RNA id: XM_034311961.1


Basic Information

Item Value
RNA id XM_034311961.1
length 2519
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC117599268
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24396129 ~ 24402716 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGTTTAAGATGGCGGAACAAGACCGAGTTTGCTGTTATTTTTCGGTTTAATCCCGAGATTAAGGAGCGAGTTTGTTGTTCTGTTTCAGTTTAATCCCGAGATTAAGGAGCGGTTTTGGTGGATAATAATGCGCTAAGGAAGGAGTCGTTAAACAGggttgcctattattattgttattctaaATTGTAGGGAAAAGCATGACATCCAAAATGACTTCCTCTACACAGCTGGACTCAGAGAATTTTGAAAGaaagagatcagactcaccagaccccagctgtgtgtccatgaagagtgatcACTCAATGGATGCACCAATAAAATTCAGAGAAGGACAGAGTTCTACTGAGCTCAGAAAGAGACCAGAGTCACCAGaccccagctgtgtgtccatgaagagtgatgaGTCAATGGACGTACCGTTAAAATTCAGAGAGGGACAGAGTTCTACTGAGCTCAGTGACCAAAAGGGTAGAGCAGACAGAATCAAGCAACCGTTAAAGTCCATATTCAAGGAGCTGGAGCAAAAGTTCATGACGGTAGTGCAGAAGGAGTTAGACAGATTCATGAAGTTACttagtccagattacccagaaTGCCCTGACAGTGAGAAGGATCAGAGTGATGTGAGAGGTGGagtgctgaagatcacactgcacatcctgaagaacatgaaccagtCTGAACTCGCTAACACACTACAGAACAGTAAGAGTTCTGGGTCATGGGAATTTCTCCCTGATTGTCATCAAAAATTCAAATCCCGATTAAGtaaaaaatttcagaaaatCCATGAGGGAATCTCAGAACATGGAACTGCaacacttctgaatgagatctacacagatctcTACATTATGGAGAGAGGAAATGGAGACATCAATactgaacatgaggtgagacagattgagacagcgttcaggagaccagcaacacaggagacacccatcaaatgtaatgatctctttaaagaaaaagacatcAGAACAGTGCTCACTAAAGGAGtagctggaattggaaaaacagtctctgtgcagaagtttattctggactgggctgaaggaaaagcaaatcaggacatcttcttcatgtttccacttccctttagagagctgaatctGATGAAGGAGAAAAAGTTCAGTATGATGAaccttcttcatcactttttcccggAAACAAAGGAATTAAAACTGAGACATTATAATCAGTACAGGATGTTGttcatctttgatggtctggatgagtgccgacttcctctaaatttccagaacaatgagagattgtgtgatgtgacagagtcagcctcagtggatgtgctgctgacaaacctcatcaaggggaatctgcttccctctgctctcctctggataacctctcgaccaggagcagccaatcagatccctcctgtgtgtgtagatcaggtaacagaggtacgaggcttcagtgattctcagaaagaggagtacttcaggaagaggatcagtgatcagagcctggccaataaaatcatcacacacatgaagtcttcaagaagcctctacatcatgtgccacatcccagtcttctgctggatttcagccactgttctagagagaatgttgtgtgaagcagagagtggagagatccccaagactctgactcaaatgttcacacacttcctgatctttcagatcaaacacaaggaccaaaagtaccatcagaaatgtgaccctgatcctcagcagaccagagagagtatcatggcactgggaaaactggctttccagcagctggagaaaggaaacctgatcttctatgaggaagacctgagagagtgtggcattgatgtcagagaagtgtcagtgtattCAGGAGTGTGTActcaaatcttcagagaggagtttgggcttcacctggggaaggtgttcagctttgtacatctgagcaTTCAGGAGTTTCTTGCTGCTTTATATGTATTTCTCTCCTTCTTAAAGAGTactggatctttttttttcaagaagtCAAAAATGTCTGATTTCCTGAGAAGTGCGGtagacaaggccttacagagtgagaatggacacctggatcTTTTCCTCCGTTTCCtcctgggtctctcactggagtctaATCAGTCTCTCTTACAAGgtttaatgccacagacaggaagcagctctcacagcaaagAGGAAACAGTgaagtacatcaaggagaaggtCAGAGAGAACCtctctccagagaaatccatcaatctgttccactgtctgaatgaactgaatgatcattctctagtgcaggaagtccAAATTTATGTGAATGAAGGAGCATTTAGTCATCTCCATGGTGCCAGACTCTCTCCttctcagtggtcagctctggcgtttgtgttactgaactcagaacaggagctggctgagtttgatttgagtaaatatgacaaatcaGAAGAATGTCTTCAtaggctgctgccagtggtcaaagcatcCAGAAAAGCTGTGTGAGTGTTTTCATTCTGAATAGATTCgatttctatttaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308915 lncRNA downstream 12397 24382518 ~ 24383732 (-) False LOC113530517
TU308500 lncRNA downstream 79714 24302005 ~ 24316415 (-) False reps2
TU308533 lncRNA downstream 89459 24305229 ~ 24306670 (-) True G260581
TU308490 lncRNA downstream 170171 24213334 ~ 24225958 (-) True G260548
XR_004579699.1 lncRNA downstream 256023 24136489 ~ 24140106 (-) True LOC117599232
TU308927 lncRNA upstream 45842 24448558 ~ 24453499 (-) True G260833
TU308924 lncRNA upstream 47420 24450136 ~ 24453499 (-) False G260833
TU308936 lncRNA upstream 98413 24501129 ~ 24503863 (-) False tent5ab
XR_004579670.1 lncRNA upstream 196395 24599111 ~ 24600250 (-) True LOC117599219
TU308974 lncRNA upstream 213318 24616034 ~ 24618044 (-) True G260858
XM_034311957.1 mRNA downstream 9874 24374273 ~ 24386255 (-) True LOC113530517
XM_034311958.1 mRNA downstream 25449 24351895 ~ 24370680 (-) True LOC113530519
XM_034311584.1 mRNA downstream 55966 24323615 ~ 24340163 (-) False LOC113530540
XM_034311583.1 mRNA downstream 55969 24321672 ~ 24340160 (-) False LOC113530540
XM_034311960.1 mRNA upstream 20309 24423025 ~ 24429005 (-) True LOC113530518
XM_026920905.2 mRNA upstream 57811 24460527 ~ 24468085 (-) False LOC113530680
XM_026920904.2 mRNA upstream 57811 24460527 ~ 24467393 (-) True LOC113530680
XM_026920907.2 mRNA upstream 65380 24468096 ~ 24473922 (-) True LOC113530682
XM_026920906.2 mRNA upstream 74652 24477368 ~ 24486328 (-) True elovl4b
TU308180 other downstream 631966 23763674 ~ 23764163 (-) True G260310
XR_004579695.1 other downstream 1155783 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 1946702 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 2441524 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 3041432 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579755.1 other upstream 99017 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 102912 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 384974 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309105 other upstream 478242 24880958 ~ 24883145 (-) True G260947
TU309088 other upstream 581743 24984459 ~ 24990531 (-) False si:ch211-149b19.4

Expression Profile