RNA id: XM_034312013.1


Basic Information

Item Value
RNA id XM_034312013.1
length 1157
RNA type mRNA
GC content 0.56
exon number 8
gene id LOC117599273
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25069915 ~ 25072941 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAGCGGAAGTGACGCCATCGCGTTTGTTTCGGAAGCGAAAACGGCGTCAGATTTAAACGGACTACATTTTCCAatttcAGTGGACATTAGCAGGACACTGGGCTCATGTCTGAGAGCCGGCAGACGCAGCGAGGTGACGAGCGAGCACGTGACAGGGCGAGACGCAGGGACAGTGGACAGAGTAAAGCGTCTCTGCGTGCGTCTCACCCTCGCACCGTGAGCCGCGCCGCTCAGGGGGATCTGCAGGAGATCAACAGGCCGAGAGAGGTGATTGGTCAGCTGCAGACTGAAGGGCGGGGCGTTGACAAAGAGGAGGAGCTGAGATGGAGGATCAACCAGCTGGAGAAGGACAAGCTCGAGCTCAGCTCCAAGTACAATCAGGAGgtgtcgGGTTACGAGGCTCAGCTCACTCGCTGTCGTGCTCTGCTGGAGAAAGGAGAAGCTCAGAGACAGACACTCGAGTACGAACTCGCTGTGATGAAAAGAGACACAGCTGCTCAGAAAAGTCTCTCTGAGGACAAGATGGCCAGCCTGATCACACACAACCAGCAGCTGGaggGCCTCAATGCGGAGCTGCGTCAGAGGGCCTCTGATCTACAGAGAGCTTTGGAGATCACGCAGCAAGCTCGGTATGATGATGAGAAGAGCCTCCAGGCAGAGCTGCGTGAGAGGGACCATCTGATTCACAGCAttagcacagagagagagctgctgcAGGAGGAGAACAGACGCCTGGACTCACTGCTGCAggagcaGAAAGACACACTGCAGGAGCTGAAGGACAGGATGGACAGtgtgcagagagacagagagcgagacgCTGAGAAGCTCAAAGTGAGGACGGCTGAGCTGAAGAAGAGTATGGAGAGTGAGGAGATGATGAAGAAGGAGGTGGAGacagCCGTACAGAGAGTAAAGGCTctggaggagtgtgtggagtCAGAGAGAGCTGCTCACCTGGAGTTCAAGGTCAGCGCTGAGGTCATTCAGctgcggCTCAGGGATGTGGAAGCGGCTCTGTCAGTAGAGAAGAGGAATCAGGCTGAGGCTGCGTCCAGTCTGGAGCTGCTCAAACACAGATCTGGAGAAGtggagagagcacacacacgcGAGAGAGAGCGCGCtgacaacacacaacacacactgacactgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308864 lncRNA upstream 9683 25055148 ~ 25060232 (+) True G260813
TU308862 lncRNA upstream 16396 25047551 ~ 25053519 (+) True G260812
TU308821 lncRNA upstream 40954 24970399 ~ 25028961 (+) False G260779
TU308820 lncRNA upstream 42122 24970399 ~ 25027793 (+) True G260779
TU308838 lncRNA upstream 52976 25015220 ~ 25016939 (+) True G260796
XM_026911882.2 mRNA upstream 23769 25043358 ~ 25046146 (+) True hmgb2b
XM_034312226.1 mRNA upstream 56644 25011096 ~ 25013271 (+) True LOC117599307
XM_034311594.1 mRNA upstream 62098 24999945 ~ 25007817 (+) True LOC113525303
XM_026911786.2 mRNA upstream 62098 25002010 ~ 25007817 (+) False LOC113525303
XM_034312118.1 mRNA upstream 188275 24870669 ~ 24881640 (+) True zgc:56304
XR_004579660.1 other upstream 435370 24624937 ~ 24634545 (+) False ddx58
TU308384 other upstream 800648 24268577 ~ 24269267 (+) True G260483
TU308306 other upstream 1037191 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 1680601 23387538 ~ 23389314 (+) True G259993
TU307771 other upstream 1686262 23371747 ~ 23383653 (+) False LOC117599309

Expression Profile