RNA id: XM_034311617.1


Basic Information

Item Value
RNA id XM_034311617.1
length 1721
RNA type mRNA
GC content 0.52
exon number 13
gene id LOC113525311
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24888734 ~ 24898675 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATTCTATCAGTGGAATTTCTTCACAAGGACAATAagataaacATCAGCTCTGAAGTTCAAAGATCATTCAGAGATCAGAGTGAGCGTGAAGTAGGAACTGCAGGCGTGTGTGAAATCTAGCAGAGTGATAGAGGGAAGAGCTTTGCAGCTGCACAGCTGCGCTGAAACCTGAgttaAAGATGTGTTCCACAGATTCAGGATGCTGCAGCCGAATTCGTTCCTTCCCCAAACCACGAGGCTTTCTCGCCTCTGTCatcacaaaaggtctgcTGGCTTTGCTGCTGCTTGGGGTTTGCTGGTCGGTGTTGGAGAAGGAGTGTGAGCCAGGACACAACATATTCGGTTTGGTGATTCTGTTCCTGAGCGCAGTGTGTGGAGGGAAACTGTTGGGATCAATTACACTGCCAAACCTGCCCCCTATACCACCCCTgctgggcatGTTGCTGATGGGTTTGGTGCTGCGTAATGTCCCGTACGTGAACGAGGCCGTGTTTATCGATCAAAAATGGTCTTCATCACTGCGTAGCATCGCTCTCGCCATCATCCTCACCCGAGCCGGACTCGGCCTGGACCCTGCTgctctGAGAAAGCTGAAGGCGGTGTGTTTGAGGGTGGCTGTGATTCCCTGCACTGTTGAAGCCTGTACTGTTGCCGTTGTATCTCACTTCCTCATGGGCCTGCCGTGGATTTGGGGCTTTATTCTAgggttcgTGTTATCTGCCGTCTCTCCTGCAGTCGTCGTTCCCTCCATGCTGCTCCTGCAGGCTGATGGTTTCGGGGTTCAGAAGGGAATCCCGTCACTCCTCATGGCATCAGGAAGCTTTGACGACATCCTCGCAATTACCGGATTCACCACCTGCCTCGGAATGGCGTTCGGCacgGGCTCCACATGGCTCAGTTTGGCAAAGGGACTGTTGGAGGTGGTGGTTGGGATTTTAGCAGGAGGGATTTTGGGTGTTCTCATCCATTTCTTCCCTAGTGAAgatcaggttgatCTGGTGTTGCGGCGCTCCTGCATGTTGTTGGGTTTGTCcgtgttctgtgtgtttgtgagtcaCGTGGCCGGGCTGGGCGGGGCCGGGGGGCTGAGCACACTTGTCCTCTCCTTCATCGCTGGAATGAGCTGGGACAAAAAAAAGgcTCCAGTAGCTGCTGTTGTTGGGAGGTTTTGGGACGTTTTTCAGCCTCTTCTCTTTGGACTGATTGGAGCTGAAATTACTATTTCTGCACTCAGCCCTAACACTGTGGGTTTAGGAATAGCTGCTCTCTGTGTCGGTGTTGTTGTTCGCGTGTGTGTGACGTTCACTGTTGTTCTGTTTGCTGGTTTTAACCTGAAGGAGAAAATCTTCATCTCTCTCGCATGGTTACCTAAAGCTacagtgcagGCAGCCATAGGTTCCACAGCCCTGGACATGGCACGTAACCTAGGAGACGAGCAGCTGGAGCGTTATGGGATGGACGTGCTGACGGTGGCGGTGTTAGCCATCATGATTACGGCTCCCATTGGCGCGCTCGCTATCGGATTAGCTGGCCCCAAACTGCTGCAGAAATACACTGAGATAGAggagacaaacacacaagAAAAAGCCGAAGATGTTTCACCTCCAGAAATACACGCACAGACACCTCAGGCTGTGGAGAGcaaactataaacacacacacacacacacacacacacacacacacacacacacacacacagctttactctttgcttta

Function

GO: NA

KEGG:

id description
K23994 SLC9B1_2; solute carrier family 9B (sodium/hydrogen exchanger), member 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309098 lncRNA downstream 14987 24870714 ~ 24873747 (-) True G260942
TU309075 lncRNA downstream 23844 24844027 ~ 24864890 (-) True G260921
TU309036 lncRNA downstream 158191 24730292 ~ 24730543 (-) True G260897
TU309034 lncRNA downstream 160365 24725850 ~ 24728369 (-) True G260895
TU309033 lncRNA downstream 163357 24724222 ~ 24725377 (-) True G260894
TU309082 lncRNA upstream 62381 24961056 ~ 24964895 (-) False nfxl1
TU309120 lncRNA upstream 76040 24974715 ~ 24975307 (-) True G260962
TU309132 lncRNA upstream 143476 25042151 ~ 25042595 (-) False G260972
TU309081 lncRNA upstream 144773 25043448 ~ 25046293 (-) True G260926
TU309137 lncRNA upstream 174036 25072711 ~ 25073088 (-) True G260976
XM_026911797.2 mRNA downstream 36867 24836832 ~ 24851867 (-) False tec
XM_026911798.2 mRNA downstream 36867 24836832 ~ 24851867 (-) True tec
XM_034312160.1 mRNA downstream 39872 24836832 ~ 24848862 (-) False tec
XM_026911800.2 mRNA downstream 52006 24828532 ~ 24836728 (-) True si:ch73-106g13.1
XM_026921301.2 mRNA downstream 93311 24789758 ~ 24795423 (-) False si:ch1073-157b13.1
XM_034312224.1 mRNA upstream 23243 24921918 ~ 24929386 (-) True LOC117599306
XM_034312000.1 mRNA upstream 33909 24932584 ~ 24960018 (-) False corin
XM_034311999.1 mRNA upstream 33909 24932584 ~ 24954015 (-) False corin
XM_034312001.1 mRNA upstream 33909 24932584 ~ 24950255 (-) True corin
XM_034312225.1 mRNA upstream 62346 24961021 ~ 24977067 (-) True nfxl1
TU309105 other downstream 5589 24880958 ~ 24883145 (-) True G260947
XR_004579701.1 other downstream 93837 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
XR_004579755.1 other downstream 380267 24501733 ~ 24508467 (-) False tent5ab
TU308938 other downstream 380401 24505628 ~ 24508333 (-) False tent5ab
TU308180 other downstream 1124571 23763674 ~ 23764163 (-) True G260310
TU309088 other upstream 85784 24984459 ~ 24990531 (-) False si:ch211-149b19.4
TU309124 other upstream 91901 24990576 ~ 24999848 (-) True si:ch211-149b19.4
TU309131 other upstream 142116 25040791 ~ 25042595 (-) True G260972
TU309138 other upstream 178145 25076820 ~ 25079027 (-) False LOC117599229