RNA id: XM_034311572.1


Basic Information

Item Value
RNA id XM_034311572.1
length 2184
RNA type mRNA
GC content 0.51
exon number 15
gene id prdm5
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22098753 ~ 22148588 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTTTCAGGATTAGTAAGGCAGAGTAATGACAATGCTGGGCATGTACGTGCCAGACAGGTTCGCTCTCAAGTCCTCCAGAGTCCAAGACGGAGTCGGGCTGTACACTGCGAGACGAGTCAAGAAGGGAGAGAAGTTCGGCCCGTTCGCAGGCGAGAAGAGGATGCCTGGTGATCTGGACGAGAGCATGGACCCGAGGCTGATGTGGGAGGTTCGAGGGAACAGAGGTGACGTGCTCTACATACTGGATGCCAGCAACCCTCGACACGCTAACTGGCTGCGCTTCGTGCACCAGGCACCGTCTCAGGAGCAGAAGAACCTGGCTGCCATCCAGGATGGGGAGAATATCTTTTACCTTGCCATCGATGACATAGAGACCGATACGGAGCTCCTCATTGGCTACCTGGACAGTGacatggaggaggaagaggaggacgaGATTGTcaaagatgaagaagaggacAGCAAAGAAGCCAAAAGTGTCAGCACTCAACCAGagtcaGCGATAAAGCAGGAAGATCACCCGTGTCTGCTGTGTGAGAGCAGTTTCCCCAGTGAGGAGGTTCTGGCTGAACACCTGCAGAGTTTACACCAGAGAGCCAGTGCCGAGGACAAAGAGTTCAAGTGCCGCAACTGTGGCAAAGAGTTCCCCGTTAAACAGGCACTGCAGCGCCAcgTTCTCCACTGCACTGAGAGTTCTGCTTCAGCTGGAGATGCTTCCCGAGTTCACCAGTGTGCTCTCTGTCACTGCTCCTTCAGCTCTGAGTCCagcttTGAACAGCACAAGGAAGCCTGTAAAGGAGAAGCCAGGTTTATCTGTAAGGCCGAGAGCTGCGGGAAGAGATTCAAGAGCAAAGACGCGCTAAAGAAGCACAAAAGCAACGTTCACACAGGCAGCACTCGGAGGAAGCTCATATGCACCATCTGCAATAGAAAATGCTCGTCTTCAGTCAACCTGCAGGAGCACCGCAAGATCCATGAGATATTCGACTGTCCTGCGTGTGACAAGAAGTTCATCTCAACCAATCAGCTGAAGCGCCATATGATCACACATTCAGAGAAGCGACCCTACACCTGTGAGATTTGCAACCGCAGCTTCAAGCGCTTGGACCAGGTGACAGCTCATAAAATCATCCACAGCGAGGACAAACCGTACAAGTGCAAGCTGTGCTGGAAAGAATTCGCTCACCGCAATGTCTACAAGAACCacaagaagACACACTCAGAGGAGAGGCCATTTCAGTGTGAGGAGTGTAAGGCTCTGTTCCGGACACCGTTCTCCCTCCAGCGGCATCTCCTCATCCACAACAGTGAGAGGACGTTCAAGTGCGACCAGTGCGACGCCACGTTTAAGCGCAAGGACACGCTGAACGTACACATACAGGTGGTACATGATGGACATAAGAAGTACAAGTGTGACCTGTGTGAGAAAGCCTTCGTCACTCCCTCCGTCCTCAAGAGCCACAAGAAGACTCACAccggagagaaggagaagatcTGTCCGTACTGCGGTCAGAAGTTCGCCAGCAACGGGACCCTGAGAGTGCACATTCGCAGCCATAcaggtgaacGCCCTTACCAGTGCCCGTACTGTGACAAGGCCTTCAGCAAGAATGATGGGCTGAAGATGCACATACGTACACACACTCGGttCCTGCTCAACTCTGGTTCTAATCTTAACACCggaaagattttcttttttggctGCCTGCTGAAAATCTGAACACACTGGacgtatgtacacacacacacacacacacacacgtctataCATGCAGCTTTGCTTCCTGATCAAAGGTCAGCAGAAGGAAAGGCGGACAGCTGCTgcagatgtgatgtgatggttcGCCACAACATATTACAGCTCCTGTGTCTGAGTCGTAACCTTTGACTTCTCACATGTTCGAGCCCAGCTGATCTGATACTTTTTAATCTGACACACAACAAGggagcttttttaaaaaaatttgcatgATGTACAACACATATGTCTcgctttcattctttctttcaattttttgtttctgttttttaaccCCATACACGcatactgatacacacacttgATCTTGCATATCCTGTGTGTATTATATGTCGCCACTCCTTGCCCTGCCTATAAGATATCTCCTTTTCCCAGGATTCACGCTTCCTGTGTCCACCCATTCCCGTGACAGTCTGGGTTAGg

