RNA id: XM_034311711.1


Basic Information

Item Value
RNA id XM_034311711.1
length 2428
RNA type mRNA
GC content 0.55
exon number 8
gene id si:ch211-218g4.2
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13733088 ~ 13813355 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGTGTGACACTTTTGGGCACGGCTTCTGTGCCACAGGAGAATTTAGGGATTTCCATCTATGAATATCATTTAACAACTACCTGCTGAGACCAGAGCCAAACCCGAGATGGCAGCCTGCTCCAGGCTCCAAGGCAGCCATGTTGGTGAAAGTGAACGGCAGTGGCAGGAACCAGCACATCACCCCTGCTAGCCCCCGCCCCCTTCTTCATTTGAGCCTGTCCACCAACAACACCCCCTCTCCTAACCCCACATACCCCAACAGGACTGCCTCCTTTGGCAAGATGGACCCCAAACAGTCCTTTCATCTCCTCAAGAAGGCCGACAGTGGCAACTTCAGCATGGTGATGCCCAGCTCTGGTGCCCCCTCATCTACAAATGTTCTCCGTCCTTCTTCTCCTCAGTACGCAGCCACGCCCCCTGTGCCAATCTACGATGAGCCTCCAGCTTCAGATCCACCCATTTATGATGAACCACCAGCTGACATGGAAGTGGAAGGGGCAGACTACTTGACCCATGACGCCTATAGACCTACGCACAGCATGCCGCGATTGACTCCACCCCCTAAACTTCTCCAGTTCCCCCAGGCCAAGCACAAGCGCCATCCCTCGGCTGGGGAGTACAGCGCGGCTGGGCGCGAATGCATCAAGCACATGGTGAATGTGGACCTCCAGCCAGGAGAGAGCCCAAAAGAGGAGCTTTCCATGGAGAAGAAGCAGCCGTGGCACAGCCGTCAGAGCAgcctggcatctcaggagtatcCACCACCCTCCACCGTCACCTACCAGGACTCAGGCTACTCGACGGGGCCCTCGCCGAGTCTGCGCAGGAAGAACCGCAGAAGGGCAGTGCCAGGGCATGGAAGTGGCAGCGAGCTCAATGACAAGCTGATGGCCGAGATGAAGGTGGCTTTAATGAGCTCAGAAGGTTCACTGAAGAGCAAGACACTGCCTGGTCCAGTTTCAGGCTCAGGGGAGGATGTGATGGGCAGCGAGCGTTCACTGTACAGCAGACACGGAGATGCAGCGCTGACATCAACCGAGGGGTTAGCAGGGGGGCAGAAGAGGACATACGAGAAGGTGGACTCATTGGAGAAGAGTGAAGCATCTCACACAAGCCTGTCCTCTCCGGAGCCCCCCGCATCACCCTCACAGGCAGGAACACTGGAATCCAAAAGCCAGCCTGATTTCCGCTCCCAACACGGAAAAGACCATGATGATCACGTAACAGTTCACGGCACCACTTCTGTCTCCTCACTGCCCGCCCTCCAGGTGCATACCCCCGCCCCTGGTCCCACCTACCAGTACCCCTACTCTACCCTATGCAAACCTCCCATTGATGTGGATATGGAAGCATGGGCTACCAAGAACCTGAACCAGCACACACGAGGCCTGCTGCGCCGACGCGTCTCCATCGCCACCATGCTGTCATGGAGCAGTGCTTCCATCAGGAAGCCTATGCTGATCACGAGCGACCGCGCCATCAAAAAAGAAGCATGTGACATGTTCAAGCTGGTCCAAACATACATGGGTGATCGGCAAGTGACACGCCTTGACCGGCGCCATGTTGCCCTTCACGTAGTGACCAAGTGTTGGAGCATGCAGGGCCTGAGGGACGAGCTGTATGTCCAGCTGATCCGGCAGACCACGGACAACCTGAACCTCAGCAGCCTCTGTGCAGGCTGGGAGCTCATGGCTATCAGCCTGGCCTTCTTCTCTCCATCCCCCAAGTTCAGACGCTATCTTGAGGGTTACATTCAGAGACACCTGGAGCCCAGTAATGACAAGAAGAtaTTACAGAGGATTGTGGAACAACAGGACataaagaacaagaagaacTCGAAGTCCAGGAAGAAGAGGAAACAGAAcaatgaagaagaggaagaacagGGTACACGTCTGCCAATCAGCACTTACGCCAAATACTGCTACCGCAAGCTGCAGAAAGTTGCTGTGACTGGGGGTAAAAAGGGTCTGAGGAAACCTACCCTGGATGAGATTGATCACGGGAGGAACGCCATAGTGACGCCCTCGCTGTTCGGAAGCGCTCTGGAGGAGATCATGGAGCGGCAGAGCCAGCTGTTTCCTCACAGGAGGCTGCCCTGGGTGCAGGTGCAGCTTTCTCAGTGTGTTCTGGCACTCGGTGGAGCCCAGACCGAGGGATTTTCAGAGTCCCAGGAGACATAGATGAAGTGAATGCCCTCAAATTACAGGTGGACCAgtggaaaattccagaaaacCTCTCTGACCCTAACGTACCTGcgtcACTGTTAAAGCTGTGGTACAGGGAGTTGGAGGAGCCTGTGATTCCACAGAGTTTCTATATGCAGTGTATCAGTCACTATGAGGATGCTGAGGCAGCCATCAGCGTAGTGCAGGCTTTACCAGAGCTTAACAGACTGGTACTGTGTTACTTCATCCATTTcttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301364 