RNA id: XM_034311876.1


Basic Information

Item Value
RNA id XM_034311876.1
length 5025
RNA type mRNA
GC content 0.41
exon number 10
gene id cables2b
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13590465 ~ 13621861 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGAGCAGGGTTTGTGTTCCTCAGTGGAGAATGGCGGCGGCGGCGGCTGCGGCTGTGTGCAGTCCGCTCAGCGCTTGTCCGAGCAGCGCACATCCGCGGAAAAGCAAAGACACGCGGAAGAGACGAGCAGCTCTGTTGTTTCTCACTAATATCTCCCTGGACGGGCGGCCGGTGATTCACATAAACAATGCGGCGGAGTTTGAAGGCACTGAGGTCGGGTCGCCGGCGTCCGGGAGCTACGGTACTTTCTCTAACCTGGCTTCAGCGAGTGCACTCCTGAGTGTGCCTCCTATTCTCGTTCTGCCCTCTGACTCGGAGTACGAGCATGCTGAGAGCGCAGAGACATTTCCGGGCTCGCTGTCCTCCTCGCAGGGGAACCTGCTGTCCCCCTGCAGCCTTCAGCCCAGTCCTGTGGGAGCGCGGAAGTCCCCGACCCTGCTGTCCGTCCAGAGCTGCGCCTCTTCTCTGGACTCCCGACAGAGgACACGCAACCTGTCAGGTTCTCACTGGTCCCGCTCCTTGAAGAAAGTTCACTTCGTTAAGAACATGAGACAGTACGACACCAGAGgcagtagGATCGTGCTTATCTGTGCCAAGAGATCACTGTGTGCTGCGTTTTCTGTGCTGCCATATGGAGAGGGCTTCTACATAAGTGACCCAGCCCTCAGCACCCCCAGGCGGAGGCACTCATCTGGGGGGATTTCCACCACACTAGAGATGCTCCCTGGCCTGGAGGGGGTGGAGCTTGGCATGTATGGCAGGACGGTGTCTTATGCCCAGTTTCTGTACCCCACCAATGCACTGGTTCGTGAGAAGCCACCAGAAATCGCTCTGCAGATGCCCTACTCCAGAAACAGCATCCCATGCACCAGCTACCCTCCATCACGCCTCAACAGCACTGTAGGCTTCGATTTGGgccTGGATGACACTGATTATGACCCCAACCTGCTAAGTGACCCGCAGTGGCCTTGTGGGAAGCATAAGAGAGTCCTGATCTTTGCCTCCTATATGactACAGTAATAGAGTATGTGAAGCCATCAGATTTGAAAAAAGACATGAATGAGACCTTTAAGGAGAAATTTCCTCACATCAAGCTCACGCTCAGCAAGATCAGAAGTTTGAAGCGAGAGATGCATACGGTGGGGGAGGAGTGTGCTCTGCAGCCGGTCACCATTGCCATGGCATTTGCGTACTTTGAGAAGCTCGTCCTTCAGGGCCGCCTCAACAAGCACAACAGGAAGCTGGTGGCCGCCGCTTGCCTCCTGCTAGCTGCCAAAATCAGCAGCGACTTCAAAAAACAAGAAGTCAAACAGCTGATTGATAAGCTGGAGGAGAGGTTCCGTCTTAGCCGGCGTGACCTGATCGCCTTTGAATTCACCATCCTGGTGGCTCTGGAGATGGCCCTCTACCTTCCCGACAGCAAGGTCATGCCACACTACCGCAGACTGACCCAGTCGCCAGTGGCACATGTTAAAGTTTAGCAGTTGTCAGTGGGGATGTATATCTACACTAAGCTCTGGGGATGAGAGAGAAGATCTATTTACACTCCGTCAGGCTAGTACTgagtctgtgtgttttatagttAGTATTAACTTCTGTTATAGTTAGTATTTAACTTCTGTTCTGGGGGAGATTATATGGCAGGAATACTAGACGAAGAGAAGGTTTTAAATCAATTCTAAGCACTCAGATAACAAGGGAAGCCTTTTCCCAGATcccgcctgtctgtctgtgtgtctgtctgtctgtgtgtctgtctgtgtgtctgtctgtgtgtgtctgtctgtgtgtctgtctgtgtgtctgtctgtgtgtctgtctgtgtgtctgtctgtgtgtctgtctgtacgTCTTCCACATCAGTTTGcctaaaataacttttttttttttttttttaatttttatctgtAATTTAAAGCAGAACACTCCTTTTTCACATACCTGCACACTGTATTACAGCCTAACAGAACTTACACTCTCTACAATGATTATATTCAGGCATTTCCCACAGTATAGAAAGGTTTTATTCATCTGTATGTTATGCAGTATATGAATTTTTGAACACAGATTATATTATTGCTATCACACGCCTGTAGCAGTAGTATGTGATCAGACTCCGTTTGCAGTATTTGGTCATGTTCTGGGTTCTATAAGAGATTTTAAGGCTCTGGATTTAAAAAGTGCTCTATATTAGAGCTGATTTGAGCTAAAGTGCATTTAATGTGCTTCTCTGTTCTATTATTTTCTACTTTTAAACTTAATTGGCCTTTAAAATATAGAGTGTGGCCCAGTATATTTGCCCAAAGGTATTTATGCTTTGTTTATCATGGTTAGATAATAGCTACAGTGTCACTGTGAAcattaatatgtatttaatgGGGCACTCAATACAAAGCCTGCAGCACTTCCTGTTCTTTTAGGATGCTGAAAAGCACAGATTAATAATAGAGATTTACTCTCTATGACAACCCTAATGTATCACTGGAATGGTTTCATTTTGCTTCTTGTCTCCGAGATTTACTTGGACACTCTTCAGTCGCTGTGAAGCAGGAGCGTGAAACATAGTGCCTAGTAAACATGAAAAGCTTTTGGATGCGTGCTgtaaattaaaatcaatttttttttttaactctgttaTTCCAGTAGGTGGCAAAATAGAGTAATAAACTTCATTTCATTAGCAAACTGAAAAGTTGACGCTGCAGCCACATCTCTTTCCATAAGAACTAGTTTAGGGTTTTTCCAAGCAGGGGaaaaccctaaaaaaaaaaataaataaataaaaataaattttgaaaaaGGGCAAATACTTATGCAGTCATAaccttttacaatttttatttgtaaacatttgcAAACTATACTGAGTCGTGTAGAATCCTGATATATAATGTATGATGTATAATCCTAAttcaaagggggtgaatatttatgcaaaccTTAGTGTACATAtggtaaaatgtgtgttttattttggtaaTGAATTGCAGTCTGTTCATCTGTAGGCGATATGTGTTTAACCTTTCTGATGAACAcagataaatgaacacatttaagcggagttgttgatgtgttattggtctactaaactgatttttttgggTCTGGCCCAAGTGTAATGAGGATCGTTACTTAAAATGAGTTTGGCGCGGCTGCTGTACAGCGTCAGTATTAAAAGTATCATTTCCGTTATAGCTGACAGTGAGAGACTCTAATACTCGGGTCAGCCGGCAGTTGTGCTGTGTGTTAATTAGCAACTTTTATGCAGGATTCTCCTTTATTCTGATGCCTTTTAACCAGCATTCACCTTCCCCAAACTATCTAGAGATAAATAGCTTGTAGGGAGCTGCTGTAAGTGAGAACTCAGAAGTAACTAGTGGAAATATTTAAATCCTGATTCTGCTGTGCTAGAGTAAACCTGCAAAGCTAATGTGATATGTTTTCCCTGATATATAATGCAAAACTGCTGCAAGGCTCGTTCTTATTCATTTGTaatttgtgtttggtttttatgAATGCAGCGTGCAAAACCCATGAGTAATATCCTCCACCATCAAGTGTCAGATAAAACTCCTTCACACATATCAGCTGATCACAGTTAACTAGAATCGAATGGGCACTGAGATTAAAAATCTAGAGCACTGTGTTCATATCAagtcttccttccttccttccttcatacCGTCATACCGTTGTATCGTCATACTCATTTACAAACGTCTAATATACTTTATTAGCAAACGTTGTGTActggtgttgtgtgtatgttttatatattgaCGATGTTGTGTGCTCTCTGTAAAAATACTGTACTCTTCAGAGACGACAACAAATTCAGACATTTGCACTTTAACAAAGCgggatgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgaactgCTGAGTTTGCTACATTGATTTAAGTTAACTGAGTCTATGGTAAATGTATAAAGCACTGTAGTTGATAGAAATGGAGCAATTCTTCACTGCAGTCTGAAGAGACTGGTACAATACTTaatattatgcaatattttttggaaTTGTGTTAACCTGTCTGTGGCATTTAAGATGCCACCTTTTGTTAAACATTGGCAATAATTCtgagtttgaaaaaaaattctttcgtAGAAGACATATTTTTCCAATTTCAGATGTTGAGAGCCAGCATTTATTTTCCGTTAATTTTGCTGATggtttttatctttaaaatttGTAACCCAAGCATTTCAAGTAGAAATCTAAGCTAATATGAGTGTTGACTGAGGACTTGGATTACTTGGACGTTCAAGTCTCATTATAAGTGCCTGAgcaaatgattaattatttgtCTGAATGCCAAACCTCAATAGGATaatcagtaaaatatttcactgtgattttttttttttggttgaaagCAGCACTATTTCTCTTCAGTTCTCACTGCACACCGTTTTTCATTTAAGCAATGCAGCACTAAAAGGTCAGATTTGTACTTTTGACTACATCCGTTAATTTAGTAAAGCACTGATTCATTCCTGTGTCAGAGCAGAGAAAAAGACCAGCATGATATCACATGGGTGTAGGTAGAGATTTAATAATTACAGTCATGCagtttttctgtgatttttcatATTGGACAGGCCATGTCTAGATAATAACGCAGTGTAACCTTCAGTTTCTGATAATGTCATGTGCAATCTGTATCTGAGAAATACTATACATTCTCTAATCCATGCAGCATCCATTCAATCAATAtccaatttgaaaaaaaaaggacaaactgtttttttttttcgtatttTATTCATAGACTGTTTCAGCATCCAAATCCTAAAATCTcagcattttctcattttcagtttCCCATTCTTAACAGTAAAACAGCTAATAAGGAAAAAGtaaatctttaaattaaaaaaaaaaaaaaaaaaaaaatctcttttttatCGACACACACAAAGATCAACAGCAGGGGGAGATATGTGGATTTGAACAAGGACGAGGCGGGAATGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301054 lncRNA upstream 82682 13507551 ~ 13507783 (+) True G254287
TU300872 lncRNA upstream 597253 12993002 ~ 12993212 (+) True G254123
TU300771 lncRNA upstream 620456 12968371 ~ 12970009 (+) False kif3b
TU300770 lncRNA upstream 620456 12968408 ~ 12970009 (+) False kif3b
TU300743 lncRNA upstream 656164 12933229 ~ 12934301 (+) True G254006
XR_004579672.1 lncRNA downstream 99423 13721284 ~ 13722885 (+) True LOC117599220
XR_003403196.2 lncRNA downstream 101504 13723365 ~ 13727382 (+) True LOC113530938
TU301262 lncRNA downstream 205823 13827684 ~ 13832691 (+) True G254472
TU301436 lncRNA downstream 410255 14032116 ~ 14032333 (+) True G254633
TU301453 lncRNA downstream 433355 14055216 ~ 14055962 (+) True G254644
XM_026920625.2 mRNA upstream 2724 13574516 ~ 13587741 (+) True ccm2l
XM_026920626.2 mRNA upstream 2724 13574533 ~ 13587741 (+) False ccm2l
XM_026920323.2 mRNA upstream 19164 13509588 ~ 13571301 (+) True xkr7
XM_034311539.1 mRNA upstream 101954 13466509 ~ 13488511 (+) False sox18
XM_034312171.1 mRNA downstream 439847 14061708 ~ 14067419 (+) False snx21
XM_034312168.1 mRNA downstream 440569 14062430 ~ 14067419 (+) True snx21
XM_034312169.1 mRNA downstream 440569 14062430 ~ 14067419 (+) False snx21
XM_034312170.1 mRNA downstream 440569 14062430 ~ 14067419 (+) False snx21
XM_034312167.1 mRNA downstream 440570 14062431 ~ 14067419 (+) False snx21
XR_003403145.2 other upstream 739470 12837051 ~ 12850995 (+) False rbbp8l
XR_004579730.1 other upstream 1205891 12366743 ~ 12384574 (+) False LOC113530266
TU300294 other upstream 1446938 12141487 ~ 12143527 (+) False ppdpfb
XR_003403157.2 other upstream 1469093 12113622 ~ 12121372 (+) True trim101
TU299947 other upstream 1690101 11892150 ~ 11900364 (+) False G253367
XR_004579688.1 other downstream 448367 14070228 ~ 14072158 (+) False wfdc2
TU301462 other downstream 448408 14070269 ~ 14072216 (+) True wfdc2
TU301463 other downstream 448408 14070269 ~ 14072216 (+) False wfdc2
TU301848 other downstream 1047943 14669804 ~ 14673952 (+) False G254991
TU301849 other downstream 1047943 14669804 ~ 14673952 (+) False G254991

Expression Profile