RNA id: XM_034311874.1


Basic Information

Item Value
RNA id XM_034311874.1
length 658
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC113530834
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11004836 ~ 11006641 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTAAAGCTGGcgaaaacatgaaaacagaaGTCTCTACAGCTGCTAACTTTATCACCAGTTTGCTCAGGATGACTGGCCTTCTTCCTGAAGATCATCTTCATCACTTCAGCTTTTCCCTGCAGGAGGCGCTGCTTGAGCACTATGAGCAACACTGGTTTCCCCAAGCCCCTTGCAGAGGGTCTGGCTACAGATGCTTGCGCATCAACCACAAAATGGACCCGTTGATAGGCAAAGCTGCCTTTGCTATTGGCATTACACAGCAGAAACTTTTTTCCTTGCTTCCAAGTGAGCTAACACTATGGGTGGACCCAAATGAGGTGTCGTATCGCATTGGTGAAAATGGATCCACTTGTGTACTGTACGAGTCCACGCCATCTGCTGTATATACTGGCACAACAGATCAAGAAGCCAGCTGTAAGGGAAAACTGAGAACTGAACAGTCAAAGTCTTCAAAGCGCTTCAGTATGATGACCAGCTTGGGTTAAATGCTGTGAAACATTTTGTACTTGATATCTTTATTTTCATGTGGATGCTACCCCTTGTTTAGAACATTAATACCTTTAACTGCTCATAGATTAAAGCTTTGATAGATGCTGTTCTATTTCTCGCAATTGCATCATGACAAATACAAAGTTTAtatcaggaaacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299445 lncRNA upstream 5016 10998081 ~ 10999820 (+) True G252955
TU299384 lncRNA upstream 43194 10949669 ~ 10961642 (+) True G252903
TU299383 lncRNA upstream 51654 10949669 ~ 10953182 (+) False G252903
TU299371 lncRNA upstream 57923 10945080 ~ 10946913 (+) True G252893
TU299171 lncRNA upstream 225432 10778540 ~ 10779404 (+) False si:dkey-32e6.3
TU299459 lncRNA downstream 31577 11038218 ~ 11039431 (+) True G252966
TU299500 lncRNA downstream 97498 11104139 ~ 11104527 (+) True G252996
TU299682 lncRNA downstream 238120 11244761 ~ 11245472 (+) True G253152
TU299681 lncRNA downstream 239257 11245898 ~ 11246862 (+) True G253151
TU299753 lncRNA downstream 364062 11370703 ~ 11372352 (+) True G253210
XM_026921426.2 mRNA upstream 7403 10994877 ~ 10997433 (+) True rpl10
XM_034312119.1 mRNA upstream 72870 10930247 ~ 10931966 (+) True si:dkey-93l1.9
XM_026920320.2 mRNA upstream 77627 10918275 ~ 10927209 (+) True haus7
XM_034311611.1 mRNA upstream 77627 10919197 ~ 10927209 (+) False haus7
XM_026920501.2 mRNA upstream 92269 10872029 ~ 10912567 (+) False atp2b3b
XM_026921369.2 mRNA downstream 3140 11009781 ~ 11014655 (+) True ognb
XM_034312183.1 mRNA downstream 44882 11051523 ~ 11079274 (+) True dnah12
XM_034312184.1 mRNA downstream 44882 11051523 ~ 11076063 (+) False dnah12
XM_034312190.1 mRNA downstream 72636 11079277 ~ 11088628 (+) True asb14b
XM_034312191.1 mRNA downstream 72636 11079277 ~ 11088628 (+) False asb14b
XR_003403205.1 other upstream 8093 10996609 ~ 10996743 (+) True LOC113530991
XR_004579720.1 other upstream 92303 10872029 ~ 10912533 (+) False atp2b3b
TU299368 other upstream 153491 10848851 ~ 10851345 (+) False b4galt3
XR_004579736.1 other upstream 665631 10292606 ~ 10339205 (+) False kcnab2b
TU297603 other upstream 2378974 8621005 ~ 8625862 (+) False LOC113530359
TU299671 other downstream 224788 11231429 ~ 11237362 (+) True oard1
trnah-gug_14 other downstream 253206 11259847 ~ 11259918 (+) True trnah-gug_14
trnaf-gaa_28 other downstream 260970 11267611 ~ 11267683 (+) True trnaf-gaa_28
XR_003403199.2 other downstream 385951 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other downstream 393395 11400036 ~ 11415449 (+) False wu:fa11c10

Expression Profile