RNA id: XR_004579671.1


Basic Information

Item Value
RNA id XR_004579671.1
length 2303
RNA type misc_RNA
GC content 0.50
exon number 15
gene id LOC113530514
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22671398 ~ 22680542 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtggatataatTATAGCCAGGGATGTGGCAGAGGAGTACAAAACCAGGGAGAGAAAGATACCCTGGTCCACTATTCTCTGAAATACACTCAGACCCAAACAGTCAGCATGTTTTCAAGCACCAGCTGGATTCGTTCCCTGTTCAGCCGCTTCCCCTTCATCACAGGAGGTGACGTCGTAGACACAGTACCAGCAGCAGATCGAAATCGTCGCATGTTTGGCCGCTTCCCCTATGTCACACATGATGATGACTTTGTAGGCCCACCACTGACAGCATATCATGGGACAAACTATGGTCAGTTATCAGTGCGCTCCATAGACCTCCTCAAGTCGAAAACAGGCCAAAACCGCCTGGAGCATCACACGGACCGTTACCAAAGCGATAACCTCATCATCCGTCGAGGGCAGAGCTTTCAGATGTGGATAGAACTCACACGCTCTTTTAACCCCAAATCTGACAAACTACACCTCGAGCTCAGGCTAGGCCTTATTCCAATGTTATCAAAAGGCACCCTTGTGATTGTTCCTCTAGTTGACAAGTTAGAGAACAAGAGCTGGGAGGCCAAGATTATTGAACAGACAGACACCAGGATAAAACTGTCCGTCAACACCCCGTCAAATGCTCTCATTGGTCGCTATGAGCTCAGTGTGATAACATGGACCCCAAAAGGAAGCAATACGTATAGTCGCAAGCCTGAAAATGATATCTACCTGCTGTTTAACCCCTGGTGTAAAGATGACTCAGTGTTTATGGATAAAGAGGACGAGAGGAACGAGTATGTTCTGAATGATGTGGGAACGCTCTACTATGGAAGCGACAGTCAGATTGGAGCCAGAACCTGGATCTTTGGACAGTTTGCTGATGGGGTTCTTGCTGCATGTCTGTACATACTGGAGAAGACTCCAGCACGTGCTTCAGGTTGGGGAGATCCTGTTAATATTGTCAGACTTGTGTCAGCCATGGTCAACTCTCCAGATGATCAAGGTGTGCTGGAAGGGAATTGGTCGAATAACTATGAGAACGGGACGTCCCCAACGTTGTGGAATGGCAGTGTGGAAATTCTGAGGCAGTACCACAAAAGTGGAGGAAAGCCTGTTAAATATGGCCAGTGCTGGGTCTTTGCAGGGGTCACCACCACAGTTCTCAGGTGTTTGGGCATTCCCACCCGCTGTATCACAAACTTCAGCTCTGCCCACGACACGGATGTTTCCTTGACAACCGATGTGTATTTTGACGAGAAAATGAAGCCAATTGAGAGTCTCAACAATGACTCAATTtgGAATTTTCACGTGTGGAATGAATCCTGGATGGCCCGGCCTGATCTACAAGTAGGCATGGGGGGTTGGCAGGTGGTGGATGCCACGCCTCAAGAGACAAGTCAGGGCACATTCTGCTGTGGCCCTACCCCTGTGGCAGCCATCCGTGATGGACTGGTCTACCTCAAATATGATGCCCCCTTTGTCTTCGCCGAGGTGAACAGTGACAGGATCTTCTGGCAGAGACAAGCTAACGGCACCTTCACACAGATCTACAATGAGAAGAATGTGGTGGGCCACTACATCAGCACCAAGGCAGTCGGGGCTGACTACAGAGTGGACATCACACACCTGTACAAACACCCAGAAGGGTCTGAAGCTGAGCGAATTGCTGTGGAAACTGCTTCCCGCTACGGCTCCAAGCCTAATGTCTACCCCTCTGCTGTGGCCAACGATGTCAAATTTCAGGTCTCTGTGGAAGGGGAGGGGCCGTGGGTGGGTGAAGATGCTCGGCTGTCCTTCACCTTGAATAATGGCAGCTCTGAGAAGCGCAGTACCAAGCTCTACTGCCAGGTGGCGATCATGTACTATACTGGAGTGCTGAAAGGCACAGTGAAGAAGGATGAAATAGTGGTGACGCTCAAACCCAGAGAAGTCCAGACACTAGCGTGGACCGTTCCGTATGACATGTATAAGGACCAGCTGGTAGACCAGGCGGCGCTGATGCTCACCGTGCTTGGCCGAGTCAATGAGACCCAGCAGGTTCTGGCGACCCGGTTCAACTTCCGCCTGCGCACGCCTGACATCATCCTCACCattcaagaattcagcagagCTGTGTTATAAGCTGGAAACCACGCCTGGATAATCTAATGCAATATTGTTTTTTCACTGAACTCCATACATACAGCCTGTAGGAGATGCTGTGGTGGGGAAGGAGATGGTGGCTAAAATCACATTTAAGAATCCACTGCCGCACATCCTGAAGAACGTCACGTTCCGCATCGAGGGCTTGGGCTTGCTGAACGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307080 lncRNA upstream 85816 22584557 ~ 22585809 (+) True G259403
