Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034311610.1 |
| length | 1242 |
| RNA type | mRNA |
| GC content | 0.38 |
| exon number | 6 |
| gene id | ccdc115 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 11256064 ~ 11258687 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0044444 | obsolete cytoplasmic part | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| id | description |
|---|---|
| K23543 | CCDC115; coiled-coil domain-containing protein 115 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU299539 | lncRNA | downstream | 164729 | 11089077 ~ 11091335 (-) | False | LOC113530615 |
| XR_003403161.2 | lncRNA | downstream | 164778 | 11089065 ~ 11091286 (-) | False | LOC113530615 |
| TU299537 | lncRNA | downstream | 165381 | 11089077 ~ 11090683 (-) | True | LOC113530615 |
| XR_003403192.2 | lncRNA | downstream | 217096 | 11037822 ~ 11038968 (-) | True | LOC113530895 |
| TU299474 | lncRNA | downstream | 233039 | 11021959 ~ 11023025 (-) | False | abhd6b |
| TU299705 | lncRNA | upstream | 6222 | 11264909 ~ 11265149 (-) | True | G253174 |
| TU299971 | lncRNA | upstream | 94815 | 11353502 ~ 11354217 (-) | True | G253383 |
| TU299973 | lncRNA | upstream | 100828 | 11359515 ~ 11361585 (-) | True | G253385 |
| TU299972 | lncRNA | upstream | 104285 | 11362972 ~ 11364414 (-) | True | G253384 |
| XR_003403134.2 | lncRNA | upstream | 197333 | 11456020 ~ 11462531 (-) | False | LOC113530309 |
| XM_026920565.2 | mRNA | downstream | 1458 | 11247652 ~ 11254606 (-) | True | si:dkey-109j17.5 |
| XM_034311770.1 | mRNA | downstream | 2521 | 11247652 ~ 11253543 (-) | False | si:dkey-109j17.5 |
| XM_034311771.1 | mRNA | downstream | 2522 | 11247652 ~ 11253542 (-) | False | si:dkey-109j17.5 |
| XM_026920567.2 | mRNA | downstream | 13760 | 11238252 ~ 11242304 (-) | True | apobec2b |
| XM_026920729.2 | mRNA | downstream | 140391 | 11114279 ~ 11115673 (-) | True | LOC113530590 |
| XM_026920309.2 | mRNA | upstream | 15403 | 11274090 ~ 11277676 (-) | False | fkbpl |
| XM_026920307.2 | mRNA | upstream | 15403 | 11274090 ~ 11277121 (-) | False | fkbpl |
| XM_026920306.2 | mRNA | upstream | 15403 | 11274090 ~ 11277119 (-) | True | fkbpl |
| XM_026920308.2 | mRNA | upstream | 15403 | 11274090 ~ 11277117 (-) | False | fkbpl |
| XM_034311599.1 | mRNA | upstream | 15403 | 11274090 ~ 11277117 (-) | False | fkbpl |
| TU299470 | other | downstream | 240434 | 11013964 ~ 11015630 (-) | False | LOC113530950 |
| TU299234 | other | downstream | 617346 | 10636523 ~ 10638718 (-) | False | sinup |
| XR_003403171.2 | other | downstream | 786530 | 10460694 ~ 10469534 (-) | False | usp21 |
| TU298725 | other | downstream | 1226071 | 10029492 ~ 10029993 (-) | True | G252373 |
| XR_003403155.2 | other | downstream | 2677464 | 8566656 ~ 8578600 (-) | False | ttll10 |
| trnae-uuc_4 | other | upstream | 356 | 11259043 ~ 11259114 (-) | True | trnae-uuc_4 |
| trnan-guu_24 | other | upstream | 14643 | 11273330 ~ 11273403 (-) | True | trnan-guu_24 |
| TU299993 | other | upstream | 197334 | 11456021 ~ 11462706 (-) | False | LOC113530309 |
| TU299994 | other | upstream | 197334 | 11456021 ~ 11462706 (-) | True | LOC113530309 |
| TU300077 | other | upstream | 298200 | 11556887 ~ 11568530 (-) | False | avpr2ab |
