RNA id: XM_034311834.1


Basic Information

Item Value
RNA id XM_034311834.1
length 7353
RNA type mRNA
GC content 0.48
exon number 18
gene id LOC113530539
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24537485 ~ 24584563 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCAGGGAAAAGCAAAACACCGTGAAGGGTCTGAGGTTTATGTGACGTTATCGGTCACGTGACACCGGTGCACCCTCACCTGAAATGCGGACAGTTTGCACGTGAGCTGATATCGTGCTCGTGCAGCAAAGCTCAAAACAGAGAAAGCGACTCGGTGCGCGCGTGAAGACAGCGTTTGAAGCGAGAGACAACCGGAAAGTCAAACcggaaacacaaacaaataaacaaataaacaaacatcgCGAGGCACCTGgaagaAGAGTTCCTGTTCTCCCCTGATGTCTTACCCCCACTGCCAGAGGTCCCCGTTCTCGAAGGGGCGGTGCTAAGCCGAGGGGCCTTCCGAAACCCCGCCCTCAGTCACTGCTCCTCCCACAGCATGGATTCCGCCCAGTGCAACGACCGGCCTGTCAGCtacacctccacctcctcctccacctcctcgtCACGGGACAGCCACTGCTCAGCCGTGTTAGGCTCCGCCCCTGAGCGGGACCGAGATTCTGGGGCGATCCGACTGGAGCTCGTCCCCGCCCGTCAGCTGGAGGAGGCGGAGCCACCTGCGCCGACCAGTCAGGATGAGGAGCGTAAAGTGGCCTACGTGGATCATGTGGTGCAGGAGATTCTGGAGACGGAGAGGACATACGTCCAGGACCTGCAGAGCATCGTTCAGgattaTTTGGAGTGTATCAGTAATCAGGCTCGTCCCATGTTGGGGTTGGAGGACAGGAATTCACTGTTTGGAAACATCCGGGAAATTTACTGTTTTAatagggatcTCCTGCATGATTTGGAAAAGTGCAATGCAGACCCGGTGGCCATCGCTCAGTGTTTTGTAGCGAAGaGTGAAgaatttcatatttatacacaGTACTGCACTAATTATCCAAGgtctgTAGCCGTCCTCAGCGACTGTATGAGGAATAAAGCGGTGGCGAAGTTTCTGCGCGAGCGTCAGGAGTGTGCGAAACACTCGCTGCCTCTCGGCTCGTTCCTGCTCAAACCTGTACAGAGGATCCTCAAGTACCACCTGCTGCtgcatgagatcGCCACGCACCTGGAGAAGGACTCGGAGAGACATGCCGTGGTTCAGGAGGCGATCGACACCATGCAGAGAGTCGCCTGGCACATCAACGACATGAAGAGGAAGCACGAGAACACCGTCCgactgcaggaGATCCAGAGTTTGTTGACGAACTGGCAGGGTCCTGATCTGATCGGTTACGGTGAGCTGGTTTTGGAGGGAACGTTCCGGGTCCAGAGAGTGAAGAACGAGAGAACGTTCTTCCTCTTTGACAAACTCCTCCTCATCACCAAGAAACGAGAAGAGACCTACGCCTACAAGGCACACATactgTGCTGTAATCTGATGCTGGTCGAGGTCATTCCTAAGGAGCCGCTGAGCTTCAGTGTGTTCCACTATAAAAACCCCAAACTGCAGCACACagtgcagGCCAAGTCCCAGCAGGACAAGCGAACGTGGATCCAGCACCTGAAGAGGCTCATTCTCGAGAACCATCCGGCAAAAATCCCAGCCAAGGCCAAGCAGGCCATTCTGGACATGGATGTGCACCAGTGTAGCCCTGAGGGCCAGAACAGAATCAACCTTAAAGAAGGTCCTTCCCCCAGAAGAGCACGCAGGAAGACAGAACCCTTGTCCAAACTGCtcaaaaataaacatgcaatatcCAGTCCAGATATTCAGAAGAGAAGCAGTTTTGGCGCAACCCTTCTGTCTCCTGTAGTCCACTTGGGCACCATTGGTCGATCCCGCAGTCTTGTTAGCCAATCACAGGAGTCACTGGACCCTGGTGACCATGGCGACCACAGTGACATAGATGAGGGGTTACATCCACAGgatgctgatgatgaagatgacagTGGATTGAGCTCTGGAGGTAAGCTACGTGTACCTGGAAAGAATAGCAGGAAAAGGCTGAACGCCCAGGTGTCGGTGGACAGCATCGACCATTGGAAGAACCACAGCCTTGACCATATTGATCTACAGACGGCCAAAGAGTCTCTGCAGAAAGAGACAGTGCACACACCCATTTTACGGGTGACCTGTCCTCCTGAAACACGGGCTGATGATCACTTTTCCCAGTTGCTGGGCACAAGCAGTGGACGTTCTGTTCCAAACATATGGGCAGACCACAGAGTGCGTCGAGCCATGTTCCCTACTCGTCAAAAGACTGTCCAAATCGATGACGATGAAGACATTTATCAGATGTTTGTGCCCACTGAGAACGATACAAGTGGGCACGATGCAGAAAGCGATCATGACACAATTGACGATCGTCCTGGACGACCGTGCAGCTGGCATGTGGAACAGACACAGTCGGTGCAGTTAGACCTCCCGGCCAACAGGGGTAAAGTGTTACGCAGGGCAAGTAGTGTTGGAGAGCAACAAAGTGAGCGACAAAGTCCTACAAAGAGAGCTGTCCTGAAAGAGGAAGTACACGATAATACAGAGTCATCGAGTAACGAGATATCCGGATCTTCCTCAGCGGAACAGCTAACGATTGACGATATTGAGAATGTTTACGATAATATTAGCTATGAAGAACTGCAGGCCATGGGACTGATTCGGAAGGATCCGGAGGTTAACCCGTCCTCTTCAGAGATGAAACCAGTTGTACCTCCACAAATCTTAGTTTCTCCAGTTGAAATGGAGAGCTCATCTGAAAGCAACAGGTCCTCAGGCCAGGAGGGGGCACCATTTGAATCTTCCTATGTGCAGACaccagaggaagaggaaaatgtCTATGATACCATTGTGTTCCGTGAATTGCCACCTCCTGTCACTGAGGCAGGAAGAGGAACTGAACAAGCAGCCAAACAGGATAATGCGCAATCACCCAAGACGGACGTGACAGTTATCCAGAACATAGGAACCGTTGTTTTTGATGAAAGACCAAATCTGGATTACAGCAAAGTAGCAAATCGACCCCTTCCTGAGATTCCCACTGTTTCAGTTACAGATATGGACATACCATTAACTTTGGATAAACCTTCCAAGCAGTCTGTAGCTGATCACATGTCAGAGCAAGTTGACGAGATATGGAATGATCTGGAAAACTACATCCGGAATAATGAGAAGAAAGCAGACAAGCTTCCTGCTGCATTTCCTGTCAATAGACCAGAATCACCACGTAAGATGTGTGATTCTCAAGGTAAAATTGAAAGTTCTTCAGACAAATTACACAGCTCTCCAACAAAGGCTGTCAAATCTCAGCCAAAATCACAAGACTCCCAAGACAAGACACGAAAATCGCATCAATCTCCCAGCAAAAAATGTAATTCTGGACGCAAAACTAGTGACTCTCATGTCAAAACAGATGGTGCTAAGAAGGTGAAGAAAAGCGCATCGTCACCCTGTTCTCCAGCCTTCCACCCTATTCCAACTTTCAAATTCCCAGTGCTCAGCGTTCCCAAACTTGTGCGAGAGCCTACGTTTGAGATAGATGAGCCTGAATCCCCTCCATCTACACCTCCTTCTACACCTTCTATTCCCCAGGTCCCCACCACTGCTCCCCAGGTCCCCACCACTGCTGCCCAGGTCCCCACCACTGCTCCCCAGGTCCCCACCACTGCTCCCCAGGTCCCCACTACTGCTCCCCAGGTCCCTGCTGCCCAGGTCCCCACCACTGCTGCCCAGGTCTCCACCACTGCTGCCCAGGTCCCCACCACTGCTGCCCAGGTCCCCACCACTGCTCCCCAGGTCCCCACTACTGCTCCCCAGGTCCCCACCACTGCTCCCCAGGTCCCCACCCCTGCTCCCCAGGTCTCCACCCCTGCTCCCCAGGTCTCCACCCCTGCTCCCCAGGTCTCCACCACTGCTCCCCAAGTCTCCAACCCTGCTTCCCAAGTCTCCACCTCAGTTCCACAAGTCCAAGTCTCCAGCCCTGTCAGCCAGGTCTCAAGCCCTTTCCCCCAAGTCTCGAGCCCTGTTCCACAAGTCCAAGTCTCAAGCCCTTTCCCCCAGGTCTCAAGCCCTGTCAGCCAAGTCTCAAGCCCTATTCCCCAAGTCCAAGTCTCCAGCAATGTCAGTCAAGTCTCAAGCCCTTCCCCCCAAGTCTCAAGCCCTTCCCCCCAAGTCTCAAGCCCTATACCCCAAGTCCAATTCTCCAGTCCTATTCCCGAAATCCAAGTCTCCAGCCCTGAACCCCCACCCGGCACAGTCAAGAGCATCCGGAACAAACTAGCCAGGCTTAGCAGTGGAAGCTTCCGCATGGATGATGAGGACCCTCCTACACAGAAAGACCCCGAGCTACAAGCACTATTTAGTGGTCTGGACCCTTCATTACTTCCTTTGGCATCCTCTGGTCTTCTCCTGGGTGCAGATGCTGGAGACCAGCTGCTGGATCTAGGGGAGAAAGGTAGAAACAGAGTTTTCCTCATGGCCAGACAGTACAGCCAGAAGATCAAAAAGGCTAATCAGCTGTTGAAGATGAAGAGCATGGACCACGAGCCCAGCTGCGCAAGACTCAGGACCAACAAGGCGAAAGATTTAGCCGCCATTCTGGAAGAGAAGAAGCAAGGTGGAGCAGCTATAGGAGCAAGGATAGCTGAGTATTCCCAGTTATATGAGCATGTGATGTTTAAGGAGCCTCCTACTACTCCTCCAGTGCTGAAATCTTCAGTCAGCGTGTCAGGACCTCACCCATTTTCCTCACGCTCAGGCTTGGCTTCCTCCCCATCCCTGCCTGAGAGTGCCTTCCCAGAGACTGACTGGTTGAACTGCACCTACAGCAATGGCGAACTTGCTGGCTTTGTGTCCTGGCCTGATGAAGTCGGAGGGCGCTCTTCGACCCCTCAGAGAAAGTTGTCCCCTGCAATGTCCATCCCTGCCTTTAAGAACCTTCCGCCACCTCCAAGCACTCCGTCCAATCAGCGCTGGAGTGCCTGTGTGACTCCGGCCAGCAAAGACGACTCTGAACACATTTACAGCACACTGGGGCAGCGTAGTTTTAAAACTCCACCCTATACCCGCTGTCAGTCCTCATCCTCGTTGGCTGAgcagcaagagaaagagaacggCGGGAGTATGGGTAATCTGGGACACACCAGTCATCCAGAGGGGGCTGCGATTGCAGGACGTGGCCTCGGACCTCGGCAGCACAGCCTTCCTGAGTGTCCTGCCCAAACGACCTCGGACCTTTCCCAGTCATGTGACCTCACACTAAGGGACTCTCAGCAAGTGCTGGTACTGAACAGACAGTCAAATCTGAATGCAATCAGCGCCACACAGAACTACCTGGCCAATTTCAAAGACAACggcgacgatgatgatgattacgTCGAAATCCGCTCTGAGGACGAGAGCGATGGCATAGAAAAGGGCTGTACAGCGAGCCCAGATTCAGCTCTGCACGGCTACATCTGGAATGACCCGAGTGACAGTCAGCAAGCGCTCAATCAGCCCAAAATTGTCCAGTCGCTGCGAGAGAAGTTCCAGTGTCTCGGTTCCAGCAGCTTTGCATAAGGAACAGGCACGACTACCAATGTGCACTCGAGTGCAAAAATAAAGGCAATTGAAAATTACCACGTGGAAAATGTTACACGATGCAAAGCACATTTATGGATTACAGGATTACGACAACAAAATGACGACTGTGCAGTTAGGTTAAATGTTTCGCATCACAGCTTCAATGGATCTAAGTCACTACACTATATGCACTATCACAAATCACTCAAATATGACACTTCGTATTTTTCATTCGTATAATGACTCGCaatgcactacacactacttgCCATTTTGCCATAGGTATagtttcaaataaaaattttactatttaaattccttttttttttaaacacggTATTGATCTTGACTTGAACTCGCATGATTGGGCTGAGGAccgtctctctgtctgaagGTCTCTCAGTCTGAGAGAGTGGATTTTTAAGTGTTAAAGATTTTCCATCAGATTTCAGCTTTGGGGTTTTATGGCTCCCTTGTCACTTAAACTTATTcccttattttttaaattctgtaggTGCTCCAACCTGTCCATTGTCGACACTCCAGCATTGCCTTTCTCAAGCCATAACTTAGCAACCATTTTGCTAACAAATCCACTGCAAAACGTTTAAGGTAGCATTTGAAGAATTTTAACGCATTGATCCAATTTAACGTGAATGTAACCACTGATGCTCAGACAATATATTAGTGTCCGTTTGTAAGTGATCAGGCTGCCTCTACAGTTGCTACATAATGAAAATTAGGTTAATATCCACTGTTACTGGTTATGTCTGCATGACCGTTTGTTCTCCAAGgccaaaaatacattaaaatcacACATATATTTTACTAGGAATCAATAGGAAtcaatatatattgtatataagtCATAGATATATTTTAGATAGTTTGAAAAAGGAGGCCTAGCCATGCTTGCTATTGGttgtataaagttttttttcttgatatgTTTCCGTTTGCCTCAGATTTAAACTATAGAGATGACTACTGCAGTAAGCAACAAATATTATTTAGGACTGtcgtaaataaacaaataaataaagaagtcaTAATTTTAGGctaatttttaatcattactgAGAGGACCAGGTTAGCCACAGGTTACTTACAGGCTCACAGTAAGATCAGGTGTATATTTCACTTAGGCTTTTCTGGTTTAGTTAAATTTTTCCACAATCACTTGATGTCACTGTCAAACACCACACCAGATTTAtcactagtttaaaaaaaaaaaaaaaaaaaaaacaacaaaaaacactggTTCATCACTCACACATCATTCGTCACTCGGTTGACACTTTTAGaatctcatttaaatattttggatttttatttatttatttgctttcatTACCATCCTGTCGAGATACTCCAAGTCTAACGTagtgatatttattaaaaatctacCGCTGGTATTTAGCAATAATTTGGTTTAAGTTGTTTACTGTGACTGTTAATTCTTTTCCCCATGAGCACTGAGCAAGAATATTGCCATAttgacacaaataaataaagactaaatgattaaaaaacagtTATTATCAGTGTAAATGTACCAAATTGGCTAAAAATATGAATGAAGTATGTTTATAAGTTCcatgttttttcatttgtacATGTTGTTTCTTGTTTCACTGGGGACTGTTATCATTCGTTCATCTGGtttgcacttttttatttttattgttattttttatttgttaagaTGTATATTTTAGGATGTGTCATTGTGTTGCCATAGATTTGCTCTgtcttaattttaaattaaatgtactgtactttgtttttataaaactgCCTAGTTGTAACTGCTCAAGGAAACTGATGTATCAGaggcaataaataaatgttcagttCAAACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308936 lncRNA downstream 33622 24501129 ~ 24503863 (-) False tent5ab
