RNA id: XM_034311887.1


Basic Information

Item Value
RNA id XM_034311887.1
length 8788
RNA type mRNA
GC content 0.50
exon number 45
gene id flna
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10942875 ~ 10973775 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAGCGCGCTTAGAGATAGAAAAGGGTTgccctcctccttctcttccacCTCTTTGATACTTTACCAATTAAGGTTCTCGTGTTAggagaggagaaaaggagaTAGAAAAGAACAAGAGGGTGTCACTCGCGTTCTTTCTGGAGTTCACCGAGCTCGCGCTTTCCCCTTAGGGAGACTTCAGTCCGGCAGGGAGGGACACTGAGATAGTGCACTCTTCTCCGCGTAACGGCGTGAAGCACTCACAAGGTACCATCTTAAGGCCATTCGGAAAACATCGCGAAACATTTACAAGAACTCAATACAAGAGCACAGAGCTCTTAGCAAGACTccaccctaaaaaaaaaaaagtgagaatcGTAGCGAGGCCGAGCGGAGAGCATAAGAATGAGTCAACACCCACGCCTGCACCAGTCGAGCGCTGCCTCAGCCACATCCAACGCTTCTCTCGCCCCGGACAAGGACGCCGACATGCCCGCCACGGAGAAAGATCTGGCCGAGGACGCGCCATGGAAGAAGATCCAGCAGAACACGTTCACTCGCTGGTGCAATGAGCATCTGAAGTGCGTGAACAAGCGCATCGCAAACCTGCAGACGGACCTGAGCGATGGTCTGCGCCTAATCGGGCTGCTCGAGGTGCTCAGCCAGAAGAAGATGTTCCGCAAGTACAACCAGCGGCCCACCTTCAGGCAGATGCAGCTGGAGAACGTGTCAGTGGCGCTGGAGTTTCTCGACAGGGAGAATATTAAACTCGTGTCCATAGACAGTAAAGCCATTGTGGATGGGAACCTGAAGCTCATCCTTGGGCTGATATGGACCCTCATTCTGCACTACTCTATCTCCATGCCCATGTGGGATGAGGAAGAGGACACTGATGACGCCAAGCAGAAAACGCCAAAGCAGAGGCTCCTGGGCTGGATCCAGAACAAGCTGCCCGAGCTGCCAATAACCAACTTCAGCCGCGACTGGCAGTCAGGCAAAGCTCTGGGAGCACTGGTGGACAGTTGTGCCCCAGGTTTGTGTCCAGACTGGGACTCCTGGGATCAGACAAAGCCTGTGGACAATGCACGTGAGGCAATGCAGCAGGCTGACGAGTGGCTCGGTGTTCCTCAGGTCATCACTCCAGAGGAAATTGTTGATCCCAATGTGGATGAACACTCGGTTATGACATACCTGTCACAGTTCCCCAAGGCAAAGCTGAAACCTGGTGCCCCACTGCGCCCCAAACTCAACCCCAAAAAGGCTCGTGCCTATGGACCAGGCATTGAGCCCACTGGTAACGTAGTGATGAAAAAGGCTGTGTTCACTGTGGAGACAATCAGTGCAGGCCAGGGAGAGGTGCTGGTTTATGTAGAAGACCCAGCGGGACATCGCGAGGAGGCTAAAGTCACTCCCAACAATGACAAGAATCGCACTTACTCAGTAGTCTATGTTCCTAAAGTAACTGGGCCACATAAGGTAACAGTGCTGTTTGCAGGCCTGCATATTTCAAAGAGCCCATTTGAGGTGGAGGTGGGGATGGCTCAGGGTGACTCCAGCAAAGTTACTGCCCAGGGGCCAGGTCTTGAGGCTGTGGGCAACATTGCCAACAAAACCACCTACTTTGATGTATACACTGCTGGTGCTGGAATGGGAGAAGTTGAGGTGGTCATTGTTGACCCCAGTGGCAAGAAGGACACAGTAGAGTGCCACATTGAGGATAAAGGCAACAGCAGCTACCGCTGTACCTACAAACCCACCCAGGAGGGCCAGCACACAATTTACATAACATTTGCTGGGGGCCAAATCTCCAAGAGCCCCTACACGGTCGACGTTGGAGAAGCATGTAACCCCAGTCTGTGCAGAGCCAAAGGCCGTGGTTTGCAGCCCAAAGGCCTGAGGATCAAGGAGACTGCAGAGTTTAAGGTCTATACCAAAGGAGCTGGCACTGGAGATTTGAAGGTCACCATCAAAGGGCCAAAGGGTCTGGAGGAGCCTTGTAAGAAGAAAGATTTGGGAGATGGAGTCTATAGCTTTGAGTATTACCCCACCACCCCTGGAAACTACATCATTACTATTACCTGGGGTGGCCAGCATATTCCTCGCAGTCCATTCGAGGTGAAAGTAAGCAGTGAGGCAGGGCCACAGAAGGTGCGGGCATGGGGCCCAGGCTTGGAAGGTGGCGTTGTTGGCAAATCTGCTGACTTTGTGGTGGAGGCAGTTGGAGATGACGTTGGCACTTTGGGTTTCTCTGTGGAAGGCCCATCTCCAGCTAAGATTGAGTGTGATGATAAGGGTGATGGCTCCTGTGATGTCCGATACTGGCCCACTGAGCCAGGCGAGTACGCAGTGCATGTGCTTTGTAAAAATGAGGACATCCAGCATAGCCCCTTCATGGCTGAGATCAAACCAGCACCAGACCGAGACTTTTACCCTGACAAGGTGAAGGCCTATGGCCCAGGACTTCAGAGCACTGGTCtggctgttggaaagccagcaGAGTTCACAGTGGATGCCAAACTGGGGGGCAAAGCACCTCTAAAGATCCAGGCCCAGGACAGAGATGGAAACCCAGTTGATGTGCAGGTTAAGGATAATGGTAATGGAACCTACAGCTGCAGCTACACCCCTCGCAAGCCTGTTAAACACACAGTCATGGTGTCCTGGGGTGGAGTCAATATCCCGGAAAGCCCATTCAGGATGAATATTGGAGCTGGATGCCATCCTAATAAGGTGAAAGTATCTGGACCTGGTGTTGCCAAGACAGGTCTGAAGGCTTTCGAACCAACATACTTCACAGTGGACTGTTCAGAGGCTGGCCAGGGTGACATCAGCATTGGGATTAAGTGTGCTCCTGGCGTTGTGGGTCCAGCTGAGTCTGACATCGACTTTGACATAATCAGAAATGATAATGACACCTTCACAGTTAAATATACTCCCCCAGGAGCTGGCAGCTACACTATCATGGTGCTGTTTGCTGATCAGCCTATTCCAATGTCGCCAATCAGAATTAAAGTGGATCCCTCTCATGATGCCAGCAAAGTCAAAGCAGAGGGACCTGGTCTTAACCGCACAgGTGTGGAACTGAACAAACCCACTCATTTCACTGTGAATACTAAGGGTGCAGGCAAAGCCAAGCTGGATGCCCAGTTTACTGGTCCCAACAAGGGTGAGGCAGTGCGGGACTTTGATATCATCAACAACCACGACAACACGTATACTGTCAAATACACTCCAGTGCAACAGggTAATCTGGGTGTGAATGTGACTTATGGTGGTGACCCCATTCCCAAAACTCCCTTTGCTGTGCCTGTAGCTCCTTCCCTTGATCTGAGCAAGATTAATGTTTCAGGCCTTGGCGACAagATGACTGTTGGAAAAGACCAGGAGATTACAGTCAAATCAAAGGGTGCAGGTGGTCAAGGTAAGGTTGCTGCAAAGGTGACTGGACCTGGTGGTAAATCTGTGCCCTGTAAGGTGGAACCAGGGTTGAGCCCAGAAACCAGCCAAGTTCGCTTCATCCCCAGAGACAAGGGACCCTATGAGGTGGAACTCACTTACGATGGTGCTCCCATCCCAGGAAGCCCCTTCCCTGTGGAGGCCGTAGCTCCCACTGACCCATCTAAGGTCCGTTGCTCTGGTCCAGGTTTGGAGCGAGCTAAGGTTGGTGAGACTGGCCAGTTTGTGGTAGACTGCACCAATGCTGGCCCTGCTGAATTAACCATTGAGATCATCTCTGATAATGGAACTGAAGCAGAGGTACACATCCAGGATAATGGAGATGGAACTTATACCATCACCTACATTCCCCTGTACCCTGGAGCGTACACTCTTACCATCCGCTATGGTGGCCAGGATGTGCCAAACTTCCCATCAAGACTAAATGTGGAGCCAGCTGTTGAAACCAGTGGTGTGAAAGTCTTTGGACCTGGAGTTGAAGGCAAAGGGGTGTTCAGAGAGGCTACCACAGATTTCACCGTTGATGCTCGTGCCCTAACAAAAACTGGTGGCAATCACATCAAGACCTGCATCAACAACCCATCTGGAAACTGTACTGAGGCTCTTATTAGGGACCTGGGAGATGGTACCTACAAAGTAGAGTACACTCCCTATGAAGAAGGTCCACATAGTGTAGAGGTTTCTTATGATGATGCCCCAGTGCCCAACAGTCCGTTCCGTGTGCCTGTAACAGAGGGTTGTGATCCTGcacgtgtgcgtgtgcatggCCCAGGACTGCAGGCTGGTATCACCAACAAACCCAACAAATTCACTGTGGAGACCCGTGGGGCTGGTACAGGAGGCCTGGGCCTGGCTATGGAGGGACCTTCAGAAGCCAAGATGTCCTGCACTGATAATAAAGATGGCAGCTGCTCTGTAGAATACATCCCATATGAGCCAGGGACTTACAACCTTAATATTACCTATGGTGGAAAACCGGTCACTGGAAGCCCATTCTCTGTGCCTGTTCATGACACTGTCGATCCCACTAAGGTCAAATGCCAAGGCCAGGGTCTTGGGACCAATGTACGAGCTAATATCCCACAGGTCTTCACTGTAGATGCCAGCAAGGCAGGAGTAGCTCCTCTGCAAGTCCGAGTGCAGGGGCCCAAAGGTGTTGTGGAGCCAGTTGACGTGGTGGATAATGGAGATCAGACTCACACTGTAAGCTATGTGCCCACCAAAGAAGGACCATACTCCATTAATGTGCTGTATGCTGATGAGGAGATCCCACGCAGCCCTTATAAGCTGAAGGTTCTGCCCACACATGATGCCAGTAAGGTGCGTGCCAGTGGCCCTGGTCTTAACACTACTGGGGTGCCTGCCAGCCTGCCAGTGGAGTTTACTATTGATGCCAAGGATGCAGGAGAGGGGCTTTTGGCTGTCCAAATTACTGATCCAGAAGGGAAGCCCAAGAAGGCCAACATTCGTGATAACCAGGATGGGACTTATCTAGTCTCTTATGTGCCAGATATGACTGGTCGCTACACCATCCTTATTAAATATGGTGGTGATGAAATCCCATATTCCCCATACCGCATTCGAGCTCTCCCTACAGGAGATGCCAGCAAATGCACAGTCACAGGTGCTGGAGTCGGCCCCACTATACAGATTGGGGAACAGACAGTCATCACTGTGGATGCAAAGGCTGCTGGGAAGGGGAAGGTGACCTGCACAGTGTGCACTCCAGATGGTGCTGAGGTGGATGTGGACGTGGTTGAGAATGAGGATGGAACCTTTGATATCTTTTATACAGCGCCTCAACCCGGGAAGTACGTCATCTGTGTGCGCTTTGGGGGCGAACACATTCCCAACAGCCCCTTCCAGGTCATgGCAACAGACAGGGCTATGGGAATGAATGGACTGGACGTGGCCGGACTGAGACCTTTCGACTTGGTCATTCCATTTACCATCCAGAAGGGAGAGATTACAGGTGAAGTGAGGATGCCATCTGGAAAAGTGGCCAAGCCAGACATTGCAGATAACAAAGACGGCACAGTCACAGTGAAGTACGCGCCCACTGAGGCTGGACTGCATGAGATGGACATCAAATATGATGGAATACACATTCCAGGAAGTCCACTGCAGTTCTATGTGGATTATGTCAACAGTGGTCATGTGACTGCTTATGGTCCTGGCCTCATTCATGGCATGGTCAATAAGCCTGCTGTTTTCACTGTTAACACCAAGGATGCTGGAGAAGGTGGCCTCTCTCTGGCCATTGAGGGACCCTCAAAGGCAGACATCAGCTGCACTGACAACCAGGATGGTACTTGCACTGTGTCATATCTCCCCGTTCTACCAGGAGACTACAACATCCTTGTCAAGTATAATGACAAGCACATCCCTGGTAGTCCCTATGTGGCAAAGATCACAGGAGATGACTCCATGCGCATGTCCCATCTGAAAGTGGGCTCTGCTGCTGATATCCCACTGGACATtggagaactggacctgagccAGCTAACTGCCTCTCTCACCACTCCCTCTGGTCGTGAGGAGCCATGTCTGCTCAAGATGCTCCGTAATGGACATGTTGGTGTCTCCTTTGTGCCTAAAGAGATAGGAGAGCACTTTGTGAACATTAAGAAAAATGGCCGCCACATTCCCAGCAGCCCCATTTCTGTCATGATCAAGCAGTCAGAGATTGCTGATGCCAGTCGTGTATGTGTATCTGGCCAGGGTCTTAGCGAGGCTCGCACATTTGAGCCAGCTGAATTCATCATTGATACCAGAGATGCAGGGTATGGAGGCCTTAGCCTGTCCATCGAAGGGCCCAGTAAGGTGGACATTAACACTGAGGATCAAGAAGATGGAACCTGCAAGGTCACATACTGCCCCACTGAGCCAGGAAATTATATCATTAATATCAAGTTTGCTGATCAGCATGTTCCAGGCAGTGCTTTCACAGTGAAGGTGACTGGAGAAGGCAGGATGAAGGAGAGCATCACTCGCAAGAGGACAGCTGCATCTGTTGCCAATGTCGGCAGCCAGTGCGACTTGAGCCTGAAGATTCCTGAGATCAGCATTGCCGACATGACAGCCCAGGTGACTAGCCCATCTGGGAAAGTGCACAAGGCAGAGATCATGGAAGGAGAGAACAATACTTACTGCATTCGTTTTGTTCCAACTGAAATGGGTGTTCACACGGTTAGCGTGAAGTACCAGGGTCAGCATGTACCAGGATCACCATTCCAGTTCACTGTAGGTCCACTGGGAGAAGGAGGGGCTCACAAGGTCCGTGCAGGAGGCCCTGGACTGGAGAGAGCAGAGGCTGGAGTTCCAGCTGAGTTCAGCATATGGACTCGTGAGGCTGGAGCTGGAGGTTTATCCATCGCTGTGGAGGGACCTAGCAAAGCGGAGATCGCTTTTGAAGACCGTAAGGATGGCTCCAGTGGCGTCTCCTACATTGTCCAGGAGCCTGGAGATTATGAAGTGTCCATCAAGTTCAACGATGAGCACATCCCTGACAGTCCCTTCGTGGTGCCTGTCGCCTCACCTTCTGATGATGCCCGTCGCCTTACTGTTGCCAGTCTTCAGGAGTCCGGTTTAAAGGTGAACCAGCCTGCTTCTTTTGCTGTGAGTCTGAATGGAGCAAAGGGTGTCATAGACGCTAAAGTTCACAGCCCATCGGGGGCATTGGAAGAGTGCTGCGTCACTGAGATTGATGAAGatAAGTATGCAGTGAGGTTCATTCCCAGGGAGAATGGTTTGTACCTGATTGATGTGAAATTCAATGGCTCTCACATCCCTGGAAGCCCCTTCAAGATCCGTGTGGGAGAGACAGGCCAGGCTGGAGACCCAGGCATGGTGTCTGCTTATGGGGCTGGTCTAGAGGGAGGCACTACTGGATCACCATGTGAATTCATTGTGAACACAAGCTCAGCTGGTCCTGGAGCACTGGCTGTGACTATTGATGGACCCTCAAAGGTGAAGATGGACTGTCAGGAATGCCCAGAAGGATACAAGGTCACCTACACCCCAATGGCTCCTGGAAACTACCTAATTTCTATTAAATATGGCGGACCCTACCACATTGTTGGCAGCCCCTTCAAAGCTAAAATTACTGGTTCCCGTCTGGTCACTAGCCACAGCATGCATGAGACATCTTCAGTATTGGTTGATCCTGTGACCCGCAGCGTGACCTCCACCCAGCAGGCAGCACCAGGCTGGGGCAGCTCCGATGCCAGCCGTGTGGTGGCTAAGGGCCTGGGGCTCACAAAGGGCTTCATCAACCAGAAAAATAGCTTCAGCGTGGACTGTAGCAAAGCAGGACGAAACatgcttctggttggagtggATGGTCCTAAAGTACCCTGTGAAGAGATTCTGGTTAAGCATCTTGGCAACCGGCTCTATAATGTGTCCTACCAGCTGAAAGAGAAGGGCGAGTACATCCTGGTGGTGAAATGGGGTGATGAGCATATTCCTGGGAGCCCATACCACATCACGGTCTAATGCCAATGCCTCAAGTATAAGCAGCCATCCACTGCAAGACTCCTGCATCCAAAAGATACATAAACACTGAATGTTCTCTTGctgtttcattcttttctcCTTTAGTTTGTACTACTTTTTTCAATTTGTCTGATTCCATACTCTAAGCACAGCCAGACTGTTCTTTTTCCATTGCATTCAGCAGTACTGTTTAAGCAGGTGCAGGTTATGGTGGCTCATATTCAAGGTCTACACCAGTGAGTTACTGATTGGACTTAATGTCACTGCAGCAGTGTACTTGCCTGTTTTAGGATAAGAGCTAAACTGCCATTAACAGCAGAAAGGATGAAGTGTTACATCCTCTGAAAGAGCACAGGTTTGCTTGCCAATAGGTGACAGGACAATAGTACTTCATACTACCGCTTGTGCCTTATACACAACGGGTTCAGAACTGGTGCCAGTTTTGTGGTTTTGCCCATTTTCTTTGGTGTGTGACTTCTATTTTCCATTGCACTTTGTAGAGCTGAGCACTGTCACCTTTCAATGATAAGAACCTTTTAACATCAGACTGAATTTTAGGACATTTGTGCCAatcataaagtaaataaaagggAAACTATAGATTAATTGGGCCAGAGACAAATTAAAAGGGACAAGGATTTTGTCAGGAACTATTCTTGACTTACAAATGCAAATACTCAAGGTTTCATTTTTCCTTTGGAAAGATTCCTCCCTGTTGCACTTGCTCTCACTCATTTGTTTATGTCCTTGTATAACCAGTattgcagaaataaaaaaaaaaaaattaataatgttttaagaCTGTTACAGTATTTTGATAATCAATAAAGTTTTGTCCTAAGTATTTTTGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299430 lncRNA downstream 30410 10904886 ~ 10912465 (-) True G252944
