RNA id: XM_034311612.1


Basic Information

Item Value
RNA id XM_034311612.1
length 2887
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC113530514
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22671398 ~ 22680542 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtggatataatTATAGCCAGGGATGTGGCAGAGGAGTACAAAACCAGGGAGAGAAAGATACCCTGGTCCACTATTCTCTGAAATACACTCAGACCCAAACAGTCAGCATGTTTTCAAGCACCAGCTGGATTCGTTCCCTGTTCAGCCGCTTCCCCTTCATCACAGGAGGTGACGTCGTAGACACAGTACCAGCAGCAGATCGAAATCGTCGCATGTTTGGCCGCTTCCCCTATGTCACACATGATGATGACTTTGTAGGCCCACCACTGACAGCATATCATGGGACAAACTATGGTCAGTTATCAGTGCGCTCCATAGACCTCCTCAAGTCGAAAACAGGCCAAAACCGCCTGGAGCATCACACGGACCGTTACCAAAGCGATAACCTCATCATCCGTCGAGGGCAGAGCTTTCAGATGTGGATAGAACTCACACGCTCTTTTAACCCCAAATCTGACAAACTACACCTCGAGCTCAGGCTAGGCCTTATTCCAATGTTATCAAAAGGCACCCTTGTGATTGTTCCTCTAGTTGACAAGTTAGAGAACAAGAGCTGGGAGGCCAAGATTATTGAACAGACAGACACCAGGATAAAACTGTCCGTCAACACCCCGTCAAATGCTCTCATTGGTCGCTATGAGCTCAGTGTGATAACATGGACCCCAAAAGGAAGCAATACGTATAGTCGCAAGCCTGAAAATGATATCTACCTGCTGTTTAACCCCTGGTGTAAAGATGACTCAGTGTTTATGGATAAAGAGGACGAGAGGAACGAGTATGTTCTGAATGATGTGGGAACGCTCTACTATGGAAGCGACAGTCAGATTGGAGCCAGAACCTGGATCTTTGGACAGTTTGCTGATGGGGTTCTTGCTGCATGTCTGTACATACTGGAGAAGACTCCAGCACGTGCTTCAGGTTGGGGAGATCCTGTTAATATTGTCAGACTTGTGTCAGCCATGGTCAACTCTCCAGATGATCAAGGTGTGCTGGAAGGGAATTGGTCGAATAACTATGAGAACGGGACGTCCCCAACGTTGTGGAATGGCAGTGTGGAAATTCTGAGGCAGTACCACAAAAGTGGAGGAAAGCCTGTTAAATATGGCCAGTGCTGGGTCTTTGCAGGGGTCACCACCACAGTTCTCAGGTGTTTGGGCATTCCCACCCGCTGTATCACAAACTTCAGCTCTGCCCACGACACGGATGTTTCCTTGACAACCGATGTGTATTTTGACGAGAAAATGAAGCCAATTGAGAGTCTCAACAATGACTCAATTtgGAATTTTCACGTGTGGAATGAATCCTGGATGGCCCGGCCTGATCTACAAGTAGGCATGGGGGGTTGGCAGGTGGTGGATGCCACGCCTCAAGAGACAAGTCAGGGCACATTCTGCTGTGGCCCTACCCCTGTGGCAGCCATCCGTGATGGACTGGTCTACCTCAAATATGATGCCCCCTTTGTCTTCGCCGAGGTGAACAGTGACAGGATCTTCTGGCAGAGACAAGCTAACGGCACCTTCACACAGATCTACAATGAGAAGAATGTGGTGGGCCACTACATCAGCACCAAGGCAGTCGGGGCTGACTACAGAGTGGACATCACACACCTGTACAAACACCCAGAAGGGTCTGAAGCTGAGCGAATTGCTGTGGAAACTGCTTCCCGCTACGGCTCCAAGCCTAATGTCTACCCCTCTGCTGTGGCCAACGATGTCAAATTTCAGGTCTCTGTGGAAGGGGAGGGGCCGTGGGTGGGTGAAGATGCTCGGCTGTCCTTCACCTTGAATAATGGCAGCTCTGAGAAGCGCAGTACCAAGCTCTACTGCCAGGTGGCGATCATGTACTATACTGGAGTGCTGAAAGGCACAGTGAAGAAGGATGAAATAGTGGTGACGCTCAAACCCAGAGAAGTCCAGACACTAGCGTGGACCGTTCCGTATGACATGTATAAGGACCAGCTGGTAGACCAGGCGGCGCTGATGCTCACCGTGCTTGGCCGAGTCAATGAGACCCAGCAGGTTCTGGCGACCCGGTTCAACTTCCGCCTGCGCACGCCTGACATCATCCTCACCCCTGTAGGAGATGCTGTGGTGGGGAAGGAGATGGTGGCTAAAATCACATTTAAGAATCCACTGCCGCACATCCTGAAGAACGTCACGTTCCGCATCGAGGGCTTGGGCTTGCTGAACGCAGAAGACATCCTCTACGGTGACATTGACAGTCTGGCGACCAGCACGCTGACAGTGAAGTTTACACCCACCTTATCGGGTCTGCGGAAGCTTCTCGCCTCTCTGGACTGCCAGCAGCTCACACAGGTTCACGGTGTTACTGACATCCTCGTCAAgcagaaatgaaaacacacaggagagaaTCAACCTGAATGCACAATACACTCTGTTATCTGGTGCTATGCCTAAAATATGGGAATGACATTGTGCTGCTGATTACTAAAGATTTGAAACAATTTGTCCGACAAGCATTTACAATAGTTTATGACCCCACCTCGACCTTGACACATCATCCTGTGCACATTTGAGTGTTTTCTCCGCGCTGCATCAGTAAGATAACCAGCTGATGAGCCGAATCGGGTGTATTAGACAAACAAAAAGTGCCCAGAGTGCCAAAAGACCACCGATTTGATGTCTTGATTTCCATATATGCAAATTATTCACATGGAACCATCACATACATATCATTTACAAGAACTTAATCaatctattaattttttttattctgatgacACTTATTAGTCACCATACAACCCACAGAAATCCAGTCTGAAGCAAATCACAACATTAATGCCTAATATTCATGTAAtattcacattttgtttattagaCTATCctgattaaaatgtattatgctTTTATACA

