RNA id: XM_034311958.1


Basic Information

Item Value
RNA id XM_034311958.1
length 5094
RNA type mRNA
GC content 0.41
exon number 12
gene id LOC113530519
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24351895 ~ 24370680 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTTTTAGAGTGTCTGAAAGAAGTCTGAAAGAAgataaatgtacaaatttaCACCAAGACTGCAGGAAAATTAATTTATCtgttttcatcttcagctgatGGACCGCACAAAAAGCGCTTATAGGAGATTAGATGAAGTCAAAATGGATGCAAGTGCTCTACTTGTTTGAATTGTTTGTTTGGCGTTTTTCTCTGTGCAAGTACAGTGATGTCACCAGCAGAGGTcgccaaaaataaataaaaaaaattgctgaatAAGCGCTCTGTGCCCTAGCTgtacatatattacacatactGCATTTGATGTTTATACTGTGGCATATAAGTTTATACACTTAACTGGTTACATATGCTACTGTGCACAAATATTTACTACAGTTACCTTCTATGTCACAAGATCCCAACCCTGATCATGGAGAAACCCCTGATGTTaacattttagtgtttcccttctctaacacacccactgcacctcaggaagggctgttaattagctgattagttgaatcagtgTTAAGTTATGAAATGAACACCATCCAGGTGTTCACGTTCCGCATTCTCACACCGACAGGTTTTCCTGGTTTCAGATGGCGGAACTAGACCGagtttgttgttctttttcagtttaatcCCGAGATTAAGGAGCGAGTTTGCTGGGGTTTTTTCAGTTTAATCCCGAGATTAAGGAGCGAGTTTGCTGTTCTGTTTCAGTATAAACCGAGATTAGGGAGCGGTTTTGGTGGATAATAATGCGCTAAGGAAGGAGTCGTTAAACAGtaaccATTGTTAATTGTGGAAGAAGACATGACATCCAAAATGAATTCCTCCACTCAGGACCCAGAGAATTCTGAAAGGAAGAGATCAGAGTccccagaacccagctgtgtgtccatgaagagtgatcAGTCAATTCATGAACCTTTAAAAttcagagagggagagagttcTGCTGAGCTCAGAAAGAGATCAGagtcaccagaacccagctgtgtgtccatgaagagtgatcAGTCACTGCATGAACCTTTAAAATTCAGAGAGGGACTAGTTCAGGGATTACTTCAGAAAGCTATAGAGAAAGAATGTTCTACTGAGTTTTGTTACCAAAAGACGGGAGCAAGCAGAAAAGCGCAAAAGTTAAAGTCCATATTCAAGGAGCTGGAGCGAAAGTTCATCACTATAGTGCAGAAAGAGTTAGACAGATTCATGAAGTTACttagtccagattacccagaaTGCCCTGACAGTGAGAAGGATCAGAGTGATGTGAGAGGTGGagtgctgaagatcacactgcacatCCTGAGGAACATGAACCAGTCTGAACTCGCAAACACGCTAcagaacaAATTTCTCCCTGATTGTCGTCAAAAATTCAAGTCtagattaacaaaaaaatttcagaaaatCCATGAGGGAATCTCAGACCACGGAACTGCaacacttctgaatgagatctacacagagctctacatcacagagggagGAAGTGGAGACGTTAATactgaacatgaggtgagacagattgagacagcgttcaggagaccagcaacacaggagacacccatcaaatgtaatgatctctttaaagaaaaaaacaacagaactgtgctgactaaaggagtagctggaattggaaaaacagtctctgtgcagaagtttattctggactgggctgaaggaaaagcaaatcaggatgtcatcttcatgtttccacttccctttagagagctgaatctGATGAAGGAGAAAAGGTTCAGTCTGATggatcttcttcatcactttttctcGGAAACAAAGGAATTAAAAATGAGACATTATAATCAGTACAGGATGTTGttcatctttgatggtctggatgagtgtcgacttcctctaaatttccagaacaatgagagattgtgtgatgtgacagagtcagcctcagtggatgtgctgctgacaaacctcatcaaggggaatctgcttccctctgctctcctctggataacctctcgaccaggagcagccaatcagatccctcctgagtgtgtagaccaggtaacagaggtacgaggcttcactgatcctcagaaagaggagtacttcaggaagaggatcagtgatcagatcCTGGCCGATAAAATTATCACACACacgaagtcttcaagaagcctctacatcatgtgccacatcccagtcttctgctggatttcagccactgttctagagagaatgttgggtgaagcagagagtggagagatccccaagactctgactcaaatgtacATACACTTcttgatctttcagatcaaacacaaggaccaaaagtaccatcagaaatgtgaccctgatcctcagcagaccacaGAGAGTATCCTGgtactgggaaaactggctttccaacagctggagaaaggaaacctgatcttctatgaggaagacctgagagagtgtggcattgatgtcagagaagtgtcagtgtactcaggagtgtgtacccaaatcttcagagaggagtttgggcttcacctggagaaggtgttcagctttgtacatttGAGCGTTCAGGAGTTTCTTGCTGCTTTATATGTATTTCTCTGCTTCTTAAACAGCAGAAATGTGCTTCAAGAGCAAACTactggatttgtttttttcaagaAGTCAAAAATGTCTGATTTCCTGAAGATTGCAGTGGACAAGActttacagagtgagaatggacacctggatcTTTTCCTCCgtttccttctgggtctctcacgaGTGTCTAATCAGTCTCTCTTACGAGgtttaatgccacagacaggaagcagctctcacagcaaacaggaaacagtcaagttcatcaaggagaagatcagagAGAACCtctctccagagaaatccatcaatctgttccactgtctgaatgaactgaatgatcattctctagtgcaggaagtccAAATTTACCTCAATAAAGGAGCACATAGTCGTCTCCATGGTGCCAGACTCTCTCCttctcagtggtcagctctggtgtttgtgttactgaactcagaagaggagctggatgagttcgatttgagtaaatatgacaaatcagaggaatgtcttcataggctgctgccagtgatcaaagcctccagaaaagctgtgCTGCGTGATTGTAATCTGACaggggaaagctgtagagttctgtcctcagttctcagctcaaactcctccagtctgagagaactgaacctgagtgagaataaactgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagatactgagGCTGTGTAAATGCAGTATTACAGAtaaaggttgtgctgctctggtttcagctctgaggtcaaactcctcatcacacctgagagaactgaatctgaacaacaataatccaggagaattaggagtgaagctgctctctgatctactgaaggatccacactgtaaactggagacactacaGCTACATGGTTGTAGTCTGAAAGagaaaagctgtagagctctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagtgagaataaactgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagatactgagGCTGTCTgactgcagtattacagatgaaggctgtgctgctctggtttcagctctgaggtcaaacccctcatcacacctgagacaACTGAATCTGAAATACAATAATCCAGGAAAGACAGGAATGAAGCTCCTCTCTGACCtgctgaaggatccacactgtaaactgaaGAAACTACAAACATAAATCTACATGGTAATGGATGTGTATTGGTCGAATCTGAGATGTCAAGCTATCAGATGATGTGATCAGCTGCAGTCTCCACTCTACTGAGGAGCTACATGAATCCAAACTGAAGAAAGCAGGTGATGAGGTGACCCCTCTTACCCACGACCCAACCTGCTGGGAAAACCTTTTCTGGAAACTTTATTCTCTCAGTTATAAAAGAATGATTTCTTTCACAAAAAGGAACTGGACTCTTATTATTCTCCTTAAAGGAGACACTAGAACTAATCTAGCCAGatacatatgattttttttctgtaaaatcatTCAACGGCACTTTATTACCCTTCTGATATCATAAACTGGGTTAAAGATTTTCTGTGTAGTGCGTTTTGATAAATTAAGACTAATTGCAAGCTTGCATTACAGCAGCTGGTATGTTGTAGAAGAACACGCTCACAGAGACAGCTACagctaaacacacatacagtcacacACTTGTGAATTCCGGGTTAAGTTAAATGCTGTGAACAGATATCTGCTTTTCAACAAATGTGAATGGCCATTTAATGGTATTAAGAAAGTTAATAACGTGACCTTCATGAAATACAATATGTCTGATTATGTGGTGCAATTTGATAAGCACCACTGGCTGTGGTTGCGTTCTAACTCAggatagatatactgtataataatgtataataatatatggtTTTGACAATCAATCTTGTTGCATGTTCATCAGATTTTTTCCATTACAGCAGAGAAGcaacttttatttacttttcatcAGTCCACTTAAAATTTGCACAGTTATTTTGAAGGATTTTATATAggtaaaaatgtttgaaatgtttattttatacgcCACTTAACTATAGATCATGTATACCATATATAAGATACATACTATTTATACAAAATAGTTTGATTATTAATGATTCAACCATGGATAAAAATCTACAATAAtctaaaatgtgtatatatttcagATCAGTTTATTTCTGGATGTTACGTACTTCTCTTAAATGAAACCTAATGTAAGTACAGTtcccaaaagtttacatacatctAGACTAAAGGCATTCAAACTAAAATTttatgttaccatacatttcctgtgttaagtcagtTAGGATATCTACTTTATTTTCCAAAAGTTTGGATTTCAAAACAGtatgatttatttcagcttttatatattatatcatattttagtgggtcaaaagtttacacactcTTTATcagtatttgttttcttttaattgcttgaacttgGGGCAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308500 