RNA id: XM_034312030.1


Basic Information

Item Value
RNA id XM_034312030.1
length 5515
RNA type mRNA
GC content 0.46
exon number 20
gene id bcas1
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18308254 ~ 18339653 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttttttttttttctgccaacgCTGATATCAAGATGGGGAATAGGCAGTCTGTTACAATAACGCATGAAAAGGTGGACAGTGATGGAAAACAAGTTAAAAAAGATGAAGCAAATGGGCATGCGATGTCTGGTTTGGATTTGACTGATGCTGTAACCTGTGAGGCATCAGTGCAGCAGAACACTGAACCTCCACCTGCGACTTTCACAATTAATGTCAAGCCTACATCAGCGTCAGTAGAAGTTAATGGCACCCAAGCAAAAGCTCCAGCTGTGTCTGTGGAAGCAGATGGTAACCAAGTCAGTGCTACAACTGTATCAGCTGAACAAAAAGTTCCAGCAGAGTCCAGTACACCAGCCAAAGACGCACCTAAACAAGCTGAGACTCCCACCGTGTTCAGTAAGATGTTCAAGAAGAAGACCATGCTTGTTTTACCTGCATCTGAGGCTAATGTGGCAGCTGAAGTACAGATCGTCCCTGCAGTAGAGACCGAGAGCCAGAAGTCTAAGCCAACACCAGCGTCAGTAGAAGTTAATGGCACCCAAGCAAAAGCTCCAGCTGTGTCTGTGGAAGCAGATGGTGTCCAAGTCAGTGCTACAACTGTATCAGCTGAACAAAAAGTTCCAGCAGAGTCCAGCACACCAGCCAAAGACGCACCTAAACAAGCTGAGACTCCCACCGTGTTCAGTAAGATGTTCAAGAAGAAGACCATGCTTGTTTTACCTGCATCTGAGGCTAATGTGGCAGCTGAAGTACAGATCGTCCCTGCAGTAGAGACCGAGAGCCAGAAGTCTAAGCCAGCACCAGCATCAGTAGAAGCTAATGGCACCCAAGCAAAAGCTCCAGCTGTGTCTGTGGAAGCAGATGGTATCCAAGTCAGTGATACAACTGTATCAGCTGAACAAAAACTTCCAGCAGAGTCCAGTACACCAGCCAAAGACACACCTAAACAAGCTGAGACTCCCACCGTGTTCAGTAAGATGTTCAAGAAGAAGACCATGCTTGTTTTACCTGCATCTGAGGCTAATGTGGCAGCTGAAGTACAGATCGTCCCTGCAGTAGAGACCGAGAGCCAGAAGTCTAAGCCATCATCAGCGTCAGTAGAAGTTAATGGCACCCAAGCAAAAGCTCCAGCTGTGTCTGTGGAAGCAGATGGTGTCCAAGTCAGTGCTACAACTGTATCAGCTGAACAAAAAGTTCCAGCAGAGTCCAGTACACCAGCCAAAGACGCACCTAAACAAGCTGAGACTCCCACCGTGTTCAGTAAGATGTTCAAGAAGAAGACTGGGCTTGTTTTACCTGCATCTGAGGCTAATGTGGCAGCTGAAGTACAGATCGTCCCTGCAGTAGAGACCGAGAGCCAAAAGTCTAAGCCAGCACCAGCGTCAGTAGAAGCTAATGGCACCCAAGCAAAAGCTCCAGCTGTGTCTGTGGAAGCAGATGGTATCCAAGTCAGTGCTACAACTGTATCAGCTGAACAAAAAGTTCCAGCAGAGTCCAGTACACCAGCCAAAGACACACCTAAACAAGCTGAGACTCCCACCGTGTTCAGTAAGATGTTCAAGAAGAAGACCATGCTTGTTTTACCTGCATCTGAGGCTAATGTGGCAGCTGAAGTACAGATCGTCCCTGCAGTAGAGACCGAGAGCCAGAAGTCTAAGCCATCATCAGCGTCAGTAGAAGTTAATGGCACCCAAGCAAAAGCTCCAGCTGTGTCTGTGGAAGCAGATGGTGTCCAAGTCAGTGCTACAACTGTATCAGCTGAACAAAAAGTTCCAGCAGAGTCCAGTACACCAGCCAAAGACGCACCTAAACAAGCTGAGACTCCCACCGTGTTCAGTAAGATGTTCAAGAAGAAGACTGGGCTTGTTTTACCTGCATCTGAGGCTAATGTGGCAGCTGAAGTACAGATCGTCCCTGCAGTAGAGACCGAGAGCCAAAAGTCTAAGCCAGCACCAGCGTCAGTAGAAGTTAATGGCACCCAAGCAAAAGCTCCAGCTGTGTCTGTGGAAGCAGATGGTATCCAAGTCAGTGCTACAACTGTATCAGCTGAACAAAAAGTTCCAGCAGAGTCCAGTACACCAGCCAAAGACACACCTAAACAAGCTGAGACTCCCACCGTGTTCAGTAAGATGTTCAAGAAGAAGACCATGCTTGTTTTACCTGCATCTGAGGCTAATGTGGCAGCTGAAGTACAGATCGTCCCTGCAGTAGAGACCGAGAGCCAGAAGTCTAAGCCTTCATCAGCATCAGTAGAAGTTAATGGCACCCAAGCAAAAGCTCCAGCTGTGTCTGTGGAAGCAGATGGTATCCAAGTCAGTGCTACAACTGTATCAGCTGAACAAAAAGTTCCAGCAGAGTCCAGCACACCAGCCAAAGACACACCTAAACAAGCTGAGACTCCCACCGTGTTCAGTAAGATGTTCAAGAAGAAGACCATGCTTGTTTTACCTGCATCTGAGGCTAATGTGGCAGCTGAAGTACAGATCGTCCCTGCAGTAGAGACCGAGAGCCAGAAGTCTAAGCCTTCATCAGCATCAGTAGAAGTTAATGGCACCCAAGCAAAAGCTCCAGCTGTGTCTGTGGAAGCAGATGGTATCCAAGTCAGTGCTACAACTGTATCAGCTGAACAAAAAGTTCCAGCAGAATCCAGTACACCAGCCAAAGACGCACCTAAACAAGCTGAGACTCCCACCGTGTTCAGTAAGATGTTCAAGAAGAAGACCATGCTTGTTTTACCTGCATCTGAGGCTAATGTGGCAGCTGAAGTACAGATCGTCCCTGCAGTAGAGACCGAGAGCCAGAAGTCTGACACAGATACACAGGACATAGAAGAAAACATAGAAGAAGGTGATGATGTATCTCTGCAGTTGTCGCTTGACCCTGATTATGAAATTATGGAAGCTGCAGAGAGGTTGATTCTGCAGCTAATTGCCTCCACTCAGTCTGCAGTCATGTCCGAAGATATTACTCAGAACACCTCAGGTGATAATGCTGGATCGGTGGAAGGGGAGGATGCGAAGAATGAGACTGATACTCCTGAGTGCATTGAAGATGAAACCTGGGTGCTTATTGAAGATCCAGTGTGTGCAGGTGATTCAGCAGAATACACGCAGCTGCTCTGTCGGTTAAAGTCCGTGTGCATTGAGACTGTGGAAGACTTTTCCTATAATCCTGTCAGTGTGAATGTCCGTACTAAGAGAAGATCCATTCAGATTACAATTGATGTTTGCTCGAGCATGGACAATGAGACAAAATGTGGGGATGAGGCCAGTTGTGACATGGACATTGTAAATGTCAAATCAACAGCAGAGGAAGAACAGCTCACCACtgaaatcccagaagatcacaATGTGTGGAGTAGCGAGCCTACAGACATAAAGGCAAGTACACAGGCTGAGAAAGAGCCACAGGGTGAAGCTCTCAAATCCAGCACCACTGAGGTCACGCAAGACAGCACCCAAACTGAGCAGAGCAGCACCGAGGAAAAGTCAGTTATGAACTTTTTCAAAACACTtGTGACTTCAACCAAAACGACAAAAGAAGCGACGGCTAGTCCTGATGTCTCAAAAGAACAGTCACAGAAAGAAACTCCACCAGCTCCAGCTGCAAATGTACAGGAAGCATCAAAGGTCCCCCCTCCTCCACCGCCAGCACCACCCAAGATGGAGAGTAAAGCAGAGCCAGCTGTAAAGAAAGAGGAGGCCCCACCTGTAGAAGTAGCAGCCGCCACAGCCAAAGAACCAGAAACCCCCAGCAAGGCCAAAACTAAAGACAGCCCATTCGGCAAACTCTTCCGTACAAAGGTAGATGCATCCAAGACCAGCACCCTTGAGGCCAGCGCCAAATCCGAACCTCCTCCAGCACCCAAaccagaagaaaagaaagcagagaAGAAGCCATCACCTTTTGCCAACTTGCTCAAACCAAAGGTACTGCTAGGCCAAGTGAGCTCTAAGATCCATGCAGCTGCATCGAGCGCCGCAGCCGGCATCTCCCTTGGTGCTGGAGGAGCGgCTACAGAGTCCAAGAAGGAAGCCCCTGCAGCCCCCACCGCACCCGCAGAGGCTGCCCCAAGCACCAAGACCAAAGAAGAGCCCAAAGCAGCTGcggctgctgctcctgctgccgCCTCTGCAGACAACAAGTCGGTGGGGAGTACAGATAATTCTTCACCCAGCACCTCACGCAAACTAGAGAAGAGGAACTCCATCCACCTGTTCTTTAAAAACCTGGGTCAGAAACGCCATTCTGACGCCGGAGTGCAAACGGAGCCCGCGGCACCGGAGAAGGCCAAATAAAAACCTTGCTTTGGTTTCATCATCTGCACAGAAAACACGCTTTGCTTGTACATAGGTATCCTTATCTGAATGTCCTGACCAGAGACCAGGGATTAATTCCTGTTTAATCTCCACTACTGAGGTGAACTGAGAACTAAAGTATCATAAAACTGGCCATTCCAATGATTCATTACCATTGCCAAGACTTCTTGGGTTGACCTTAAATACTATCAAAGTCACTTAGAAAAGGTTGGTTCTTTAAAGGTTTGCAAGATGTATGTTGAAATGCAATAGAAAGGCTTAAGGCTTTGCAAGTTTTGCAAGACTTTTAAAGAAAGTGTGATGGAGAAGAGCTGAAAAAGGGATTATGCAACAGTACGATAACATGCTGTTCCTCTTAAACGGGAACATTAATGTAAAAGTCAACCCTGTCTATATAGTCACACTTAACTCCTCAATATGGTCTTTATCACATGCAGGATGTATTACAACCACTGTCTTGTTTCcagcttctgtgttttttttaaagatggaaCATCTGATTTTTTGCACATGAGTGCACAATAATCATTCATACGGCTGTAAAAACAATCCGCAAAGACTTACTCATTCCATTATGGCGTCTCATCAAAACCTCCAATGTCACTCACTTGTTGTTTGGTGGTAACAATACTTAAAATGTTATCTTTTAAAACATTCAGACCCATTGCCCATTGCTAGTATGTCGTGCTAACGCATATTTTACTAACATATTATCATGTCACACTATCGCATACAGGCTTAATTATTGAATAGGTTAGTTATTAGCTTTTCAAAATGggcactccttttttttttgtactactGAAAACATATGCTATCTGTAACCAAATCTTTACTAACTATATGGAATATATTGAAATTAGCACACTGTtcatatggggaaaaaaatccatctggtttctcttactctctcttacTGAATTCTCAGTAGCTTTTGGTGGATCCAGTTTAATTGCTTTCTGTGAAATGGTATTGAGTATGAGAATTTCTGTCTGCTCTTACTGCACATTTAAAGAGAAACTTTCCCAATTTTACATGttctgaattttaattttatttctgaatttgaGAGACACAgacttgcattattattatttttttgcttgtaaTCAACTAATgtcaaaaaatgaaatcttcTGTCTCTGTAATTGTAATTATGCAGTCtttgttaataaaatgtaagGGTACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304027 lncRNA downstream 22163 18285815 ~ 18286091 (-) False znf217
TU303854 lncRNA downstream 422675 17884243 ~ 17885579 (-) False kcng1
TU303780 lncRNA downstream 517347 17790641 ~ 17790907 (-) True G256689
TU303706 lncRNA downstream 574205 17733806 ~ 17734049 (-) True G256623
TU303705 lncRNA downstream 575791 17732097 ~ 17732463 (-) True G256622
TU304084 lncRNA upstream 10015 18348843 ~ 18349692 (-) True G256929
TU304576 lncRNA upstream 314265 18653093 ~ 18653315 (-) True G257322
TU304681 lncRNA upstream 470235 18809063 ~ 18860788 (-) True LOC113530357
TU304682 lncRNA upstream 470235 18809063 ~ 18852217 (-) False LOC113530357
TU304683 lncRNA upstream 470235 18809063 ~ 18863122 (-) False LOC113530357
XM_026921421.2 mRNA downstream 7567 18285486 ~ 18300687 (-) False znf217
XM_034312078.1 mRNA downstream 7567 18285486 ~ 18300687 (-) True znf217
XM_026921422.2 mRNA downstream 7567 18285486 ~ 18300687 (-) False znf217
XM_026921424.2 mRNA downstream 7851 18285486 ~ 18300403 (-) False znf217
XM_034312079.1 mRNA downstream 8542 18285486 ~ 18299712 (-) False znf217
XM_026920121.2 mRNA upstream 86537 18425365 ~ 18434986 (-) True cbln4
XM_026920120.2 mRNA upstream 102047 18440875 ~ 18477799 (-) True LOC113530281
XM_026920075.2 mRNA upstream 161353 18500181 ~ 18501811 (-) True irx7
XM_026921196.2 mRNA upstream 170320 18509148 ~ 18531252 (-) False LOC113530839
XM_026921195.2 mRNA upstream 170320 18509148 ~ 18531252 (-) True LOC113530839
XR_004579746.1 other downstream 7567 18285486 ~ 18300687 (-) False znf217
TU303855 other downstream 394977 17893081 ~ 17913277 (-) False kcng1
XR_004579680.1 other downstream 612656 17676565 ~ 17695598 (-) True LOC117599224
XR_004579669.1 other downstream 1476995 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_003403156.2 other downstream 1613224 16647823 ~ 16695030 (-) False fam50a
TU304189 other upstream 170327 18509155 ~ 18513257 (-) False LOC113530839
XR_004579689.1 other upstream 599082 18937910 ~ 19064582 (-) False lrp1ab
trnak-uuu_17 other upstream 789636 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579690.1 other upstream 1031859 19370687 ~ 19387041 (-) False LOC113530570
TU305224 other upstream 1276699 19615527 ~ 19621560 (-) False magi3a

Expression Profile