RNA id: XR_004579685.1


Basic Information

Item Value
RNA id XR_004579685.1
length 3558
RNA type misc_RNA
GC content 0.45
exon number 35
gene id LOC113530423
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14128963 ~ 14150581 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGGCGCGTGAGGTTTTTTATTTCCCGCGCAGAGTTTGTGGAGAAAAACAGGCGATTAGAAACAAGTTCTCCTGAACGTCGTTTAACCATTCAGTAGTCGCTTCTGTTCTTCTTATTTAGGCATGTACTTGTTGAAGTATTGTAACTAGAGAGCTGGATTTAATTCGGGTTTACTTTAAGAGTCGGATAACGTTAACGAGCCAGTCAGAGCTGAGGTAACATCCAGATGTGATGTCACCTCATCAGGATAAACAGGTGGAGGAACTGGTAGACCAGGCTTTGAAACACAACTTCAGGGCTTTGGAGGAGTTTTTACTAAATGAGACCAGAGAAGGGGTTACTTCAAAATGCTCCAAACAGTTCATCTCaaaactggacaaactaatTAACAGGGAACTGGACCAGCAGAATGTGAAGAATGCTTCTGTGGTATTTACCATCCTTCACAAATTGGGGAACACACTGATCTTTCCAGGGGGTGGAGGTATATCACTAATGGTGTCACAAGGACTTGTGAAAAAGATGGTACAGTGGTTTGAGAAAGCCAGAAAGTTATGGGTTGAAGCTGGACCGACGAGGAACGAGCTGCTTGTAAACTTAGCTGAAGACTTCTTTGACGCATTGATGGTCATTCATGAAAGTTGTAAAGAGGgTACTTACCAAGTAACAGAATCCCTGCTCCATCACATTGGCAAGTTGGCCTCTGATCCCCAGATTAACATTCTAATCCAAAAAGAGGCGGTGAGGAAACTGAATATGATATTAGGAATGATCCCGTTAGaactgaagaaagagaaaaagatctTGTCATCACAAGAGGCATCAAGTGTCATGAATGAATTGGCTAGTCGAATCCTCAAAGGAGGAGATTATGATCTCCAGGTGGCTTTGATGGAGGCTCTGTGTAGAATGACTTCCCGTGCCCAGCGGAGGGAGCTGGCTGATCAGTGGTTCAGCATGGAGTTTGTTGCCTCTGCATTCACCAAGATTCAGGACTCAGAGTTTGAGACTGATTGCCGAAAATTTTTAAATCTAGTAAATGGAATGCAAGGTGATGATCgaagtgTGTACTCCTATCCTTGTTTGGAGGTGTTTCTGGACAAGCATGTGTTGCTCATGCCTGTGGATGACAACCTTCATGAGTTCTGGATTGACTTCAATCTAGGAAGCCAGAGCATCTCCTTCTATTTCTGTCTTACTGATGATGAGGCAAAGGAGAGCCAGTGGGACACTCTATGCATAACAGAAAATGAAGTCCACAGTTACACAGTGGAAGAGGAGAAAGGTGTAAAAGTGCTGCAGCTGGTTCTAACTGAGCCAGTGTGTCTGAGCAGTATTGAGGGCACCAGACTCACCATCCACTTCAGTTCCTCCTTAGACATCCTCAAGGCCACCAGGAAAGTCTATGGAGAAACCAAGAATAAAAAGTTTATTGGAAAGACCACCACATCTGTGGTAAAAACCACTGTTCAAATAATTCTGGATGAAGGAGGTTCACAGGTTCTTTTTCCTGAGAGTCAGGGCTCCTCTCAGcgcatggaaaaaaatgtgcctTCTTCAGTGAGGAGTGACACCCACTGTCAGTCGCTGACATCCAATGAGAGAGATGCCCAGCACAACAACCAGCAgatgatAACCCCGTTAAGGAGTAAGGTGTCAGAGTCATGTATGTATGTCTCCGGCAGCGCAGGCCGTAAACTTGGCAGAAGCCCCTTCAGCTGCGTGTTGCCTGCATCTGCCCCAGGGAAGGCAAAGGTGAAACCAGCTCTAGAGATGGTAGCCTCCTCAGAGAAGAGGAAAACATTTGAATTGAAAGAGATCTTAACTGCCAAATTACCTCGCGGTGTGAAGTCAGTTAGTGTTGAAAAGGAAAGTGCAAGAAAACAGTCAGGTCCAGCTCTACAGAGCCTGGATATACAACAGGGCCAGGAAGATCGACAAGTGATGGAAAAATACCGCCGGCACATTCCTATAGAGAAGGTAGTGGAAATGGTGCAAACTGACCAAGAGCTGCAGGAAGAGCCTTTGGatAACAGTATAGTACTAGACTCCCAGccagctgtgtggagagaaacctctatATTACCAAGTCCCAACTGCCTTAAAAAGAGAATTTCTGTGTCTGGGTCATTATTCCCATGTCATGAACCTTCACATCAGTCCAAATCAGAGCCTCCACAGCAGCCATTGTCAGCCCAGAGCAGCTCTGGAGGACTGAGCCACAAACAGCTTCATGCTCAGCTCACTCAAAGACTGCAGCAAGTGCTGAGAGAGCGTGAGCAGCAGGAGCAAAACCCACCGGAGCTTAGTGATGCTGGTAAAGATGCTGGAGTTGTGAAAAAGCCACTGAGACCAACTCAAACTAAACTCGGTACAGCTGAACAGAGTGGATGGGCTAAGGGCAATGGGGCTGACAAGAGCAACAATACGaagacaaagaaagcAGCTGAGAGCATGGTGAAGCAGATAAATAGCCATTATAATCGCACTGCCTTTAGTACAACAGCACAGGAACATGACTCCCGGTTTAACTTTGTGCACACTAACAGATACATTTTCAACAAGAGTTGGTGTCCAAATTCAGTTGCCAAGATCTCTGCTAATACACCTGGCCTTCTGAAGTCATCTTCAGAAGGCCATGCGTATCAATCTATGAAGCCATCAAATCAGAATAAGGACATTTATGCATTCAGTCTGGATGTGCCAGAGCTCAGTGAGaaaaaaaaaagaaggtcttctgaaatgtctgaaatggAAAGCAGTGTCCTCAGCAGTTCCCTGATTCTTGCCAGCACCTCTAAGAAGTGTCCTCCTACGAAGCCTGCTGGTCGTAATGAGAAGAAGCATCTGTTCAGTGACACTGATACTGACAATATGACGGAAATTAGCTGGCTAAAATCAGCCAACAGGAAACCTAAACCTAAAGTGGCAGACTACACAAGACAGCCAGTTAAGCCCACTCATCCTCCTGTGAACATCACATTTGAAACTCCAGACAAACCCATTCCCTCACCAAAGGCTGCAAAAGCATTGCCTAAACCAAAGAGGAAAAGGCAGAAGAAGGTGGTAGAAGAAAAGCATGAGAAAAGCAAGGATGTTGCCAGCAGAAAGCCTAAGAACCTCAGGCCCCAAAGAACCTCAGTTCTGACCAAATCCTACAGAGAGTTGTCTGAGAGTGAGTCAGAAACTGATGGACCACCTCCAGCAAAGAAGTTGATCATCAAACAGCCAGAAAAGCCTCAGAGGACAGCTTCAATTCAGAATAGGGCTGCTATAGTTGAACcacctgtcaaaaaaaaaaccatcaactCAGGTCAAAGACAGTCCATAAGGGTGTGAAggagaaacaggaaaaagaatTATCTAATCATGTAAAATCAAAGCAAAAGAAGACGATTGCAGCTGTTCTGGGGGCTACCAAAGGACAGGAAAATGTTTTGGCCCCTAAAATCGCTTCTTTCTGTGCTTCTCCTTTCCCCTCTAACATAATTAAATCGGCAGAGAAGAGCACAGCCACGCTGAGATCTGCTCTTGCACCAGTGGATCCTATGTCTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301364 lncRNA downstream 428811 13700009 ~ 13700405 (-) True G254567
TU301398 lncRNA downstream 432596 13692797 ~ 13696620 (-) True G254600
TU301397 lncRNA downstream 463743 13664893 ~ 13665473 (-) True G254599
TU301384 lncRNA downstream 514553 13614428 ~ 13614663 (-) True G254587
TU301365 lncRNA downstream 538246 13590500 ~ 13590970 (-) True G254568
TU301888 lncRNA upstream 380244 14530825 ~ 14532588 (-) True G255020
TU301946 lncRNA upstream 549643 14700224 ~ 14704270 (-) False G255071
TU301947 lncRNA upstream 549643 14700224 ~ 14704270 (-) True G255071
TU302215 lncRNA upstream 725063 14875644 ~ 14878506 (-) True G255306
TU302322 lncRNA upstream 1029805 15180386 ~ 15180640 (-) True G255403
XM_026920383.2 mRNA downstream 43162 14072159 ~ 14086054 (-) True pigt
XM_026921076.2 mRNA downstream 68769 14055402 ~ 14060447 (-) True haus8
XM_026921077.2 mRNA downstream 68770 14055402 ~ 14060446 (-) False haus8
XM_026921080.2 mRNA downstream 75044 14050444 ~ 14054172 (-) False sac3d1
XM_026921081.2 mRNA downstream 75443 14050444 ~ 14053773 (-) True sac3d1
XM_026921006.2 mRNA upstream 846 14151427 ~ 14153632 (-) True ppp1r3da
XM_026921005.2 mRNA upstream 846 14151427 ~ 14153422 (-) False ppp1r3da
XM_026921096.2 mRNA upstream 11945 14162526 ~ 14170918 (-) False ttll9
XM_026921095.2 mRNA upstream 11951 14162532 ~ 14172104 (-) True ttll9
XM_034312019.1 mRNA upstream 26645 14177226 ~ 14197008 (-) True edn3b
TU300417 other downstream 1969856 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 1988043 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 2236214 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 2236796 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 2560686 11556887 ~ 11568530 (-) False avpr2ab
TU301948 other upstream 548691 14699272 ~ 14704270 (-) False G255071
XR_003403204.1 other upstream 1337176 15487757 ~ 15487859 (-) True LOC113530990
TU302676 other upstream 1564454 15715035 ~ 15820154 (-) False znf512b
XR_003403156.2 other upstream 2497242 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 2662803 16813384 ~ 16831259 (-) False si:ch211-210c8.6

Expression Profile