RNA id: XM_034311899.1


Basic Information

Item Value
RNA id XM_034311899.1
length 1529
RNA type mRNA
GC content 0.55
exon number 6
gene id LOC113530552
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23523413 ~ 23527413 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagagagagaggatgcagATGAAGCTGATGAAGGCAGtattgttggtgtgtgtgtgtctgagtgtgttgCCTGCACACTGTGCGTGTTTTTCACGTGGAGCTTCAACAGCTACCTGCATGGACATGAAGCCTGGCCACATCAGCGCtcaagcacaacacacacacacagcgtctgCGGTGACCATACACACCAGCCGCGCAGTCTATCtaccacaccacacactcatggtgagtgtgCGCAGCTCTCGAGCGTTTATGGGTCTTCTGCTGCATGCACGCTCTGTAGTGGAGGACCGCGTGGTTGGAGGCGAGTTCACACTCCACCCTccgggaacacacacactctcctgccTGTCCACTGcagacacagtcacacactccgACAAGCTGCTGAAGAGGAACCTGTCGTTCACCTGGAGGGCTCCGGCTCAGCCCAGTGGGGACCTGAGATTctaTATCACAGTGGTCCACTCCTATTTCGTCTACTGGACTCGGATCCACTCAGCCGTGGTGCATGATGGGACCCGTAAGACTCGTACTGGACATGATGCTGGACTACAGAACAGAATCGTCTCAGCATCTCCGACGAAATCatcactcacacaaacacacacttctgcacacacacactcagaatacTCAAACACCACATGCACACTGATGAGTAACTTccccacacacactgtactgcccaaacacaccacacactcacactctgataaacaaacaagcatACATGACCCTGGAAATACCACACCCACACAATtatacacaacaacacacacagacatgcacacacacccccccAAAGGTTCAAAGAatcctcttcacacacacatacgcacacagaGCGGACCAGACGTTCTTACACATTTTCTAAGAAACAGCATCActtacacacaagcacacacacagacacacattgcGACTACACcaaccacgcacacacacacatcacctaACACCATGCCGATGTCTCGTTcactaacaacacacactccaacaaCACACACGTGCTCACCGGCCGCGGCATGCACCTCACGTGGTGTCACCATGGTAaccctgaaaacacacacacactcggctcATGCGTCTACACCAGCTCCatcccagcacacacactcctcaaacatactcacacacacacctgctCGCTCTCTGTCTGATCCGGTGGAGCCGAGGGACGCTCCTGAAGTGTTTGTGAAACACCCCGATCCCGAGCAACACCCGGAAAGCGGGATCAAAACCGGAGGCGGAGTCAAGGTCGAGACGGGGGCGGGGCTTGTGTCTCAGCCGGTGCTGTTGCTGGTGCTGTCGCTGGCTCTGTTGGTGGCGCTGGCCGTCTACGTCCAGAGGAAACACTGCGTCCGGCGCAGCGGCGTGTCTCTGAGCGACAGCGGGCAGGAGAGCGCAGGAGTGAGACGCACGCAGGAGTGCGGCGAGCTCGTCCAGCTGCGCAGGGTCCGAGAGAacagcctgctgctgctgcaggcCCAGTACGACATCATTACAGCACCAGggaactaa

Function

GO: NA

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03030 DNA replication
ko03410 Base excision repair
ko03420 Nucleotide excision repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307890 lncRNA downstream 705 23522215 ~ 23522708 (-) True G260071
TU307874 lncRNA downstream 48772 23474050 ~ 23474641 (-) True G260056
TU307873 lncRNA downstream 54340 23468801 ~ 23469073 (-) True G260055
TU307828 lncRNA downstream 188078 23332669 ~ 23335335 (-) False G260021
TU307829 lncRNA downstream 188078 23332669 ~ 23335335 (-) False G260021
XR_004579700.1 lncRNA upstream 341094 23868507 ~ 23872875 (-) True LOC117599235
TU308245 lncRNA upstream 347106 23874519 ~ 23875316 (-) True G260369
TU308247 lncRNA upstream 352674 23880087 ~ 23880328 (-) True G260371
TU308266 lncRNA upstream 446788 23974201 ~ 23975583 (-) False LOC113530810
XR_004579699.1 lncRNA upstream 609076 24136489 ~ 24140106 (-) True LOC117599232
XM_034311687.1 mRNA downstream 127598 23393672 ~ 23395815 (-) True LOC113530415
XM_034311749.1 mRNA downstream 164149 23331249 ~ 23359264 (-) True itchb
XM_034311580.1 mRNA downstream 205949 23308899 ~ 23317464 (-) True e2f1
XM_026920910.2 mRNA downstream 243903 23244729 ~ 23279510 (-) True ctnnbl1
XM_034311678.1 mRNA downstream 283066 23192257 ~ 23240347 (-) False LOC113530288
XM_026920812.2 mRNA upstream 20012 23547425 ~ 23556299 (-) False abce1
XM_034311948.1 mRNA upstream 20012 23547425 ~ 23556286 (-) True abce1
XM_026920106.2 mRNA upstream 29547 23556960 ~ 23562364 (-) True LOC113530272
XM_026920107.2 mRNA upstream 29548 23556961 ~ 23562364 (-) False LOC113530272
XM_026920908.2 mRNA upstream 92121 23619534 ~ 23628378 (-) True LOC113530683
XR_004579695.1 other downstream 283067 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 1073986 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 1568808 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 2168716 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 2353715 21168986 ~ 21169698 (-) True G258580
TU308180 other upstream 236261 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 974320 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 978215 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 1260277 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309105 other upstream 1353545 24880958 ~ 24883145 (-) True G260947

Expression Profile