RNA id: XM_034311885.1


Basic Information

Item Value
RNA id XM_034311885.1
length 4805
RNA type mRNA
GC content 0.44
exon number 29
gene id ptpn22
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19439436 ~ 19465336 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGTTGGACAGAatgagaaatggagagagagagaaaaagagagagagagagagagagagagagagagagcagaaaaaagACTAGTGAGAGAGGCAAAGTGAGAGAAGAGAACAAGTTAGCAAGAGAGAGGTAGAGATGAGAACAGTGGTGGTATTTTTATTCTGACCACAGAAACCTCTTGACAAGCTTCCGTGACGACAGCCCATCTAGTGCTTCTGCACTTGGGTTCCTCAAAACTCAAAACTTGGGCAACTTCTCAGCTGAAGGGAGCGATGACAGACAGgctgagtgaaagagaaagaaagagagagtgagtgagagaagttgagagacagagggggagagagagagagaaacagagtgtaCAAGCCACTGGGGCCTTCAAAGCCATGTGACATGACAGAGGGCACTGCCGGGGGACGCGCCGCACTATGGAACTCCAAGCTCAGCTCCTGAGGAGCTTCCTGGCCCAGTTTGCCAGCAAAGAGGCCACATCAGCTCATGAAGACGGTGCCTATGCTGTTGAGTTCTTGAAACTGAAGAGGCAGTCCACCAAGTACCGCACAGAGAAGACCTACTCCACCAAGGTTGCGGAAAGGCAGGACAACGCGAAGAAGAACAGATATAAGGACATTGTTCCATTTGACCACAGCAGAGTGAAGCTCTCACTGAACACCTCCAAAAATGACACGGACTACATCAATGCCAATTTCATCCGGGGAGTTTGGGGGCCAATGGAATATATTGCCACTCAAGGCCCACTGCCACACACAGTTCTGGACTTCTGGAGGATGCTTTGGGAATACAATGTGCAGgTTGTCGTGATGGCTTGCAGGGAATTTGAAATGGGAAGGAAAAAGTGTGAGCGCTACTGGCCTGAAACTATGGTggatgtatttgtgtgtgagcCATTTACAATATACTGTGAATCAGAAGAGAACAAGGGAGACTATTTGATAAGGATCCTGAAGGTGACTTATAATAATTCATCTCGCACACTGAAGCAGCTGCACTATATGAACTGGCCTGATCACGGTGTTCCAGACTCCATCCCCCCCATTCTGGAGATGCTGCAGGACATGCGTATGTTCCAGGAGCAGGATGATGTCCCCATCTGCATCCACTGCAGTGCCGGCTGTGGAAGGACAGGGGCACTGTGTGTCATTGACTACACTTGGAACCTACTGAAAAAACAaATGATACCAGAGGACTTCAGCATCTATGACCTGGTTCAGGACATGAGAACACAGAGGCCTTCCATAGTCCAAACTAAGGAGCAGTATGTACTGGTGTACAGAACGATTAAATTCCTGTTTGAGACACATCTGCAGATGATAGAAGTCAAACTCAAAGAGAATGGAGAAGTCAGATTGTTGCCTAATGATGAGCATTTGTCCTTTAACATAAATCAGGTTCTAGCTGCACCTACACCCATCCTTGTAGATATTGACAGCAAGGTTTCAGACTTCAGTGAGGATGAGCCAGAGCCTGTAGAAGAGAATAGGCCGCATCCATGCTATGACCCCAGGTGTCCTGAAAAGGAAGTTCCTACAGAATTATCCAACCATGTTGCACCAAGTGCAGTCTTGCAGCCACTGCCACCTCATATGCGATCTGCCAGTCCACTGGGCCCCAAACGCACACCAACAGATGTGCTCAATGACATGAAGAACTGGGCCAAGTCTAAAATTGCCCAGATACCTAAGCCTCCTTCACTTCAGGAAACAGATCTTGGACACCAGAAATCCCAGATACTTGGACCTCCTCTTCTGCAGCAAACAGATCTTGGATACCAAAAGGCCCAGATACCTAAACCTCCTCGACTTCAGAAAGCGGATCTTGGATGCAGAAAGTCCCAGATACCTGAACTTCCTCCATGTCAGGAAACAGATCATGGTTACCAGAAATCACAGATACTTGAACCTCCTCTTCTGCAGCAAACAGATATTGGATACCAAAAGTCTCAGATACTTGAACCTCCACCAACTCAGCAAACAGATCTTGGATACCAAAAGTACCAGATACCTAAACCTCCTCGACCTCAGAAAGCAGATCCTGGATGTGATAAGCCCCAGATACCTGAAACTTCTACAACAAACCAAACCCAGCACACTGACACTCTGAAATCCAATAATCCCATCAGACCAACATCAGTACAGGAGTCCAGCCCACATCACATGCATCAGGCAGAAATTAACAATGATGGTGCTCTTCTCAAGATTCCTTCCATTTGTCTTACAGTGGAGGATCCATATTTTGGCCCAGATTCTCCTATGTCCACTGGGTCTACAGAGTGTACAGGAGCAGTACCCCTCAGCATGAAGAACCCTTGTTTCACTGGCCCCACTTTGGATCTTAAAAGTCAGAGTATTGAACTGCCAATGCAGGACAATAGTACAGGTGTGACTACACCTATGTCTGATGAGGACAGTCCTCCTCCTCTACCGGAGAGAACCCCAGAATCCTACATTCTGGCTGATGAAGAACGTCCACAAACTCTCACTCCTACTCTTCTTCAGTGCACTGATTCATCTCTACCGAAtgCCACAGATATGGGCAATATGGGCGATACGGCTGATAAGGGTGACACAGGCAATATGGGCGAGATGAGCATCGACCAGAACTTGACGTTGGTCATCCCACCCGATACTGTTTCAGCAAATGGAGGAGGAAGCCCTCCGTCTCCTGCACCGCCTTTGCCAGAAAGAACTCCAGAATCTTTTGAAATGCCTAATGATGAAGATTTATTACGGATTGCGGTACAAGAAAAGCCAGAGAAAACTGTGCTCAGGGTCGGGAAATCTTCTGAATGGTCTGGGAATTCAAACGTAGATGTACCAGACTTTAACAGGTCCTGGTCCAGGAGCAAGAGTTTAAGAAATAGACTGTCACTTAATGTTCCAGTTAACAACCAGTTAACGCCTTTTGCGCCACTTCACATACCATCACAAGAACCTTCAAAAAGTCTCACTCCTCCTCTCCCTGAACGCACACCTGATTCTTTTCTGTTGGAAGCTTCAGGGACACCAGCTCCTCTTACTCCTCCACTCCCTAGAAGAACCCCAGAATCTTATATTGTAGTCACAGAAGAAGCTCAGAGCAACAGCGCCTCCTGTCAGTCCGACACAGTCCAGCAAAGTCAGAGACTGGGCACCTCATCTGAGTGGGCAGGAAACTCCCAGCCCAGGACATTCCTAGAGGTGATGACCAGAAGCAAGAGTGTTAAAGTGAAAAGTTCAAAACAAGAGTGTTTATCTGTGGTTCCTCAGCCTGATCCAGATGTTGGGGCTACAGCAGAGTCTGTATCACCTAGAGCAGAGGACCAGATATCAGTGGACAGCAGACGTCCTGCAGTGGAGCAGCCTGAGAAGACATCACTACCCAAAAAGTCCAGGACCAAGAGTTTGAGGTTGTggaaaggaaaacagaaaaTGAAAGATGCTCCTGGGTCTGCTTCTGTTCCTCCAAACCATGGTGCTACTACAGGATTCGTATTTAGTTTTGGAACACGTTTTGGGAAACCCAAAGGACCGAGGAGTCAGCCAGAAACATGGGTGTAAATCAGACAGAACAGGAAGTGCCTCACAGCAGTCAGTGATGGAGTAACTGCCTGCCTACATCAGGTTCCcatgtgatgaaaaaaatgactgataTACAAGAAGACAAACGAGAGAACGAGATTCCTTAATGAATGGAGCTCAGAGGCTACAAGTGTTAATTAAACTGGCTTTTTGGTCAATAACTCAGGCGcttgctgaaagaaaaaaaaaaatcttgcaatCACTATATTTATTGTATAGTGGATTTTTTTGGGCTCAGGTGAAATCCCACAAAGCATTGCAACAAGTAGTGTCCAAACTATGTACCATAGTGAGTAGAGAATAACCTTAATGCATCTAAGACATATGATTTCCAGTCTGGGAGAAACCCTTCATGTGGCGAAAGTTTGACATGTTCTTCTATACATAGTACTGAAAGCTGAACTATAGACttccctgaactgaaatatttttctcttttgcatgtatcccAATCACAAGTTGTAGCATTTTAGAGTACctttaaaagtgaaaaggaaggAAATTTTAGATTTAAAGATTCTCTGTCTCAATAGTTACCACGAATTAAATACTTCgtggaaatgaaataaatcttaATTTATTCTTATGTATGAATTCGTGGccacaccttattaaaaaataaccacagtcACCTTAGCAACTCCATAACGGAGTAACGCTGCATACAagttagggttttttttttctttatgttacCCACTCATTCATCTGTACTCTTTTGCGTATTTTATTGCAGTTGTATCAAACAGCCATTTTTCTGTCTCCTTCTTTTTACATCTATATGGTACTgctttgtcaaaaaaaaaagttaaattaatgAGTGATTTTAGCTTTACTACTGATTGATCCTCTTCTGTTAGACAATCAGGATCAACCAAAGGACTGCTGCATTGCTCTGTAACATGTATGCTACTGTTTAGTCAGTCATTTGCACTATAACTTTATAACTTttcagtatatttatatatgacaGGGTTGTAGCAGTGTGGACTGTCTCAGTGACTACTAGCTCGTAGGGCACAACCAGACTGGTACGAGCTGGAAAGAAATTTCTAGCTGATGTCTGTATAAGCATACAGTTGATTcgtattttattcattgtgtgtgtaaatagcAATGTTCTCTTTTTTGACATGTATATGAAAATTAGAGGTGGAATGGTATGaataatttaaacataatttaatgCAGGAagtgttaaattattatattaattacaaTGCA

