RNA id: XM_034311582.1


Basic Information

Item Value
RNA id XM_034311582.1
length 5166
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC113530540
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24321672 ~ 24340163 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagagagagagagagagatacagagagagagcaagagagagtgagagagaaagcgagagggagggatagagacacagagactCCAGAAGAGAAGCACATGTTGTGAATAACCACTGAAGGCAGAGATGAAGGGATGGAgccaagaaataaaaagaaaaacgattcaggagaggagatgaggcaaagagagagagcaagagagaggagagacggagaagaagaaagaaagcatcAGTCCTTTTTCACTCTCATCCcgcagcagacgctccactgaaTCATGCTGATAAGCCGATCCGTACTGCTCGTCCTCAGCTCGTGTGTGtgcctgactgtgtgtgtggagaacgCAGACACTCCGGCTCCTCGGATGGTGACAGAGCGACAAGGCAACTCATCGTCTCCCACCGAAGCCTCTCAGagtacagacagacacagggaTGCTTTTAAACAAGAGCAGGAGGATAACAAGGAGCCAAGATCCTCACACAGAGACGAGATTAAAGGCAGTGTCTCAGAAAGCACCACGTCTGCACTTTCCCTTCAGCAAAGCAGCAAAAACTCTAATCTAGGCTCAAAGACAGACACCACAATCGATTCCACCGATATCCCAAAGCCCCTGAGTTTCCAGGAAGTGATGAATGGAACAGTCCGTCTCTCCAGGAGACGCAGGAGCTGGATCTGGAACCAGTTTTTCGTTATCGAAGAGTACAGTGGACCGGAACCGGTTCTGCTCGGACGGcTGCGCTCCAGTGTGGACCGAGGTGATGGGCGTGTCCTGTATGTCCTGAGCGGTGAGGGGGCAGGGTCAGTGTTTGTGATTGATGGCCGAACAGGGAACATCCATGTGACAAAGCCTCTGGACCGCGAGCAGAAGGATCAGTACAGGCTCGTCGCCACGGCAACGGACCAGCGGACGGGTCGCGTGCTTGAGGCCTCGTCCCAATTCACCATCAGAGTGCAGGACATAAATGACAACCCACCTGTGTTCAAGCACACGCACTACATCGCCAGCGTGCCTGAGAGAGCCAGcgctgGGACGTCTGTGATTCAGGTGACAGCGACAGACGCAGACGATCAGTCGTATGGGAACAGTGCGAAGCTTGTTTACTCCATCATCCAGGGCCAGCAGTATTTCACTGTGGACCCGCAGTCAGgtgtcgTGCGGACTGCGGTGTCTGACATGGACAGAGAGCAGCAGTCTCAGTACATCGTGGTCTTGGAGGCAAGAGACATGGCGGGACATCAGGGGGGTCTAACAGGAACAACCACCATCACTGTGCACCTCAGCGACGTCAATGACAGCCCGCCACGCTTCACTCAacgcatgTGGACGTTCTCGGTGTCAGAGTTAGCACTCTCCGGTGCTGAAGTGGGCCGTGTGAGTGCTACAGATGCTGATGTGGGTGAGAACGCTCGACTCGAATTTACCATTTTGGACGGAGATGGGGAGGAAATGTTCAACATCACAGAACTGAACCAAGAGGGCGTGATTTTACTCAACCAGGCATTAGACTTCGAGACATGCAGCTCGTACACACTCTCGGTGGAGGTCCAGAACCCGAGCTTGGATATGCGCTTCCTCCGTGGTGGTGTGTTTAAGGACGAGGCGGTGGTGAGGATCGCCGTCCTGAACGCAGACGAGCCGCCGCACTTCACTCGCGATCATTACACGCTGAACATCACGGAGAACTGCAGAGTGCCGTGCAGCGTGGGACGAGTTCACGCCGTGGACCCCGATACAGGACACAGCACCAATATAGagtactCGATTGCCCCTGCGTCTGACCCCGGGGCTGTGTTTCGTATCTCTCCTGTTAGTGGCCTCATTACCACGGTGAAGGTGTTGGATCGAGAGCGTGAGCGTGAGCAGTGGCACAACATCACCGTCACTGCCACTCAGAGAGACAGCCTCAATCAGGTTACCAGGGTAGTGGTTGCCATAGAAACGCTGGATGTGAATGACAACCCCCCTGAGCTGGATGGACCATATGAGACGGCAGTGTGTGACACCAGCACCGCCGGACAGgtggtgCAGGTGATCCGAGCTATAGACAGAGACCAGATCAGCTCCAGTTTACCCGTACACTTCAGTGTGTCTTCACACAGCAGCCTGTCTCTGAACTTCACCACTCAGGCGAGAGGAAATCACACAGCCAATCTGCTGCTCCTGTCCTCTCTGAAGCCCCTCCCTCGCCCCGCCTCTTCTCTTTTACACATTGTAAAAGTACCCATAATCCTCCGGGACAGAGCGTCAGAGCTGAGCAGCACTGGGACGGTGACGGTGACGCTGTGCCCCTGTCAGAATGGAGGGATGTGGgtggaggagagaaggagagggatggagggagggaggagtggTGATGGAGAGGTGCTGATGGAGTGGGAGAGACAGAAGGTTTGTTCGTCTCTGCCAACTTCCTCCATGCTGCTGGGCTTCAGCTCGGCCGCCATGTTGGCCATCCTGGCCTGTTCCTCCGTCCTCATGGtagtGGTGGTGTTGTCTCTGTCTATGCGGAGGAAGAAgagtgactctctctctccggtGGAGAACGATGAGATCAGAGAGAACATTATTACatatgatgatgaaggtggaggagaggaagaCACAGCTGCATTTGACATCACTGCGCTGAAGAGCGTCCCACATGCCATACACACGCGAGGTGTTGGTTCCGTCCCGCTGTACGCTCCTCTGTGCTACAGCATACACACGGCGAGCGAGAGCCCGTTTGGCCGGTGTGAGTCTCGGCTGGACCGGGATAAacccgcacacacactccccagCGGATACACACTGAACATGGGGCTGTTAGAACCAGGTTCTACTCTCACAGAACCGGCTGAAGAGTGTAAGAGATCAGATCAGAACAGGACTGAAGATTCTGCTGATATCATGCTGAAAAAGAGGCaggcaggaagtgatgtcatcaCTCAAGATcagTCTCCGTTAATCCTAAATGACTCTGCAGATCATCTGGTCGCATCTCGTACAGCTCACCTCCACTCCTCCGTCTCCTCATCTGTCGCTCCAGATGACATCACGCCTCCGCACAGCACAGGAAACAGCACAGCTCCGTTCAGAACCATGGAGGGAACGTTACTGAGAGCTGGAGGAGGGATACATCTGACTGGAGCTCCTTTTTTGTACCTGAATACAGGACAGGACTACGTTCAGCACCTGGTCGGGCTACATGTTGGAGGGCGGAGCTTCTTTAGACCTGATTTAGGGGGCGTGGCTGTCCCTGTGACTCTTAGAATAGATGAATTACTGCAGCACCGACTCACCCgagtgacctttgaccccatgCAGCCTCCGTACGATTCACTGCAGATGTATGAGCACGAGGGGGCAGAGTCAGAGACCGCCTCCCTCAGCTCTTTGGAGAGTgaaggagatggagggatggagggagaggggTTAATTGATTGGGGGCCCAAGTTTAACAAGCTGCTGGAGATCTTTAGAGAGAGGGAACaggagaaagatggagagaagaaagaggaggaggaaacgGAGGAGAGACAAATACATGGAGAGCAGCAGAAGAGTGTGGAGGACATGGATGGAAAACAAGCAGTACAGAAGGAACTAGATAGCAGAAAGGATGGAGAGAATAAAGAATGATTTCTCttcagagagaggagaaagcGTGATAGAACAAGTTGCTGGAGAACATGAGAGATGATGGAATTATAGGCAAGGAAAAAGAGGAGGGGCGAGGAGGTTAAGCGAAAAGAAATAAGCTTGttaatggaaagaaagaaagaaagaaagaggaagataGAAGGGTGAGATAGAAGACGAGAGAGGAGGGTTGAGCTGGTGGAGATCTTTAGGGAAAGAAGAGTGAGGTgagatgagaaaagaaagaagaactgAGGTGAAGGGACGAATGGAAGAGAAGAATAAACAGGCAGGAAGGGGAGGCAAAAAGAAATAGAAGGTGGAaggaagagacagagggagagagatggaaagagagagggacagagaaagagcaaaGGCTATTCTAGCGATCATAGCTATTGTGTGCCATGGAGGTTGAACAAAGTTGCAGGCAGAGTCTCAGAAAGCTGTCGATCAAgtgtgctcattagaatattaggccacgcccacacctAAAGACTGAGTTCAGCTGCTGTTTGAGTGTTTATgacatttcttttctctctataATATAGCACTGAAGTTTGATTTCATAcaaacatgtttaatattttacacctCCTTCCCCACGACTGTGAGAGATTACAGAGTGAGAAGTTACAAAACAGCTGAAATATTGATCTGGCCATGCGAGCAGCATTgtgttaaaaaattaataaataaaatgggcCTCATAAAAAATGCACGGTCCTCCAAATCCAAGGAAATAGAAACGTCTGTCCCACAGGATAGAAACAAAAATCAGGTTTTAGGCAGAGCAAGAATAAAAGTGTTCCTTTAGAGAAAGTCACAAGTGAACCTGCATgcgcacacaccacacacacacacacacacacacaaacccttcTGTATGTGCATAACTTGGTAAAACTCCTTCCAACGCCCTTCACTTGACAGAGCCAAACTCCAGACGTTACACATCACTAGTGAGCGAGTGAGAAATCAAGCTCATGCTAAACTATTTAGTACACAAGAAAAAGTGTCTTATCAGTCAGAAAAGCTTTCAGAATGTCTTCCATTCTTCCTTCCAGGCTTTATGTATCTCCAGTCAGTTGCTTTTGTGCTGTGATTATTAAGCAGCATTTGAAGAGCTTTAGCAACCTCATTGTTCTCCATTTCCATCTCGAGGAACAGACAGAGGAACACGAGTGAAACAAGCGAGGCAGCAAAATTCACAAACTGCTGCAGATCTCTCAGATCTCTCTCAATCctttattaataatgcattataaatgcattcataACATCTTATATGATTCGTATAATTACCTTATCATGCCTGGCTTAAGcctgtaaaaatgtgtataaattatAGTTACTATAATTGCACTTTATAACACGAGTGTATGACTTCATCATGCCCCGCCCTCCACATAACACATTATGATATCTGTACATAAGGAGTATTAATGTTATAAtacacgttatcgtttctatagtaacggctcattcccagggacttgtacagcaaacactccactgataataaacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308500 lncRNA downstream 5257 24302005 ~ 24316415 (-) False reps2
TU308533 lncRNA downstream 15002 24305229 ~ 24306670 (-) True G260581
TU308490 lncRNA downstream 95714 24213334 ~ 24225958 (-) True G260548
XR_004579699.1 lncRNA downstream 181566 24136489 ~ 24140106 (-) True LOC117599232
TU308266 lncRNA downstream 346089 23974201 ~ 23975583 (-) False LOC113530810
TU308888 lncRNA upstream 10095 24350255 ~ 24435098 (-) True G260823
TU308898 lncRNA upstream 31896 24372056 ~ 24435869 (-) False G260823
TU308915 lncRNA upstream 42358 24382518 ~ 24383732 (-) False LOC113530517
TU308907 lncRNA upstream 47346 24387506 ~ 24409038 (-) False G260823
TU308927 lncRNA upstream 108398 24448558 ~ 24453499 (-) True G260833
XM_034311811.1 mRNA downstream 6562 24273737 ~ 24315110 (-) False reps2
XM_034311814.1 mRNA downstream 25925 24273737 ~ 24295747 (-) True reps2
XM_034311815.1 mRNA downstream 25926 24273737 ~ 24295746 (-) False reps2
XM_034311813.1 mRNA downstream 25926 24273737 ~ 24295746 (-) False reps2
XM_034311810.1 mRNA downstream 25927 24273737 ~ 24295745 (-) False reps2
XM_034311958.1 mRNA upstream 11735 24351895 ~ 24370680 (-) True LOC113530519
XM_034311957.1 mRNA upstream 34113 24374273 ~ 24386255 (-) True LOC113530517
XM_034311956.1 mRNA upstream 47652 24387812 ~ 24447327 (-) True LOC117599267
XM_034311961.1 mRNA upstream 55969 24396129 ~ 24402716 (-) True LOC117599268
XM_034311960.1 mRNA upstream 82865 24423025 ~ 24429005 (-) True LOC113530518
TU308180 other downstream 557509 23763674 ~ 23764163 (-) True G260310
XR_004579695.1 other downstream 1081326 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 1872245 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 2367067 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 2966975 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579755.1 other upstream 161573 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 165468 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 447530 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309105 other upstream 540798 24880958 ~ 24883145 (-) True G260947
TU309088 other upstream 644299 24984459 ~ 24990531 (-) False si:ch211-149b19.4

Expression Profile