TU299404 lncRNA downstream 76179 10866236 ~ 10866696 (-) True G252921
TU299403 lncRNA downstream 77175 10865360 ~ 10865700 (-) True G252920
TU299332 lncRNA downstream 160287 10782135 ~ 10782588 (-) True G252859
TU299329 lncRNA downstream 163275 10778985 ~ 10779600 (-) True G252856
TU299463 lncRNA upstream 21042 10994816 ~ 10997436 (-) True G252967
TU299464 lncRNA upstream 21042 10994816 ~ 10997436 (-) False G252967
TU299468 lncRNA upstream 32178 11005952 ~ 11006617 (-) True G252969
TU299471 lncRNA upstream 36050 11009824 ~ 11015630 (-) True LOC113530950
TU299474 lncRNA upstream 48185 11021959 ~ 11023025 (-) False abhd6b
XM_026921244.2 mRNA downstream 1623 10932106 ~ 10941252 (-) True emd
XM_034311977.1 mRNA downstream 85913 10853017 ~ 10856962 (-) False cfap126
XM_026920887.2 mRNA downstream 85913 10853017 ~ 10856962 (-) True cfap126
XM_026921072.2 mRNA downstream 144277 10795807 ~ 10798598 (-) True tnnc1b
XM_034312149.1 mRNA downstream 304239 10636501 ~ 10638636 (-) False sinup
XM_026921186.2 mRNA upstream 25326 10999100 ~ 11004596 (-) False dnase1l1
XM_026921185.2 mRNA upstream 25326 10999100 ~ 11003766 (-) True dnase1l1
XM_034312181.1 mRNA upstream 35689 11009463 ~ 11015666 (-) False LOC113530950
XM_034312180.1 mRNA upstream 40184 11013958 ~ 11015666 (-) False LOC113530950
XM_026921370.2 mRNA upstream 40184 11013958 ~ 11015663 (-) False LOC113530950
TU299234 other downstream 304157 10636523 ~ 10638718 (-) False sinup
XR_003403171.2 other downstream 473341 10460694 ~ 10469534 (-) False usp21
TU298725 other downstream 912882 10029492 ~ 10029993 (-) True G252373
XR_003403155.2 other downstream 2364275 8566656 ~ 8578600 (-) False ttll10
TU296847 other downstream 3433128 7476274 ~ 7509747 (-) False ctnnbip1
TU299470 other upstream 40190 11013964 ~ 11015630 (-) False LOC113530950
trnae-uuc_4 other upstream 285269 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 299556 11273330 ~ 11273403 (-) True trnan-guu_24
TU299993 other upstream 482247 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other upstream 482247 11456021 ~ 11462706 (-) True LOC113530309

Expression Profile