Function

GO: NA

KEGG:

id description
K18024 PTPN12_18_22; tyrosine-protein phosphatase non-receptor type 12/18/22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304535 lncRNA upstream 33915 19403496 ~ 19405521 (+) True G257287
TU304530 lncRNA upstream 45533 19393537 ~ 19393903 (+) True G257283
TU304499 lncRNA upstream 78385 19357511 ~ 19361051 (+) True G257255
TU304502 lncRNA upstream 79696 19354727 ~ 19359740 (+) True G257256
XR_003403138.2 lncRNA upstream 88588 19346311 ~ 19350848 (+) True LOC113530341
TU304933 lncRNA downstream 394 19465730 ~ 19466227 (+) True G257609
TU304932 lncRNA downstream 1356 19466692 ~ 19470918 (+) True G257608
TU304947 lncRNA downstream 15774 19481110 ~ 19481575 (+) True G257623
TU304997 lncRNA downstream 166263 19631599 ~ 19705063 (+) True si:ch73-206d17.1
TU305000 lncRNA downstream 195302 19660638 ~ 19666585 (+) True G257671
XM_034311659.1 mRNA upstream 107462 19322799 ~ 19331974 (+) True atp6ap1b
XM_026920185.2 mRNA upstream 129602 19295519 ~ 19309834 (+) True itih6
XM_026920186.2 mRNA upstream 129606 19301726 ~ 19309830 (+) False itih6
XM_026920194.2 mRNA upstream 145235 19283497 ~ 19294201 (+) False pfkfb1
XM_026920204.2 mRNA downstream 160193 19625529 ~ 19633180 (+) False si:ch73-206d17.1
XM_026920800.2 mRNA downstream 319235 19784571 ~ 19794997 (+) True zgc:158263
XM_034311905.1 mRNA downstream 374375 19839711 ~ 19848662 (+) False zbtb48
XM_026920864.2 mRNA downstream 375517 19840853 ~ 19848661 (+) True zbtb48
XM_026920865.2 mRNA downstream 375517 19840853 ~ 19848661 (+) False zbtb48
trnae-cuc_34 other upstream 406448 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 527722 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2318495 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 2931056 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 3043224 16373242 ~ 16396212 (+) False LOC113530371
TU304946 other downstream 12966 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 925473 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 1044908 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 1437769 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 1437811 20903147 ~ 20905073 (+) False ubxn10

Expression Profile