RNA id: XM_034311749.1


Basic Information

Item Value
RNA id XM_034311749.1
length 2710
RNA type mRNA
GC content 0.55
exon number 25
gene id itchb
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23331249 ~ 23359264 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTATTTCCGGTCACGTGAGACCGACCGGGAACAGGAACATGGCGGAAGTTTATCTCTCGAAGTAAGCCCgagaattaaaaaacaaaacaaaaaaaaaaacaaggaggcGTCTGGGCTTCAAATTTGATCTGCAACCCTATTAAGGTCTCAGACCCGGCGTTGTTCCATGGCCTCCACCGTTCCCAAACCAGGCCCTGGCAATGGCCACCCCATGAAGGCTCCGCTACGGATCACTGTGACATCAGCCAAGCTGAAGGAGAGCAAGAAGAACTGGTTCGGGAAAAGTCTGTACGTGGAGGTGATAGTAGACGGCCAGTCCAAGAAGACGGAGAAGTGCAGCAACACAAACAGCCCCAAGTGGACGCATCCTCtcaatgtGCTCGTGTCACCCTTCAGCAAGCTGAATTTCCGTGTATGGAGCCAGAAGACGCTGAAGTCTGACGTGCTCTTGGGCACGGCCACGCTCGACATCAGCGAGACGCTCAAGAGCAACGACATGAAGCtgtgtgacGTGATGCAGATGTTGCCGCTGTATGCAAACAAGGAGCAGACGGACGTTGTTGGagatctgtctgtttgtctgaaCTGCATGCAGTTCGACCCGGAAGCGTTCGCTTCTGCTGAGGCTAATAACAAcaCCACGACAGACGGAGAGTCGCAGCAGAACGAGGACGTCGGCACGAGgaggagcagagagggttCTCCGAGTGTGGCGGACGTTCCTAACGGACGTGCCGTCAACGGAACCGGGTCTCCCTCCATCTCGAATCGGGGGTCACGACCCCAGAGGCCGCCCAGACCCTCTCGACCACCGCCGCCCACCCCACGCCGACCGCTGTCTTCTCCGGCATGCCCCTCTAACGGTTCAGTCACAGACAGCAGCAGCTCGACTCAGCCAGAGACACCGGTGCGGATCCCTAACGCCACCCCTGACCCGCCCGTCGCCCGTCGCCCCTCGCCCACCCGGATGCCCATCACCAACACCGGGCCTCTGCCACCAgggtGGGAGCAGCGAGTGGACCAGAGCGGCCGTGTGTACTTTGTGGATCATGTGGAGAAGAGGACGTCGTGGGAGAGACCTGAGCCTCTGCCTCCTGGTTGGGAGCGGCGCCTGGACCCTTTGGGACGTGTGTACTTTGTGGATCACACGAGCCGGACAACAACATGGCAGCGTCCCACTGTGGAGACGGTGCGCAACTACGAACAGTGGCAGCACCAGAGGAGCCAGTTAGAGGGGGCCATGCATCAATTCAACCAGCGCTTCATCTACGGcGTGCAGGATCAGGCTGCAGCTGCTCAGAATACAGAGTATGACCCACTCGGCCCACTGCCACATGGATGggAGAAGAGAACGGACGCTACTGGCCGAGTGTATTTTGTGCACCACCCGACTCGTTCCACGCAGTGGGAGGATCCTCGCACTCAGGGGCTGTTGAATGAGAAGCCGATGCCCGAGGGCTGGGAGATGAGGTTCACCGTGGAGGGGACTCCGTACTTCGTGGATCACAACAGGAGAACCACCACCTACATCGACCCGCGGACGGGAAAATCATCACTTGAAAACGGCCCTCAGATCACCTACGTGCGTGACTTCAAAGCCAAAGTTCAGTACTTCAAATTCCAGTGTCAGCAAATAGCGATTCAGCAGCACATCAAGATCACGGTGAGCCGCAAATCGCTATTCGAAGACTCCTTCCAGCAGATAATGAGCATTAATCCCCCAGACCTTCGCAGAAGACTGTGGATCATCTTCCCTGGGGAGGAAGGCCTCGACTACGGTGGTGTAGCAAGGGAGTGGTTCTTCTTGTTGTCCCACGAGGTTCTCAACCCCATGTACTGCCTGTTTGAATACGCTGGCAAGGATAACTACTGCCTGCAGATCAACCCAGCTTCATCCATCAACCCAGACCACCTCAAATACTTCCGCTTCATCGGACGCTTCATCGCCATGGCTTTGTTCCACGGGAGGTTCATTGATACAGGCTTCTCGCTGCCTTTCTATAAACGTATTCTTAACAAACCTCTGACTCTGAAAGATCTCGAGTCCATCGACCCCGAGTTCTACAACTCGCTCATCTGGATCAAagaCAACAACATCGAGGAGTGTGGTCTGGAGATGTTCTTCTCAGTGGATAAGGAGATCCTCGGGGAGATCACAACTCACGAGCTGAAACCAGATGGAGGCAACATTCTGGTCACAGAGGAGAACAAAGAGGAGTacatcagGCTGGTAGCTGAGTGGAGGTTGTCCCGAGGTGTCGAAGAACAGGCGCAAGCTTTCTTCGAGGGCTTTAACGAGGTCCTGCCTCAGGAATTCCTGCAATATTTTGATGCCAAAGAACTCGAGgtgtTGCTGTGTGGGATGCAGGAAATCGATCTGGCTGACTGGCAGAGAAACACcatctacaaacactacacacgcACCAGCAAGCAGATCGTGTGGTTCTGGCAGTTGGTTAAGGAGATGGACAACGAGAAGCGAATGCGTCTGCTGCAGTTCGTCACCGGTACCTGCCGCCTGCCCGTGGGCGGGTTTAATGATCTCATGGGGAGTAACGGCCCACAGAAGTTCTGCATTGAGAAAACAGGGAAGGAGAACTGGCTGCCCCGGAGTCACACATGGAGAATCTGTCTGATGGATTAAATCCTGCTGAGACGGAATCACACCAGAGAGAGGAACTGAAACATGCTCTCGTCATGCACaaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307833 lncRNA downstream 13830 23316300 ~ 23317419 (-) False e2f1
TU307824 lncRNA downstream 21635 23309015 ~ 23309614 (-) False e2f1
TU307655 lncRNA downstream 149657 23180382 ~ 23181592 (-) True G259897
TU307596 lncRNA downstream 308569 23022414 ~ 23022680 (-) True G259839
TU307595 lncRNA downstream 309679 23021361 ~ 23021570 (-) True G259838
TU307873 lncRNA upstream 109537 23468801 ~ 23469073 (-) True G260055
TU307874 lncRNA upstream 114786 23474050 ~ 23474641 (-) True G260056
TU307890 lncRNA upstream 162951 23522215 ~ 23522708 (-) True G260071
XR_004579700.1 lncRNA upstream 509243 23868507 ~ 23872875 (-) True LOC117599235
TU308245 lncRNA upstream 515255 23874519 ~ 23875316 (-) True G260369
XM_034311580.1 mRNA downstream 13785 23308899 ~ 23317464 (-) True e2f1
XM_026920910.2 mRNA downstream 51739 23244729 ~ 23279510 (-) True ctnnbl1
XM_034311678.1 mRNA downstream 90902 23192257 ~ 23240347 (-) False LOC113530288
XM_026920135.2 mRNA downstream 90903 23198582 ~ 23240346 (-) True LOC113530288
XM_026921349.2 mRNA downstream 144943 23181609 ~ 23186306 (-) True rprd1b
XM_034311687.1 mRNA upstream 34408 23393672 ~ 23395815 (-) True LOC113530415
XM_034311899.1 mRNA upstream 164149 23523413 ~ 23527413 (-) True LOC113530552
XM_026920812.2 mRNA upstream 188161 23547425 ~ 23556299 (-) False abce1
XM_034311948.1 mRNA upstream 188161 23547425 ~ 23556286 (-) True abce1
XM_026920106.2 mRNA upstream 197696 23556960 ~ 23562364 (-) True LOC113530272
XR_004579695.1 other downstream 90903 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 881822 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 1376644 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 1976552 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 2161551 21168986 ~ 21169698 (-) True G258580
TU308180 other upstream 404410 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 1142469 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 1146364 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 1428426 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309105 other upstream 1521694 24880958 ~ 24883145 (-) True G260947

Expression Profile