RNA id: XM_034311581.1


Basic Information

Item Value
RNA id XM_034311581.1
length 1273
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC113530555
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23440496 ~ 23443625 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAACCCGGCTTCCTCTCAGAGCTTACCTACATCTGCTTCATCTCCACACCTCAACTTCTACAAAAACACCAACAATGACGTCTCAAGTCACACTGCTGCTCATCTGCATGCTTTTCTCCAGAGcactGTCACTGACTTGTCTCCAGTGTCTGCCATCAGTGTCTGGAACATGTAACAACATACAGACAACCTGTCCAGATCAGTGTCTCACTCTGACCACTTCTGTGTACtcgaGTGGTACAAATTTGTCATATGGTAAAATGAAGACTTGCGGCATGACAGAGATGTGTGTTAGCATGAGCATGAACCTGGGAATGATGAAAATGACCTACAATGCCAAATGCTGCAGCACTGATCTCTGCAACTCTGAAACTCTGCCAGCTCTTCCACAGCAGGCTCCCAATGGGAGAATGTGTTACACCTATGCTGCTAACGGCTACTCAGGCAAAATGAGCTGTGAAGGAAATGAAGATCGCTGCATGACTGCATCAGttcgcCTAGGAAGTAATACCCTGtctgtgttgaaaggatgtgtGTCCAAGAACTTCTGCGTTGCATCTGGATCATCAGGCATGCCAGAAATCGGTCTATCAAATGTGGAGTGTTGTGAGGGGAACCTGTGTAACACAGGGAATTCCTCAGGTGACAGTTCTGCGAGTAACACAGGGAGTTCCTCAGGTGACAGTTCTGCGAGTAACACAGGGAGTTCCTCAGGTGACAGTTCTGCGAGTAACACAGGGAGTTCCTCAGGTGACAATTCTGCGAGTAAAacactgagtttcctcctcATGATCGTCCCTCTGCTCTCTTCCATCCTCTTCTACTGAGCTCTCGGCTTATGAAGTAGCTCACTTTAAGCTTTATCTGGTACAGTATGAAAAAGGGAAATAGAAAGGTAATAGAAATATAAGTTTATTTTTGGTTGTTAAGGGTTTTTTAGATTGTCTTAGTTCTAACTGATTTATAGATAATAATTTTGTTTGCAAATcaattatgataaaaaaaagactttaatcTTTGACTAGACTAACAAGTCTAGACTAGACTAACAAGTAAGAAATTGAATATTAAGTCTAAGTTAGGTCTATGgatgttattcatttttattaattttttcatattataatattaactaatattcagattattattattattattattattattattattattattattattaccaaaaGCTTTATTGTGAGGTAACCAAACTGCTTTGTGCTGtgcatgtttattaaatatatgtaataaatgaatatatgtcTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307756 lncRNA upstream 78206 23344862 ~ 23362290 (+) True G259978
TU307745 lncRNA upstream 91559 23332680 ~ 23348937 (+) True G259968
TU307742 lncRNA upstream 105161 23332680 ~ 23335335 (+) False G259968
TU307732 lncRNA upstream 131904 23307755 ~ 23308592 (+) True G259962
TU307418 lncRNA upstream 162587 23277434 ~ 23277909 (+) True G259690
TU307813 lncRNA downstream 25201 23468826 ~ 23469057 (+) True G260009
TU307815 lncRNA downstream 30288 23473913 ~ 23474444 (+) True G260011
TU307893 lncRNA downstream 83803 23527428 ~ 23562384 (+) True G260074
TU307905 lncRNA downstream 110971 23554596 ~ 23555077 (+) True G260083
TU308085 lncRNA downstream 383267 23826892 ~ 23827631 (+) True G260222
XM_026921317.2 mRNA upstream 6840 23422194 ~ 23433656 (+) True LOC113530918
XM_026921236.2 mRNA upstream 19268 23414817 ~ 23421228 (+) True LOC113530872
XM_034311598.1 mRNA upstream 29097 23407809 ~ 23411399 (+) True LOC113530556
XM_034312230.1 mRNA upstream 64753 23371744 ~ 23375743 (+) False LOC117599309
XM_026920165.2 mRNA upstream 109230 23319361 ~ 23331266 (+) True znf341
XM_026921319.2 mRNA downstream 4004 23447629 ~ 23450712 (+) True LOC113530919
XM_026920351.2 mRNA downstream 16970 23460595 ~ 23463606 (+) True LOC113530412
XM_026920691.2 mRNA downstream 33569 23477194 ~ 23480770 (+) True LOC113530554
XM_026920690.2 mRNA downstream 40100 23483725 ~ 23486524 (+) True LOC113530553
XM_026921419.2 mRNA downstream 44885 23488510 ~ 23494390 (+) True LOC113530973
TU307780 other upstream 51182 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 56843 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other upstream 56843 23371747 ~ 23383653 (+) False LOC117599309
XR_004579671.1 other upstream 760946 22671625 ~ 22679550 (+) False LOC113530514
trnal-uaa_2 other upstream 1128608 22311806 ~ 22311888 (+) True trnal-uaa_2
TU308306 other downstream 588602 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 824952 24268577 ~ 24269267 (+) True G260483
XR_004579660.1 other downstream 1181312 24624937 ~ 24634545 (+) False ddx58

Expression Profile