TU306925 lncRNA upstream 168720 22502687 ~ 22502905 (+) True G259268
TU306924 lncRNA upstream 190525 22480557 ~ 22481100 (+) True G259267
XR_004579757.1 lncRNA upstream 440945 22227964 ~ 22230680 (+) True LOC117599300
TU306766 lncRNA upstream 520826 22148905 ~ 22150799 (+) True G259131
TU307196 lncRNA downstream 159667 22839217 ~ 22841739 (+) True G259498
TU307249 lncRNA downstream 333834 23013384 ~ 23015896 (+) True G259536
TU307252 lncRNA downstream 342420 23021970 ~ 23022448 (+) True G259539
TU307254 lncRNA downstream 346896 23026446 ~ 23064569 (+) True G259540
TU307418 lncRNA downstream 597884 23277434 ~ 23277909 (+) True G259690
XM_034311564.1 mRNA upstream 4496 22658099 ~ 22667129 (+) True rabggta
XM_026921226.2 mRNA upstream 15581 22643527 ~ 22656044 (+) True stxbp3
XM_034311736.1 mRNA upstream 169973 22315172 ~ 22501652 (+) True utrn
XM_026920699.2 mRNA upstream 362843 22307353 ~ 22308782 (+) True psmb11b
XM_026921431.2 mRNA upstream 394657 22269701 ~ 22276968 (+) True slc34a2b
XM_034311614.1 mRNA downstream 13690 22693240 ~ 22698904 (+) True LOC117595661
XM_026920613.2 mRNA downstream 30443 22709993 ~ 22716146 (+) True LOC113530513
XM_026921103.2 mRNA downstream 42208 22721758 ~ 22735023 (+) True LOC113530788
XM_026920957.2 mRNA downstream 62504 22742054 ~ 22744025 (+) True LOC113530713
XM_026921443.2 mRNA downstream 65516 22745066 ~ 22755933 (+) True gmeb2
trnal-uaa_2 other upstream 359737 22311806 ~ 22311888 (+) True trnal-uaa_2
TU306357 other upstream 1129371 21538254 ~ 21542254 (+) False LOC117599233
TU306101 other upstream 1440754 21228320 ~ 21230871 (+) False si:ch73-290k24.5
XR_004579743.1 other upstream 1764375 20903105 ~ 20907250 (+) False ubxn10
TU305940 other upstream 1766552 20903147 ~ 20905073 (+) False ubxn10
TU307769 other downstream 692197 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other downstream 692197 23371747 ~ 23383653 (+) False LOC117599309
TU307780 other downstream 707988 23387538 ~ 23389314 (+) True G259993
TU308306 other downstream 1352677 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 1589027 24268577 ~ 24269267 (+) True G260483

Expression Profile