RNA id: XM_034312005.1


Basic Information

Item Value
RNA id XM_034312005.1
length 1700
RNA type mRNA
GC content 0.46
exon number 12
gene id lemd1
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11785870 ~ 11808702 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACAAATTGGCGCGAAAAATGTAAAAGCCGCTTTTCATGCTGCAGAGTCTCCGCCCTTAAAGACGAGTAAATACCAGAGCCTGGGGTGTCTGGTTTCCAGGGGCTTAAAAGAGCAGCAAGCCCACTTCAGTTCTCCTGCACCATTAGACAGAGTcagtgtatatgcatgtgtgtggtaGTATTTAAGGGCAAATAGTTTTCTAAGCTCTGCTATGCCGGTGTTTGTGGAAAATCCCACTCAGTTTTCTAAACAGCGCCTGAAGTCAGAGTTAATTTCGCATAGTGTGGAGGTACCGCCTGCAGACAGTGCAAAACAGCTTTATCTGGAGGTTTATATGAAGCATGTGGGGAATAAAAACAGTGCTGATTTCTCTAGTGATGAAGAGGAGCAGGTCCAAGATGGAAATgaagaggaagagagaggagaggattCAGACATGGTGGACCTGAGCTTACTGACTGATGATCAGTTAAAATGCAAACTGCTCCAGTATGGAGTCAAAGCTGGACCGATTGTAGCTAGCACTCGAGCGTTGTATGAGAGGAAGCTGCACAGGATGATGACCCAGCACTCGCAGCACAGTGTCAACAATAAAGATGCTGCTGGGAAATACTCCGATAGTGAGGAGGAGGAGTCTGgatcagaaCAACTTGGAAGTATGGGTGTCCCATACTGGCCAAGTGTGACACCTAGTACGGTGGGGCTGAACTATCAGAGCAAAGAAACATTTTATCCTCAGTGCTTTGTCCCCCCTGTGAGACAGGGCAAATATCAAGAGGGGTCATTGGAGAGCCTCCAGACCAGCTCCCTGTCCTTCAGCATCACACAGCTTGTGgaggagATTGAGAACAGGCTGAGTCCTCAGTCAAAGTcagcagagactgagagaagctATAGCCAGACACCAGTGGCAAGCAGGGCACAATGGCAGCTCAACAAAAGCACAACGAATGTGTCATTCTATCTGACCCCTGAGTGTTCACCTCTTCAGAAACAAACCACCACAATAAAACCAGCTATTGAAGCCGTGGCTGATGTTCTGATGGAGATGTTCCCAGACACTGCACTTACTCCAACTGGGATCACTGCCACCAAGAGACGATCTATAAAGGGGGCAGCAGGTCGTCCTGTGCAGTTCAAATACCCAGAAACCCTGCTGAGTCCTACCACACTGGAGAGACGGGAGATCCAGCAGCGTCTGGTTCCTCTGTGGGTGCAGATTGCCGTCTTCCTTTTGGTGGCTGCTCTCCTATACTTCATTTACATATCGATGGAAGAGCCGCTGGAGAATCCTTTCGGCGCATTGCTAAATGGCCTGAGTAAGGAGCCAAGCAGCGATGACCTTGCACTTGTCCCTAActctcaggacacacacacctgagacagGGTTTATTATGGATTGGACTTACTTGCATAGAATTTCATAGTAATAGCGGTTGCAGAATTCTCTCAGTTTAAGTCAAATACACCTAGATGTATATGGTTTGATCTGTTCTTATATTTACTTGTATAGGCTTTTACCTTTATGGAAGTTTTCTACTGTTCACTTAAGCAGAATCAGTCAAATGAACTGGTGAAGTGTTGGATGGAGAGCCACAGGGACCCATGTCTAACCCACAGGAGTACTGTACgttcagttgtttttattcCATTGTGCAATTATTgttgttgaataaataaatggatgaatatGTCCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299903 lncRNA upstream 1806 11782908 ~ 11784064 (+) True G253329
TU299869 lncRNA upstream 56578 11729040 ~ 11729292 (+) True G253301
TU299813 lncRNA upstream 152575 11594504 ~ 11633295 (+) False hsd17b10
TU299787 lncRNA upstream 278243 11506458 ~ 11507627 (+) False arhgap4b
TU299793 lncRNA upstream 306501 11470051 ~ 11479369 (+) False zgc:103759
TU299946 lncRNA downstream 83448 11892150 ~ 11896137 (+) False G253367
TU299948 lncRNA downstream 83448 11892150 ~ 11900364 (+) True G253367
TU299949 lncRNA downstream 83448 11892150 ~ 11900364 (+) False G253367
TU299950 lncRNA downstream 83448 11892150 ~ 11896137 (+) False G253367
TU300200 lncRNA downstream 130377 11939079 ~ 11941237 (+) True G253548
XM_026920168.2 mRNA upstream 18677 11761199 ~ 11767193 (+) True mfsd4ab
XM_034312012.1 mRNA upstream 27995 11752133 ~ 11757875 (+) False nucks1b
XM_026921139.2 mRNA upstream 27995 11752134 ~ 11757875 (+) True nucks1b
XM_026921033.2 mRNA upstream 71060 11700784 ~ 11714810 (+) True tafa1a
XM_034312161.1 mRNA upstream 71060 11700784 ~ 11714810 (+) False tafa1a
XM_034311550.1 mRNA downstream 289 11808991 ~ 11821760 (+) False pm20d1.2
XM_034311551.1 mRNA downstream 290 11808992 ~ 11821760 (+) False pm20d1.2
XM_026921152.2 mRNA downstream 291 11808993 ~ 11821760 (+) True pm20d1.2
XM_026920869.2 mRNA downstream 91696 11900398 ~ 11907918 (+) True tfip11
XM_026921106.2 mRNA downstream 212954 12021656 ~ 12023438 (+) True bhlhe23
XR_003403199.2 other upstream 370421 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other upstream 370421 11400036 ~ 11415449 (+) False wu:fa11c10
trnaf-gaa_28 other upstream 518187 11267611 ~ 11267683 (+) True trnaf-gaa_28
trnah-gug_14 other upstream 525952 11259847 ~ 11259918 (+) True trnah-gug_14
TU299671 other upstream 548508 11231429 ~ 11237362 (+) True oard1
TU299947 other downstream 83448 11892150 ~ 11900364 (+) False G253367
XR_003403157.2 other downstream 304920 12113622 ~ 12121372 (+) True trim101
TU300294 other downstream 332785 12141487 ~ 12143527 (+) False ppdpfb
XR_004579730.1 other downstream 558041 12366743 ~ 12384574 (+) False LOC113530266
XR_003403145.2 other downstream 1028349 12837051 ~ 12850995 (+) False rbbp8l

Expression Profile