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:2000050 regulation of non-canonical Wnt signaling pathway biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0060828 regulation of canonical Wnt signaling pathway biological_process
GO:0046872 metal ion binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306707 lncRNA upstream 10135 22088182 ~ 22088751 (+) True G259078
TU306730 lncRNA upstream 50517 22047140 ~ 22048369 (+) True G259097
TU306732 lncRNA upstream 55828 22042779 ~ 22043058 (+) True G259099
TU306727 lncRNA upstream 72244 22025808 ~ 22026642 (+) True G259094
TU306726 lncRNA upstream 76414 22016417 ~ 22022472 (+) False G259093
TU306766 lncRNA downstream 6566 22148905 ~ 22150799 (+) True G259131
XR_004579757.1 lncRNA downstream 85625 22227964 ~ 22230680 (+) True LOC117599300
TU306924 lncRNA downstream 338218 22480557 ~ 22481100 (+) True G259267
TU306925 lncRNA downstream 360348 22502687 ~ 22502905 (+) True G259268
TU307080 lncRNA downstream 442218 22584557 ~ 22585809 (+) True G259403
XM_026921231.2 mRNA upstream 11677 22070435 ~ 22087209 (+) True ndnf
XM_026921232.2 mRNA upstream 11677 22070982 ~ 22087209 (+) False ndnf
XM_034312134.1 mRNA upstream 131991 21963278 ~ 21966895 (+) True LOC113530690
XM_026920922.2 mRNA upstream 135974 21960427 ~ 21962912 (+) True LOC113530693
XM_026920920.2 mRNA upstream 140190 21956247 ~ 21958696 (+) True LOC113530692
XM_026920248.2 mRNA downstream 103156 22245495 ~ 22252789 (+) True LOC113530350
XM_026921431.2 mRNA downstream 127362 22269701 ~ 22276968 (+) True slc34a2b
XM_026920699.2 mRNA downstream 165014 22307353 ~ 22308782 (+) True psmb11b
XM_034311736.1 mRNA downstream 172833 22315172 ~ 22501652 (+) True utrn
XM_026921226.2 mRNA downstream 501188 22643527 ~ 22656044 (+) True stxbp3
TU306357 other upstream 556632 21538254 ~ 21542254 (+) False LOC117599233
TU306101 other upstream 868015 21228320 ~ 21230871 (+) False si:ch73-290k24.5
XR_004579743.1 other upstream 1191636 20903105 ~ 20907250 (+) False ubxn10
TU305940 other upstream 1193813 20903147 ~ 20905073 (+) False ubxn10
XR_003403172.2 other upstream 1584691 20510244 ~ 20514195 (+) False LOC113530729
trnal-uaa_2 other downstream 169467 22311806 ~ 22311888 (+) True trnal-uaa_2
XR_004579671.1 other downstream 529286 22671625 ~ 22679550 (+) False LOC113530514
TU307769 other downstream 1229408 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other downstream 1229408 23371747 ~ 23383653 (+) False LOC117599309
TU307780 other downstream 1245199 23387538 ~ 23389314 (+) True G259993

Expression Profile