTTGTCGCATGTTATTGTGAACGTACGGTTACTCAGTTCTTCGCTCCACCTCACTTGTGCAGTCGTTGTCATGAAACAAGTTCTTGGACCCCATCGAGCTCTGAACCCTCTGGGAAAAGCCGTTTCACCAGCGGTCCTGCATGAACACGCTCGGAGGAGAGCACTAATGACTTAAAAACTAGCTACCAGGCACAAAGTCCatacttatttaattaatgctCTGTTGAAGGTACATTTCTGAATTTTACGTTGTTGGTTTATTtgagcagaagaaaaaaaaacctggggTTGATTTGGAGTGTTTATGGTATTCATGTGTAAATATGTTGCTGTACTGTTACTGTGAATGCTTTGTAGATTTTGTGTTACTGATCAGTGTTATTTCCTAGCTTTCCCCTGATAAAAGGAGTTCAAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307080 lncRNA upstream 159263 22584557 ~ 22585809 (+) True G259403
TU306925 lncRNA upstream 242167 22502687 ~ 22502905 (+) True G259268
TU306924 lncRNA upstream 263972 22480557 ~ 22481100 (+) True G259267
XR_004579757.1 lncRNA upstream 514392 22227964 ~ 22230680 (+) True LOC117599300
TU306766 lncRNA upstream 594273 22148905 ~ 22150799 (+) True G259131
TU307196 lncRNA downstream 83284 22839217 ~ 22841739 (+) True G259498
TU307249 lncRNA downstream 257451 23013384 ~ 23015896 (+) True G259536
TU307252 lncRNA downstream 266037 23021970 ~ 23022448 (+) True G259539
TU307254 lncRNA downstream 270513 23026446 ~ 23064569 (+) True G259540
TU307418 lncRNA downstream 521501 23277434 ~ 23277909 (+) True G259690
XM_026920957.2 mRNA upstream 1047 22742054 ~ 22744025 (+) True LOC113530713
XM_026921103.2 mRNA upstream 10049 22721758 ~ 22735023 (+) True LOC113530788
XM_026920613.2 mRNA upstream 28926 22709993 ~ 22716146 (+) True LOC113530513
XM_034311614.1 mRNA upstream 46168 22693240 ~ 22698904 (+) True LOC117595661
XM_034311612.1 mRNA upstream 64530 22671627 ~ 22680542 (+) True LOC113530514
XM_026921253.2 mRNA downstream 19798 22775731 ~ 22783461 (+) True stk35
XM_026921401.2 mRNA downstream 78589 22834522 ~ 22851428 (+) False LOC113530963
XM_026921402.2 mRNA downstream 78589 22834522 ~ 22851428 (+) False LOC113530963
XM_026921400.2 mRNA downstream 78589 22834522 ~ 22851428 (+) False LOC113530963
XM_034312177.1 mRNA downstream 79815 22835748 ~ 22851428 (+) False LOC113530963
XR_004579671.1 other upstream 65522 22671625 ~ 22679550 (+) False LOC113530514
trnal-uaa_2 other upstream 433184 22311806 ~ 22311888 (+) True trnal-uaa_2
TU306357 other upstream 1202818 21538254 ~ 21542254 (+) False LOC117599233
TU306101 other upstream 1514201 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU305940 other upstream 1839999 20903147 ~ 20905073 (+) False ubxn10
TU307769 other downstream 615814 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other downstream 615814 23371747 ~ 23383653 (+) False LOC117599309
TU307780 other downstream 631605 23387538 ~ 23389314 (+) True G259993
TU308306 other downstream 1276294 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 1512644 24268577 ~ 24269267 (+) True G260483

Expression Profile