Function

GO: NA

KEGG:

id description
K05619 TGM1; transglutaminase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307080 lncRNA upstream 85818 22584557 ~ 22585809 (+) True G259403
TU306925 lncRNA upstream 168722 22502687 ~ 22502905 (+) True G259268
TU306924 lncRNA upstream 190527 22480557 ~ 22481100 (+) True G259267
XR_004579757.1 lncRNA upstream 440947 22227964 ~ 22230680 (+) True LOC117599300
TU306766 lncRNA upstream 520828 22148905 ~ 22150799 (+) True G259131
TU307196 lncRNA downstream 158675 22839217 ~ 22841739 (+) True G259498
TU307249 lncRNA downstream 332842 23013384 ~ 23015896 (+) True G259536
TU307252 lncRNA downstream 341428 23021970 ~ 23022448 (+) True G259539
TU307254 lncRNA downstream 345904 23026446 ~ 23064569 (+) True G259540
TU307418 lncRNA downstream 596892 23277434 ~ 23277909 (+) True G259690
XM_034311564.1 mRNA upstream 4498 22658099 ~ 22667129 (+) True rabggta
XM_026921226.2 mRNA upstream 15583 22643527 ~ 22656044 (+) True stxbp3
XM_034311736.1 mRNA upstream 169975 22315172 ~ 22501652 (+) True utrn
XM_026920699.2 mRNA upstream 362845 22307353 ~ 22308782 (+) True psmb11b
XM_026921431.2 mRNA upstream 394659 22269701 ~ 22276968 (+) True slc34a2b
XM_034311614.1 mRNA downstream 12698 22693240 ~ 22698904 (+) True LOC117595661
XM_026920613.2 mRNA downstream 29451 22709993 ~ 22716146 (+) True LOC113530513
XM_026921103.2 mRNA downstream 41216 22721758 ~ 22735023 (+) True LOC113530788
XM_026920957.2 mRNA downstream 61512 22742054 ~ 22744025 (+) True LOC113530713
XM_026921443.2 mRNA downstream 64524 22745066 ~ 22755933 (+) True gmeb2
trnal-uaa_2 other upstream 359739 22311806 ~ 22311888 (+) True trnal-uaa_2
TU306357 other upstream 1129373 21538254 ~ 21542254 (+) False LOC117599233
TU306101 other upstream 1440756 21228320 ~ 21230871 (+) False si:ch73-290k24.5
XR_004579743.1 other upstream 1764377 20903105 ~ 20907250 (+) False ubxn10
TU307769 other downstream 691205 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other downstream 691205 23371747 ~ 23383653 (+) False LOC117599309
TU307780 other downstream 706996 23387538 ~ 23389314 (+) True G259993
TU308306 other downstream 1351685 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 1588035 24268577 ~ 24269267 (+) True G260483

Expression Profile