RNA id: XM_034311590.1


Basic Information

Item Value
RNA id XM_034311590.1
length 3495
RNA type mRNA
GC content 0.49
exon number 19
gene id ddx58
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24624937 ~ 24636129 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGAGACAGTCCAGAGACAGTGCAGAGACAGAACACAGATAttagagagacagaacagagtCCAGTGGATCATGTACGAGCTGGAGAAGGAGTCTCTGCGGCTCTACAGCCACTACATCGCTCACTTTTTGCGACCCTCTTACATCCGGGGATTTTTGACAACCTACCTGGATGAAGAGTGTGTAGAGAAGATCTTATCGGAGGAGAAGTTGTCACGGACGGCGGCGGCTCAGACGCTGCTGGATAAGATGTTGGACCTGGAGGAGGCCGGCTGGTTCCAGGGCTTCCTGGACATGCTGCAGGTTTCAGattacACAGGTCTCCACATGGCGATCAGTAAGTGGGACTTTAAGGAGCTGGAGGATCTGTGTCCTCACAGGAAGCTGCTGGATCAAGTTGAGATGTCCATCACCAAAAACATGAAACCCAGAGAGCTGCTGCCATACATGAGCTGTCTCACAAACCGAGAGTGTGAGGAGATCAGAGCGgtggaggagcagaaggggtgtGTTGCAGCGAGTGAGCTGTTAGTGGACACTCTGAGACACTGCGATAAATCAAACtggtttaaagtgtttaaactCGCACTGGAGAACTGCAGCCAGAATCTCGCTCTACAGCTGCTCGAGCccgatgaGAATGGGAATTGTGTTCAGGACTATGAAGAGGTAGTCATGCCAACGGTGTGTTTCGAGTACAGAGAGGACGGCGAGAGCGACAACctgatgagcagcaacagtgTGACGAGTGTGACTGAGCAGCGTGTCAAGGATGCggaggggggcgtggccagtgTGGgtgagagacatacagagaagAAGTTGAGAGAGTATCAGAAAGAGCTCGCTGCAGCCGCATACAGCGGCCTCAACACCATCATCTGTGCTCCCACAgGTTGTGGTAAAACTATTGTTGCCGTGGCGATCTGTGAACATCACCTGAAGAAATATCCTGACAAGGCCAAAGTGGTTTTCATGGCAACCAAAGTGGAGGTTTATGAACAACAGTACAAACTGTTCCAAGAGCACTTCAGCAAGGATCCGGACatcaaggtgaaaggtgtgtgtggggACATGGGGGACGTGAATCTGCCCACCCTGGTGTCCAGCAATGACGTGTTGATAATGACTCCCCAGATTCTGGTGAACGCTCTGCAGCGTGGTGATGTGACCTCTCTGAACACcttcacactgctgctgctggacgAGTGTCACAACACCACCGGCAAACACCCGTACAACAACATCATGAGCCTCTACATCGAaaccaaacacaccacacaaaaaAACTCACTGCCTcaggtggtgGGCTTCACTGCGTCTGTTGGTATCGGGAGTTTTAAGAATGTGCCCGAGGCTGAGAACAACATCTGCCAGCTGTGTGCTAACCTGGATGCCCGGGTCATCACCACGGTTACTAATAATATTGATGAGCTGAGGTTATTTGTGCACACACCTGAGAAAGacttttttccGGTCCCACCACGCACCTCAGACCCCTTCATCCTCATCATTAAAAACATCATGAGGAACATCGAACAGCTGGCTATAAAAGTCTACAACATTGgcACAGTGTCCCAGGTACAGAGAGGTGATTATGGCAGTCAGATGTACGAGCAGTGGATTGTGGATGTACAGAAACGCTGCACACTGCTACAGTTCACTAACGCTGAGGAGGAGCGCAAAGTCTGCAGAGCACTATACACCTACACTGAGCACCTCAGAaaATATAACGACGCTCTGATCATTAACGAGGACGCTCGCACTAAAGACGCGCTGGACTTCATGGACTCGTTCATCAAGGACATCAGCAACGCCGCCCCAGACCCCACCGAGCGCCAGCTCATTGACTTATACCACGCTCAGCGTGAGCAGCTGCGCCATTTAGCCGCTGAAGGAGAACAAAACCCCAAACTGCAGGAGCTCAAGTTCATCCTGGATGAAGAATACAGCAACAACGAGCAGACTCGCACTGTGCTCTTCGTCAGGACTCGCGCCCTCGCTGATgctctGAAAAAGTGGATAGAGGAGACAGATTCACTGAAGTTTCTGAAGCCTGGAGTTCTGAttggaagaggaagaaaatcaCAGCTGACAggctcaggtatgacTCTGACAGGACAGAAGGGTGTGCTTGACTCCTTTAAGAGCTCTGACCAGAGTAAGATTCTCATCGCCACCTCCGTCGCTGACGAGGGCATCgatatcccacaatgcaacCTGGTGCTCATGTACGAGTACGTCGGCAACGTCGTCAAGATGGTGCAGGTTCGAGgtcgGGGCAGAGCTCAGGGCAGCAGGTGTTTTCTGATCTCCAGCAGGCAGGAGCGCATTGATAAAGAGAAACTGAACATGGACAGAGAGAAGCTGGTGGACGCGGCCATTAAACTCCTGCAGAACTCACCTGAGCGCCTGTGTGCCAAGGTGTCTCacctctcacctGAGGACGTGGCCCGGAGAGCCCATGCGAACTCGAGTGTAGAGAAAACTCTGACTGAGGGAAGCTACGAGTTCCTGTGTGGAAAGTGCAAGAAGTTTGCCTGTTCTAGTGATGACCTGCGTGTGCTAAAGGAATCTCACCACGTGGTGCTGGATCGCTCCATATTCCAGCGCTGTGACACTAAACCTCACAATAAAATCCAGACCTTCGACAACATCACCAAAAAGGAGAAGATGTTTTGTTCTGACTGTAAACATGACTGGGGCATCATCGCCTCCTACATGAATATAGagaatTTGCCGGTGGTGAAGATTGAGGCTTTCATCCTTCAGGACCGAGACACGAAGAGACTGCAGATTTTCAAAAAATGGCGTGACGTCACGTTCCGTATGCGAGAGTTTGACGTGTCCGAGATGACGGTGGATATGCGGGAGCCAAGAACATAGAGACAAAAACGAGATGATAAACATCTAAAACTgccagtctcacacacacacacacacacacatttgtactAATATCATAGGGTCATGTTTACTAAGGCGAATACTATTTACTGGAGTTTTAGTGATGTGTTGCACTGGTGGGCGGAGCCAATGTACTAGGCAAATTAACATAGAcaaggtgggttttttttcatgtattgtGGGGTTTTGTTACGACGTTCTTGTAACGTTATTCTTCTTTTGAAATCACACACAACCCGAAAacgatctgattggctgaagcaAGTCACTGATTAAAACTCTGGCATTTTTTAGTTTCCTCAAATAACTTCAGGAAGCAATATAGTTGCAAAATCATTTTGCGAAATCACAAAGTCAGTAATTATTGAACAGCTATTGGCTTTGATCAATGAGAATGGGCGGGTCATTAAATTAAGCCCCGCCCCCGTGCTGTTGTTTGAGACGGAAAGTGCACAAGAGTAGCGACGCCCCTTTGATCTTATTCTCGACAGTCACATGGTTTTTAACCACAAAATAAAGTTTGtgatgatttttacattttttactcaCAACCTGAAAcctcaataaaatattttaattttaaacata

