RNA id: XM_034311701.1


Basic Information

Item Value
RNA id XM_034311701.1
length 5582
RNA type mRNA
GC content 0.55
exon number 20
gene id LOC113530931
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24166720 ~ 24188371 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGGTGCTTTTGGTTAGTGTACTCTATCAGAAGCCCCTTATTTCAGTGATGAATAATGTTCTAGTGAACGAGGCGCCATTACGATCAAGCCGGAAATAACCGCCATTTATAGATTAGCAGGTGACTTCCGGTGGCAGAGGACACGCCCACTGAGCGAGATATCGCGGTGGTGATATAGAGCTAGCAAGGAGCCATTACTAGCCGCGGAAATAAGCGTTTATTGGCGTGTTTTTGTTTCAACACGGCGAGCAGTCTGACATGAAAATGCAGTTTATCGGCTTCATCTGAACTCCAGCGACATTTTAACACCGACACCGCGATAAGGGATAAATAAAAAGAGGATGAAAGGCGGACCGGAGAAAGCGATGTTTTTCCAAAGTTTTCCCCACAccgaggaggaggaagaggaggaagaggaggacgcgctgaaagaggaagaggaagagaaaagcgTCTCCGGAGATCCGTTTGTCGTGGTGAAGCTGGAAGATGAGAGAGACGGCCAGGAAGCGGACAGGAGCGAGCGGTCACCAGGCTGCGGGTCAGCGCTGGAGATCAGCCTGTTCGCCCCGCTCGAGTCCTCGGAGGacggagaggaagagagaccgcggccgctcacacacacacacacacacacacacacacacactcacacacacactcccggCCTGCTGGCCCTCTGCTCCCGGTCAGGATGAAGACACCGGTTCTCCTCAGAGACGCCTGAGAGGACGCAGGAAGCGGACGAAGCACACTCGCCCGAGACGGCCGAGAGATCCTGCAGCTGTGTCCGGGATGAAAACGATGGAGGAAACCGACGACACGGACGAGCCTCCTGACCACGCCCCTCCGGAGAAATGCGCCAAATCCACACTCTGGGACTTCCCCTCTCACAAGACGGCTCGTTCCGGAGTCTGGGAATACTTTGAGTATTTTATAAACCCAGAAGGCGAGCTGGAGGATTACGGCTTCCCGACGTGTAAACTGTGCCAGCTGAAAGTGGCGTGTAAGAGAGGAAACACGTCCAACATGCTGCGGCACCTGCAGGAAAACCACGCCTTCGCCTACCGAGAAGCCAAGAGAGCAGACGCCCTGTGGCTCGACTTGGACTCCTCTGATTCGGACATGAAGGTGGAGATGGATGAGCAGAACCTGACGGCCGACTGGTGCAGTGTGGGGAAACGGAGCGAAGACGAAAACGAGGGCGATGACGACGGCGATGCAGATTACATCGACCGCAGGATCGCGGCCACTCCGAGGAGGAAGAGGCAGGTCCGCTCGGCCGTGTGGCAGTACTTCCATTACGACGAGGACAGAAGACCGAGCTGTAAGATCTGCGGCTGGAAACTCACTGCAGGATCTTCAGGCAGCACGAGCAACATGAGGCATCATCTCCAGAGCCAGCATCAGATCGTGTGTCCGCTCAGTAAGtCTGCAGGTCTTGTTATAACGTTGCCTGAAGGAGACGAGCCGATTAAACTGTACCCGCCCACAACACCTCGCAAATCCGCCGTGTGGAAGCTGTTCGGCTTCGTCATGAACAGCGAGGGCGTGCTGGAAGAGAACGGCTTCCCCATCTGCAGGCTGTGCCATCAAGTTGTCGCATCCAAAGACGGAAACACGTCCAACATGTACAGCCACCTGCAGCACCATCACCAAGCCGTGTACGCAGAGCTGAAGCACGCGATGGCTCCTGCAGGAGCGGAGCAGAGACTGGACCTCTCAGACACCACAGAGCTCCATCCTCCTGTAAAACGCAGAAACTCGCCTGTTTGGAAATATTTCggatttattaaaaacaccGAGGGTGATTTAAAGGAGGACGGATTCCCGCTGTGCAAAATGTGCCATCGGAGAGTGGCGGCTAAAGACGGAACCACGTCGAACATGCTGAACCACCTGCGGCGCCACCACCAGGCCGAGTATGAAGAAGTGAAGctGGCGAACGAAACGTTGCTTCCGAGTCGTCCAGAGGAAGGGAACGATCTGCCTGAGCTGTTTCCTCCCAGCATCCTTCCCCTGTCCCCCGTCTGGGATTACTTCGGCTACCCGAAAAACGCAGACGGCGTGATCGAAGAGAACGAGCGGCCCAAGTGTAAAGCCTGCCGGCAGTCCATCGTCTCCAAGCAGGGCATTTTATCCAACATGCTACGCCACCTGAAGTTCTACCACGACTCCTTATTCGAGGAGCTGAAATCGAGAACCGGATGGCGCAGGTACAGACCTTATAAGGAGAGAAGCCGAGCCCCGCCCATTCAGGCCAACCCGGACGAGCTGTACCCGCCCAAAATGGCCCTGAAATCAGGTGTCTGGAAACATTTTGGATATCTGAGGAACTCTAAGGGCGTGGTCGTTCCCGACGGGTTCCCGATCTGTAAACTGTGCCTGAGAAAGGTCAGCACGCCGAGAGGATGTACCACCAACATGATGGTGCATCTCCAGAGATACCACACCACCGAGTTCGCAGAGATGAGGCTGAGCGGTGACGATAATGATGACCAAACTCCGAGACAGACCGGAGACCCGGGCCCGCCGTTGGACCTCTGCCCACCACGAGATGTCCTCGAGCCCGTGTGGGAGCATTTCGGATACCAGAAGGACGCAGACGGAGTCGTCCAGGTGGACGGACAGCCGACATGTAAAATCTGCCGAGTGAAAGTTTCCTGTCCTGGGGAGAGCACCAAATTTCTGTACAGGCATCTGTGGAAGAAACACAACGCCGTCTACTTCGACATCAAGGTGGCCACCAGTTCCTTGAGAGGAGAGGACGGACTGGTGGCCCCGGTCCTTTTCCCACCGACGCACAGGGTGAAGTCTGCCGTCTGGGAATATTTCGGCTACTTGAAGGACGCGGAGGGGACGGTGGTCTGCGACGGCTTTCCTATCTGCAAAATCTGCTACTTAAACGTAGCGGCTAAAGGAGGAAACACCACCAACATGTTCAAACACCTCAAAGATCATCATAAGTCCATCTACGATGAGATCAGGCCGGCTGTTCCCGAGGAAATCGTTCCAGATCATGCGTCTTCAATTCTCTATGCTCCAGATGGCCAAAACTCCAAATTATGGGAATATTTCGGATACCTCAAAACTCCGGACGGTGCCCTGATAGAAGACGGAGCTCCGGCTTGTAAGATTTGTGGCCTGAAGGTGACGTCGGAGGGCGAGTCTACGTCCAACATGATGAAGCACCTTCAGGAGAATCATGAAGGAGTGTACGCTGAAGTACAGGAAGCGCTCAGTAACCCGAGGACGGAAGACGCACCTGAGCTTCCAGAGCTTCCCGAGCTTCATCCACCCACACAGAACGCGTATCCCGTTTGGGAATATTTCGGATTCCTGAAGGACGCAGAGGGATCGGTCGTGTTCGACGGCTTCCCCATCTGCAAGATATGTCGCCAGAGAGTGGAGTCCAAAGACGGAGACACGAGAAACATGTTCCACCACCTGAAGGCGAATCACCGGAACGTGTACCAGCAGATCAAGCCGGCGGTTGAAAAAAGGGTTTATAAGCCCTTTGAGCTGTGTCCACCGAACGGCCGGCAGATCGACATCAGGTTATGGGATCACTTCGGATATCCGAAAAACGCAGAAGGCGAGGTTGAAGAAGACGGAGCTCCGGTGTGTAAGATCTGCCTTCAGAAGCTCACGGCGTCCTCCAGAGGAACGAACCTCACCACCAGCATGCTGAGGCACCTCCGGAGGAACCACCAGTCCGTGTACGAGGAGGTTCAGGAGGCGATCGGAGCCTGGAGACCCGAGTGGAACAGCGAAACCCTCGAGCTTTACCCACCCACGCAAAACGTCACGTCCTCCGTCTGGGAGCATTTCGGATACCTGAAAGACGCCGAGGGGACGGTGGTGTGCGACGGCTTCCCCATCTGCAAAATATGCCACCAGAAAGTGCCTTCTAAAGGAGGAAACACCACCAACATGTTCAAACACCTCAAAGACTGTCATCGGAGCATCTACAGCGAAATCCGAtCCGCAGTGACTAACGAGGTGTTTGAGGACGTTCGCTCGGCCACTGACCTTCACCCGCCCAGCACCCCGTGTGACCCGACGCTCTGGGAGCATTTCGGATACCGCAAAACCGCAGACGGAGTCGTGGAAGAGGACGGAGCGCCGTTCTGTAAACTCTGCCTTCGGAAATTAGTGTCCAGGGGAGAGACTACGAGAAACATGAAGCAGCACCTTAAAGAGAACCACAACACTGTGTACACCGAGCCCGAGGAAGTCCTGAGCTCGTTCGTCTTGGAGCTGGACACGGGCACTTCGGACCTTCATCCTCCGACGCGGAAGGTGAAATCAGCCGTGTGGAAGTTTTTCGGTTACCCGAGAGACGCGGCGGGGTTGGTTCTGAGTGACGGCTTCCCCATCTGCAAACTCTGCCAAAAGAAAGTCTCTGCTAAAGGAGGAAACACCACCAACATgttcacacacctcagagattATCACCGGACAACGTATAACGAGATCAAGGCAACGTTTGATCCTGTAAGGACTGAGAACGAGCTGGAAGCCGTGGAGCTTCATCTCCCGACGACGGACGCCCTGTCACCGGTCTGGAAATATTTTGGATACCCGAAAAACGCAGACGGGTCTGTGGTGTGTGACGGCTACCCGCTGTGCAGGCTGTGTCAGCTGAAAGTGACGGCTAAAGGAGGCAGCACGACAAACATGCTCATGCACCTGAGGGCCTACCACCTGGATGTGTACAAGGAAGTCAAGccaGCCGTTACTAAAAAGTCCATCTACAGACCTTTCGATCTCTATCCACCGAGCGGTCAAGACGACATCAAGCTGTGGGATCATTTCGGATATCAGAAAAGCGCAGACGGAGAGCTGAAGGACGACGGAGCCCCGATCTGTAAAATCTGCCTTCGGAAAATGATCAAACCCCCGACGGGCGGGACGCCGACCACCAACATGCTGAGGCACCTTCGCAAAAAACACCAGTCAGTGTATAACGAAGTGCAGGAAGCGATCACCACGCTTAGAACAGCGTGGGGCATCGAACCACCCGAGCTCCACCCACCGACTCAGAACGTCACGTCTGCAGTCTGGCAGTATTTCGGCTACCTGAAAGACGCCGACGGCTCGGTCGTGTGCGACGACTTCCCCATCTGCAAACTGTGTCAACAGAAAGTGGCTTCCAAACGACGATGCACCACGAACATGTTTAAACATCTGAAGGATTACCACAGAACCATCTACGACGAGGTCCGGAGCGCAGTCACGAGCGAGACGTTCGAAGATCTTTTCCTGCCGACCGATCTCCATCCGCCGAGCGGCCAGTACAATCCCAAACTGTGGGAGTATTTCGGATATCGTAAAACGGCAGAGGGGAACCTCGTGGAAGACGGAGCGCCGATCTGTAAACTCTGCTTCCGAAAGCTGATTTCTAAAGGCGAAACGACCTCGAATATGATGCAGCACCTTAAAGAGAACCACAACACTGTCTACACCGACGTCCAATAGAGGGAAGTAAACCCGTTCACCATCGGAGGAGCCACTGAACTCCCCGAGCTTTACCCACCTGAACACAGAGTGAGGTCTGGCGTCTGGAAATATTTTGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308296 lncRNA upstream 5080 24158866 ~ 24161640 (+) False G260409
TU308297 lncRNA upstream 5080 24158866 ~ 24161640 (+) True G260409
TU308326 lncRNA upstream 20381 24145990 ~ 24146339 (+) True G260434
TU308323 lncRNA upstream 26101 24135794 ~ 24140619 (+) True G260431
TU308322 lncRNA upstream 34762 24131718 ~ 24131958 (+) True G260430
XR_003403195.2 lncRNA downstream 164423 24348977 ~ 24351472 (+) True LOC113530917
TU308598 lncRNA downstream 216030 24400584 ~ 24453510 (+) False rnf146
TU308545 lncRNA downstream 220490 24405044 ~ 24430691 (+) True G260592
TU308624 lncRNA downstream 293012 24477566 ~ 24479800 (+) True G260632
XR_004579724.1 lncRNA downstream 338704 24523258 ~ 24528915 (+) True LOC117599259
XM_026920901.2 mRNA upstream 35613 24091122 ~ 24131107 (+) True slc1a7b
XM_026920900.2 mRNA upstream 35613 24091122 ~ 24131107 (+) False slc1a7b
XM_026920938.2 mRNA upstream 111196 24048016 ~ 24055524 (+) True gpx7
XM_034311922.1 mRNA upstream 198834 23951660 ~ 23967886 (+) False mcoln3b
XM_026921140.2 mRNA upstream 198834 23951661 ~ 23967886 (+) True mcoln3b
XM_026921040.2 mRNA downstream 115042 24299596 ~ 24306661 (+) True cltrn
XM_034311816.1 mRNA downstream 115044 24299598 ~ 24306655 (+) False cltrn
XM_026921041.2 mRNA downstream 127672 24312226 ~ 24315467 (+) True mdp1
XM_026921357.2 mRNA downstream 264048 24448602 ~ 24453538 (+) True rnf146
XM_034311962.1 mRNA downstream 265396 24449950 ~ 24453538 (+) False rnf146
TU308306 other upstream 133996 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 777406 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 783067 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other upstream 783067 23371747 ~ 23383653 (+) False LOC117599309
XR_004579671.1 other upstream 1487170 22671625 ~ 22679550 (+) False LOC113530514
TU308384 other downstream 84023 24268577 ~ 24269267 (+) True G260483
XR_004579660.1 other downstream 440383 24624937 ~ 24634545 (+) False ddx58

Expression Profile