Item | Value |
---|---|
RNA id | XM_034311984.1 |
length | 859 |
RNA type | mRNA |
GC content | 0.46 |
exon number | 7 |
gene id | ube2t |
representative | False |
Item | Value |
---|---|
chromosome id | NC_047610.1 |
NCBI id | CM018556.1 |
chromosome length | 25111544 |
location | 12395444 ~ 12400748 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
id | name | namespace |
---|---|---|
GO:0051865 | protein autoubiquitination | biological_process |
GO:0006513 | protein monoubiquitination | biological_process |
GO:0006281 | DNA repair | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0005524 | ATP binding | molecular_function |
GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
GO:0003682 | chromatin binding | molecular_function |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU300547 | lncRNA | downstream | 1854 | 12392363 ~ 12393653 (-) | True | G253843 |
TU300430 | lncRNA | downstream | 177763 | 12217424 ~ 12217744 (-) | True | G253749 |
XR_003403159.2 | lncRNA | downstream | 244562 | 12143633 ~ 12150945 (-) | True | LOC113530483 |
TU300415 | lncRNA | downstream | 244646 | 12143714 ~ 12150861 (-) | False | LOC113530483 |
TU300190 | lncRNA | downstream | 490821 | 11904277 ~ 11904686 (-) | True | G253538 |
XR_003403193.2 | lncRNA | upstream | 205793 | 12606541 ~ 12607682 (-) | True | LOC113530910 |
TU300710 | lncRNA | upstream | 260496 | 12661244 ~ 12709317 (-) | True | G253977 |
XR_004579658.1 | lncRNA | upstream | 291597 | 12692345 ~ 12714075 (-) | True | LOC117599211 |
TU300707 | lncRNA | upstream | 292871 | 12693619 ~ 12714080 (-) | False | LOC117599211 |
TU300797 | lncRNA | upstream | 407632 | 12808380 ~ 12808599 (-) | True | G254052 |
XM_026920136.2 | mRNA | downstream | 79155 | 12306153 ~ 12316352 (-) | True | commd7 |
XM_026920532.2 | mRNA | downstream | 109937 | 12187794 ~ 12285570 (-) | True | nol4lb |
XM_026920535.2 | mRNA | downstream | 111795 | 12187794 ~ 12283712 (-) | False | nol4lb |
XM_034311892.1 | mRNA | downstream | 112463 | 12187794 ~ 12283044 (-) | False | nol4lb |
XM_026920536.2 | mRNA | downstream | 209729 | 12168527 ~ 12185778 (-) | True | zgc:194282 |
XM_026921387.2 | mRNA | upstream | 717 | 12401465 ~ 12406721 (-) | False | zgc:194242 |
XM_026921388.2 | mRNA | upstream | 717 | 12401465 ~ 12406721 (-) | True | zgc:194242 |
XM_026921130.2 | mRNA | upstream | 11326 | 12412074 ~ 12415966 (-) | False | LOC113530803 |
XM_026921128.2 | mRNA | upstream | 11326 | 12412074 ~ 12415585 (-) | True | LOC113530803 |
XM_034311918.1 | mRNA | upstream | 11326 | 12412074 ~ 12415563 (-) | False | LOC113530803 |
TU300417 | other | downstream | 236147 | 12158772 ~ 12159360 (-) | False | ptk6b |
trnae-cuc_33 | other | downstream | 254334 | 12141102 ~ 12141173 (-) | True | trnae-cuc_33 |
XR_003403207.1 | other | downstream | 502505 | 11892927 ~ 11893002 (-) | True | LOC113530993 |
XR_003403206.1 | other | downstream | 503087 | 11892348 ~ 11892420 (-) | True | LOC113530992 |
TU300077 | other | downstream | 826977 | 11556887 ~ 11568530 (-) | False | avpr2ab |
XR_004579685.1 | other | upstream | 1728468 | 14129216 ~ 14150581 (-) | False | LOC113530423 |
XR_004579686.1 | other | upstream | 1728468 | 14129216 ~ 14150581 (-) | False | LOC113530423 |
XR_004579684.1 | other | upstream | 1728468 | 14129216 ~ 14150581 (-) | True | LOC113530423 |
XR_004579687.1 | other | upstream | 1728468 | 14129216 ~ 14146831 (-) | False | LOC113530423 |
TU301948 | other | upstream | 2298524 | 14699272 ~ 14704270 (-) | False | G255071 |