lncRNA downstream 32683 13700009 ~ 13700405 (-) True G254567
TU301398 lncRNA downstream 36468 13692797 ~ 13696620 (-) True G254600
TU301397 lncRNA downstream 67615 13664893 ~ 13665473 (-) True G254599
TU301384 lncRNA downstream 118425 13614428 ~ 13614663 (-) True G254587
TU301365 lncRNA downstream 142118 13590500 ~ 13590970 (-) True G254568
TU301888 lncRNA upstream 765215 14530825 ~ 14532588 (-) True G255020
TU301946 lncRNA upstream 934614 14700224 ~ 14704270 (-) False G255071
TU301947 lncRNA upstream 934614 14700224 ~ 14704270 (-) True G255071
TU302215 lncRNA upstream 1110034 14875644 ~ 14878506 (-) True G255306
TU302322 lncRNA upstream 1414776 15180386 ~ 15180640 (-) True G255403
XM_026921355.2 mRNA downstream 11358 13700436 ~ 13721730 (-) False phf20b
XM_026921354.2 mRNA downstream 11358 13700436 ~ 13721730 (-) False phf20b
XM_026921353.2 mRNA downstream 11358 13700436 ~ 13721730 (-) False phf20b
XM_026921352.2 mRNA downstream 11358 13700436 ~ 13721730 (-) True phf20b
XM_034311623.1 mRNA downstream 14541 13700436 ~ 13718547 (-) False phf20b
XM_026920634.2 mRNA upstream 49228 13814838 ~ 13947569 (-) False sulf2b
XM_026920633.2 mRNA upstream 49228 13814838 ~ 13947569 (-) True sulf2b
XM_034311843.1 mRNA upstream 49228 13814838 ~ 13894962 (-) False sulf2b
XM_026920632.2 mRNA upstream 49228 13814838 ~ 13868363 (-) False sulf2b
XM_026920635.2 mRNA upstream 49228 13814838 ~ 13868363 (-) False sulf2b
TU300417 other downstream 1573728 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 1591915 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 1840086 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 1840668 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 2164558 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 363606 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 363606 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 363606 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 363606 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 933662 14699272 ~ 14704270 (-) False G255071

Expression Profile