RNA id: XM_034311607.1


Basic Information

Item Value
RNA id XM_034311607.1
length 2270
RNA type mRNA
GC content 0.50
exon number 5
gene id march9
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20737744 ~ 20751871 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttgcatagcCGGATATCACCAACCTCCCTCTTTTTTAAAACCCGGACCAATGCACTGacgctttctttcttttcttcttcttttcttcttctttttgctcCAGTGAGACGGGACAGAGGCTTGAAGAGACTCTCGGATCGCTGCTGTGCTTTGATGCGGCGACGCGCCTGCTCTTCTTTacacataaacattttaaagagcGCATCAGTCGCTCCGGGCCGGAAAATCTCTCATCCGCACTAACATGCCATCAGACAGCAAATAAAAAGCATTGTAGTCTGTCTCGGGCCGTTTCTGGATCCTGCTGTGATATTACACGCTTATACCTTTATTCCCTGAGTAACAAGTAACGAGAACAGGCCTGCAGGTCTTCTAGAAAACACACCTACcaccagtaataataataataataataataatataataataataataataataataataataataataatattacatgtCAACACAGTAATCCGCGCGCTCCTTTTCACCTCTGGCGCACACCACACGCATGTAGTGAAAGATGTTCAAGAACCGGATCCGCATGTTTTTCAACGAGCTGAAGCTCCTGGTGTTCATGCGGTCCGGTCCTCGGCAGCCCGGCGTGGACGCAGGCACGAGTATGCGGGGCCTGGGCGCTATGGGCGGCTGCGGGTGGCGTGCGTTCTCCCGCTGCACCGGCGACCACGACCACGACGCTGAGGAGTACTACGGCAGCGATGCGGGCGCGAGGCGGAGCGCGGCGGCGGCGGGACTGGACGAGGGGACGCGCGTGCACGCGAACGCGGACGCCGTGTCCCTGAGCAGCGGAACCCGCACACCCCAGTGCCGCATCTGCTTCCAAGGACCTGAGCAGGGGGAGCTGTTGAGTCCATGCCGCTGTGACGGCTCAGTGCGCTGCACCCATCAGCCGTGTCTCATCCGCTGGATCAGCGAGAGAGgctcctggagctgtgagctcTGCTACTTCAAATACCAAGTGCTGGCCATCAGCACCAAAAATCCACTACAGTGGCAGGCCATCTCTCTGACCGTGATCGAGAAGGTGCAGATCGCCGCCATCATCCTCGGCTCGCTCTTCCTTATCGCCAGCATCTCGTGGCTGGTGTGGTCGTCGCTCAGCCCCTCGGCCAAGTGGCAGCGGCAGGACTTGCTCTTCCAGATCTGCTATGGCATGTATGGCTTCATGGACATTGTGTGCATAGGCCTCATCATCCACGAGGGTTCATCGGTCTACCGGATCTTTAAGCGCTGGCAAGCTGTCAATCAGCAGTGGAAAGTATTGAACTATGAAAAGGCCAAGGACTTGGGGGAGCCGATTAGTTCGAGCAGTAAGGCGACGGCGCGTGGCTCGCGCTCCAATCCTCACAGCCTGGGCAGTGGCAGCAGGAGGAATCAGCGCATTCGGAGGCTCAGGACTATCCTCAACCACCACTGCGGCTACACCATCCTGCACATCCTGAGTCAGATCAGGCCCAGCGAAGCGCGCCTCGCCTCCAACTCCAACCGCGAGGTGGTCATGAGGGTCACGACTGTATGAGGATGGGGGTGCACTCGCTCTAAGCTGCTGAGACACAGTGTGCAAAGACTTGTCCTGAGCAGCAGCTGTGTCGTGACTCATCAGATGACGTCTCGCTCTTGTTTCCTGAGCTGAGTGAAACATGCACTTGTCATAACTGAGAATATTAACATGCTGAAAAGGATGAACTTTGGAATTAAATGGTTcataaaatgaaacacacaagaAAGAGGACTGTCTTCGTGATCTGGCACACAAGCGCATTTTTATTTCGTCTCCTCTCTGGTGTCGTTTTATACCACTATGGTTTTTACTATGTTTCATTTTCTAAGGGCGTGTGGTTTTATGAACGGACGCTGCTGTACTGAATATAATGGCTTAAAAAAAGGACAGTGATGTTTACCAATGCTACAATtgagcaaggaaaaaaaaaaactaaccgTAACCAAACCGTGACAAAGGCACAACAACCAGGGAGCAAAGAATTCTTTACAATATaccaataaatacatttaacgAGAATATCATGAAGGGTAGGGTGCAATAAGATAAATAAAGGGATTATAACAGAGTGTtaagtacattaatatttaaaggaTTGGATTTTCTCTGCAATAAAGATACCTGTACATTTTGCAGTGAACTTTGCATGAGGGTAAAGTTTTGTGCCTCCTCAACATGAGGATATGATGAATCTGTTTTCATTTCGAATGGTGCttgttttaataaacactgctaTTCATCA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10659 MARCH4_9_11; E3 ubiquitin-protein ligase MARCH4/9/11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579729.1 lncRNA upstream 25786 20708115 ~ 20711958 (+) True LOC117599266