TU308927 lncRNA downstream 83986 24448558 ~ 24453499 (-) True G260833
TU308924 lncRNA downstream 83986 24450136 ~ 24453499 (-) False G260833
TU308907 lncRNA downstream 128447 24387506 ~ 24409038 (-) False G260823
TU308915 lncRNA downstream 153753 24382518 ~ 24383732 (-) False LOC113530517
XR_004579670.1 lncRNA upstream 14548 24599111 ~ 24600250 (-) True LOC117599219
TU308974 lncRNA upstream 31471 24616034 ~ 24618044 (-) True G260858
TU309007 lncRNA upstream 97262 24681825 ~ 24701043 (-) True G260873
TU309021 lncRNA upstream 108772 24693335 ~ 24694246 (-) True G260885
TU309005 lncRNA upstream 113406 24697969 ~ 24698424 (-) True G260871
XM_026920654.2 mRNA downstream 1411 24528290 ~ 24536074 (-) True tcp1
XM_034312175.1 mRNA downstream 29017 24501733 ~ 24508468 (-) True tent5ab
XM_026921293.2 mRNA downstream 29018 24501733 ~ 24508467 (-) False tent5ab
XM_026920906.2 mRNA downstream 51157 24477368 ~ 24486328 (-) True elovl4b
XM_026920907.2 mRNA downstream 63563 24468096 ~ 24473922 (-) True LOC113530682
XM_034311592.1 mRNA upstream 8310 24592873 ~ 24597659 (-) False prelid1b
XM_034311591.1 mRNA upstream 8310 24592873 ~ 24597659 (-) True prelid1b
XM_034311694.1 mRNA upstream 53728 24638291 ~ 24645733 (-) True LOC113530806
XM_026921135.2 mRNA upstream 53728 24638291 ~ 24644772 (-) False LOC113530806
XM_026921207.2 mRNA upstream 117817 24702380 ~ 24705329 (-) True LOC113530848
XR_004579755.1 other downstream 29018 24501733 ~ 24508467 (-) False tent5ab
TU308938 other downstream 29152 24505628 ~ 24508333 (-) False tent5ab
TU308180 other downstream 773322 23763674 ~ 23764163 (-) True G260310
XR_004579695.1 other downstream 1297139 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 2088058 22446030 ~ 22449427 (-) True G259306
XR_004579701.1 other upstream 203127 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309105 other upstream 296395 24880958 ~ 24883145 (-) True G260947
TU309088 other upstream 399896 24984459 ~ 24990531 (-) False si:ch211-149b19.4
TU309124 other upstream 406013 24990576 ~ 24999848 (-) True si:ch211-149b19.4
TU309131 other upstream 456228 25040791 ~ 25042595 (-) True G260972

Expression Profile