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K12646 DDX58, RIG-I; ATP-dependent RNA helicase DDX58

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308680 lncRNA upstream 7720 24616168 ~ 24617217 (+) False G260677
XR_003403185.2 lncRNA downstream 69158 24705287 ~ 24706115 (+) True LOC113530849
TU308703 lncRNA downstream 89718 24725847 ~ 24728397 (+) True G260691
TU308704 lncRNA downstream 89718 24725847 ~ 24728397 (+) False G260691
XR_004579759.1 lncRNA downstream 99594 24735723 ~ 24736373 (+) True LOC117599308
TU308715 lncRNA downstream 109652 24745781 ~ 24751808 (+) False G260697
XM_026920934.2 mRNA upstream 1132 24618620 ~ 24623805 (+) True LOC113530697
XM_034311609.1 mRNA upstream 11848 24599158 ~ 24613089 (+) True LOC117599218
XM_026920655.2 mRNA upstream 96022 24520879 ~ 24528915 (+) True LOC113530532
XM_026921357.2 mRNA upstream 171399 24448602 ~ 24453538 (+) True rnf146
XM_034311962.1 mRNA upstream 171399 24449950 ~ 24453538 (+) False rnf146
XM_034312211.1 mRNA downstream 44491 24680620 ~ 24689895 (+) True LOC113530267
XM_026920325.2 mRNA downstream 56902 24693031 ~ 24698433 (+) False aimp1b
XM_034311635.1 mRNA downstream 56998 24693127 ~ 24698433 (+) True aimp1b
XM_026920324.2 mRNA downstream 56998 24693127 ~ 24698433 (+) False aimp1b
XM_026920328.2 mRNA downstream 56998 24693127 ~ 24698433 (+) False aimp1b
TU308384 other upstream 355670 24268577 ~ 24269267 (+) True G260483
TU308306 other upstream 592213 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 1235623 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 1241284 23371747 ~ 23383653 (+) True LOC117599309

Expression Profile