RNA id: XM_034312021.1


Basic Information

Item Value
RNA id XM_034312021.1
length 1640
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC117599277
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21494416 ~ 21496055 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCCAGCAACCACTTCTGACAGTCGTCTTGGAGCTGTTGTACAAAGAGGAATGTGCTTCCGACCTCACGGAGGGTCAGGGAGCGAAACCTCTGGCGATGTTGCTCTGATTGCGAGACGGCTTTCTTGAGCCTTTCAGATTCCTCTCTGTGCATGAAGCTCTGGAGCCTGTGTTGGGTCTCTGCCTGGGCTTGTATCAGGACCTCCAGACGCTGCATAATCTCAGTGTGGTGTGAGGACTCCATTGTGGTGAACGTAGAGGTGCTGGAGAGAACGAGAGAGGTGCTGGATTTTTAGAACGAAACTTCGAGCTCTGTGTTTTCACCCAGCACTTTGTACCAAAAGAAAATTCAGCAGGCAAACGAGTATAATCGAGGTGAAGGAGGCCACGATTTGAAGATAAGTCGGGAGAAGCTTCTCTTTCATTGGTGTGATCCCTAACCCGCTTTATCTGAGGCTATATAACTTGTGAATCTTCTCCGGTACTCAGTGGCGCAGCTGGTGAACTAACGAACGTGGAAAACAGCAACGACtttggaagagaaatgattcgAGACCTCTGAACAAATTTCCACTGGAAATCTGTCTTATTCGCTCGCGCCTCGctctgaattgaattgaattgaattgatttaaaCTGATTTCAAATCGTGGCCTCCGGCGCCACGACGATATAAACAGCTCCTTCTCCGCGATTATACTCATTTGCCTGCTGAATTTTCTTTTGGTACAAAGTGCTGGGTGAAAACACAGAGCTCAAAGTTTCGTTCTAAAAATCcagcacctctctctctctctacgtGCTTACGTTCCCAACTGAGTGCAACACAATACACCACAATGGAGCTCTCACACCACACTGAGATTATGCAGCTAGAGGAATCTGAAGCTGTCAAGAGAGCCACCTCACAGTTGTCAGAGCAACATCGCCAGATGTTTCGCTCCTTGACCCTCAGTGAGGTCGGCGACCCGTTTACATTTGTACAACAGCTCCAATTCCACTGTCAGAAGTGGTTGCTGACTGTGGATTGGGACCATAGCAGGATTGTGGAGCAGTTGGTAATAGAGCAGTTTATCAGCAAGCTTCCAGAAGAGACTGCCCACTGGGTTCGTCATCACCAACCAGAAACACCAAACGAGGCCATTCAGTTGGCAAAGAACCACCTGGagtctctcgctgtctctcccACAGTGGCTGAAGGCGAGTTGTGTGCATGGGGATTTTCACAAATATCCACTGTGCCAGTCATGATCAGTTTCTGGGGACAAAACCATGTCCAGGCAGTGGTTAGTCCTGCCATAAACCATCTGCTGATTTTGGATACAAAATTGGCCTGATTTCCAAGAACTTTTTGTAGAGTTTTTGTAGTGGATGGATTTCTCAATTTACACTTCATGTCTTTGATCTGTACTACTGTGATTCGCCAGCTTCGATGACCACACTTGATATCACAGCAttatctgtaatctgtaattgACTATGATTTTCTTGTGTGCAGGCTTTGCCTATTTTGTTATTAAGTGGTCTGTATTTTGTTGGTTCttcttattaataaaacaaaatattaatatgtgatAGATTTCTGAAATCTTCATGGTGATGTCTATATGTAAAGCAAagtttttatatcatattctaGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306289 lncRNA downstream 119313 21374898 ~ 21375103 (-) True G258700
TU306265 lncRNA downstream 139729 21354439 ~ 21354687 (-) True trnaq-uug_7
TU306206 lncRNA downstream 253356 21238036 ~ 21241060 (-) True G258626
TU306176 lncRNA downstream 326818 21153906 ~ 21167598 (-) True G258596
TU305999 lncRNA downstream 518155 20973397 ~ 20976261 (-) True camk2n1b
TU306366 lncRNA upstream 18592 21514647 ~ 21555460 (-) True G258771
XR_004579674.1 lncRNA upstream 87660 21583715 ~ 21586639 (-) True LOC117599221
XR_004579673.1 lncRNA upstream 87660 21583715 ~ 21585880 (-) False LOC117599221
XR_003403152.2 lncRNA upstream 92374 21588429 ~ 21599129 (-) True LOC113530427
TU306559 lncRNA upstream 253736 21749791 ~ 21750001 (-) True G258940
XM_034311891.1 mRNA downstream 19574 21472718 ~ 21474842 (-) True LOC117599258
XM_026920132.2 mRNA downstream 189788 21297056 ~ 21304628 (-) True ednrab
XM_026921046.2 mRNA downstream 199643 21287614 ~ 21294773 (-) True LOC113530756
XM_034312084.1 mRNA downstream 221405 21259533 ~ 21273011 (-) False wu:fy63c09
XM_026920092.2 mRNA upstream 132077 21628132 ~ 21671352 (-) True LOC113530264
XM_026920093.2 mRNA upstream 135338 21631393 ~ 21671352 (-) False LOC113530264
XM_026920917.2 mRNA upstream 333210 21829265 ~ 21835197 (-) True ftr92
XM_034312131.1 mRNA upstream 362157 21858212 ~ 21883246 (-) True gpsm2l
XM_026920925.2 mRNA upstream 388610 21884665 ~ 21921592 (-) True ghrhrl
trnaq-uug_7 other downstream 139719 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 324718 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 626458 20830828 ~ 20867958 (-) False LOC117599256
TU305550 other downstream 1222509 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 1374467 20110463 ~ 20119949 (-) False mlh3
XR_004579748.1 other upstream 433120 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 949975 22446030 ~ 22449427 (-) True G259306
XR_004579695.1 other upstream 1702527 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 2267619 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 3005678 24501733 ~ 24508467 (-) False tent5ab

Expression Profile