lncRNA downstream 35480 24302005 ~ 24316415 (-) False reps2
TU308533 lncRNA downstream 45225 24305229 ~ 24306670 (-) True G260581
TU308490 lncRNA downstream 125937 24213334 ~ 24225958 (-) True G260548
XR_004579699.1 lncRNA downstream 211789 24136489 ~ 24140106 (-) True LOC117599232
TU308266 lncRNA downstream 376312 23974201 ~ 23975583 (-) False LOC113530810
TU308898 lncRNA upstream 1376 24372056 ~ 24435869 (-) False G260823
TU308915 lncRNA upstream 11838 24382518 ~ 24383732 (-) False LOC113530517
TU308907 lncRNA upstream 16826 24387506 ~ 24409038 (-) False G260823
TU308927 lncRNA upstream 77878 24448558 ~ 24453499 (-) True G260833
TU308924 lncRNA upstream 79456 24450136 ~ 24453499 (-) False G260833
XM_034311584.1 mRNA downstream 11732 24323615 ~ 24340163 (-) False LOC113530540
XM_034311583.1 mRNA downstream 11735 24321672 ~ 24340160 (-) False LOC113530540
XM_034311582.1 mRNA downstream 11735 24321672 ~ 24340160 (-) True LOC113530540
XM_034311811.1 mRNA downstream 36785 24273737 ~ 24315110 (-) False reps2
XM_034311814.1 mRNA downstream 56148 24273737 ~ 24295747 (-) True reps2
XM_034311957.1 mRNA upstream 3593 24374273 ~ 24386255 (-) True LOC113530517
XM_034311956.1 mRNA upstream 17132 24387812 ~ 24447327 (-) True LOC117599267
XM_034311961.1 mRNA upstream 25449 24396129 ~ 24402716 (-) True LOC117599268
XM_034311960.1 mRNA upstream 52345 24423025 ~ 24429005 (-) True LOC113530518
XM_026920905.2 mRNA upstream 89847 24460527 ~ 24468085 (-) False LOC113530680
TU308180 other downstream 587732 23763674 ~ 23764163 (-) True G260310
XR_004579695.1 other downstream 1111549 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 1902468 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 2397290 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 2997198 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579755.1 other upstream 131053 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 134948 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 417010 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309105 other upstream 510278 24880958 ~ 24883145 (-) True G260947
TU309088 other upstream 613779 24984459 ~ 24990531 (-) False si:ch211-149b19.4

Expression Profile