XR_004579728.1 lncRNA upstream 38076 20696985 ~ 20699668 (+) True LOC117599265
TU305792 lncRNA upstream 56806 20663682 ~ 20680938 (+) True G258273
TU305646 lncRNA upstream 80677 20611541 ~ 20657067 (+) True G258162
TU305640 lncRNA upstream 160955 20567790 ~ 20576789 (+) True G258156
TU305794 lncRNA downstream 2821 20754692 ~ 20756538 (+) True G258275
TU305900 lncRNA downstream 34371 20786242 ~ 20790145 (+) True G258362
TU305939 lncRNA downstream 151276 20903147 ~ 20907459 (+) False ubxn10
XR_004579744.1 lncRNA downstream 156945 20908816 ~ 20911082 (+) True LOC117599282
TU305997 lncRNA downstream 224027 20975898 ~ 20976359 (+) True G258439
XM_026921277.2 mRNA upstream 7811 20719865 ~ 20729933 (+) True tspan31
XM_026920339.2 mRNA upstream 46130 20689186 ~ 20691614 (+) True LOC113530407
XM_026921045.2 mRNA upstream 50966 20684365 ~ 20686778 (+) True LOC113530755
XM_026921162.2 mRNA upstream 57674 20668113 ~ 20680070 (+) True pip4k2ca
XM_026920287.2 mRNA upstream 71687 20661406 ~ 20666057 (+) True igfbp6b
XM_034312195.1 mRNA downstream 131821 20883692 ~ 20886509 (+) False LOC113530777
XM_026921092.2 mRNA downstream 131993 20883864 ~ 20886509 (+) True LOC113530777
XM_026920955.2 mRNA downstream 148251 20900122 ~ 20902771 (+) True cptp
XM_034312060.1 mRNA downstream 151234 20903105 ~ 20905396 (+) True ubxn10
XM_026921039.2 mRNA downstream 151236 20903107 ~ 20905396 (+) False ubxn10
XR_003403172.2 other upstream 223549 20510244 ~ 20514195 (+) False LOC113530729
TU305571 other upstream 339030 20390809 ~ 20398714 (+) True G258096
TU304946 other upstream 1258849 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 1704756 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1826030 18879568 ~ 18911714 (+) False fmnl3
XR_004579743.1 other downstream 151234 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 151276 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 476449 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU306357 other downstream 786383 21538254 ~ 21542254 (+) False LOC117599233
trnal-uaa_2 other downstream 1559935 22311806 ~ 22311888 (+) True trnal-uaa_2

Expression Profile