RNA id: XM_034312057.1


Basic Information

Item Value
RNA id XM_034312057.1
length 4593
RNA type mRNA
GC content 0.43
exon number 26
gene id chl1a
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14278094 ~ 14322302 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGATAAAAGTCTGAGGACTTACATCGTAGTAGTTATCTGATCCATACTTAAGATAACACAACGAAATGTTGTCACAGTTCAAGTAAGCTGAAATTCCAGGAGAACCATTCTGTAAAACAGATCTCTTTTCCCTAAAAGACTGTGAAGTGTTTTGACTGAGAAGTTGGTGGGAATCAGTGCCCACATCAGGTTGATGGGATGAAGGGACTAAGGGACTTTGATGCTGGGCTCCTCTTCACCTTATTTTCTATTGCCTTTAGCCTAGATGTACCTTCTGAGGtggagCAGCCACCAACAATCACAGCTCAGTCTGTAAGATCTGTTGTTGCCGTGGCATTTGATGATAACTTCACTTTGACATGTGAAGCTACAGGGAATCCAAAACCAGTGTTTTACTGGACTAAAAATGGCCTGAACTTTAACCCACGTAGTGACTCAAGACTCAAAAACTTTGAAAACAGTGGAACTTTTGTTATTCCAAGCAACAAATACCTTGCAGAATATCAGGGTAAATACAGATGCTATGCATCCAATAAAATGGGAGTAGCAATGTCAGAAGAAACCCATTTCATTGTACCTACTTCACCAAAGTTTCCAAAAGAAAGTATAGAGCCAGCAGTGGTTAAAGAGGGCGATCCAGTGGTCCTGGAATGTAACCCACCAAAAGGCATTCCACCTCGCCTTCTCTACTGGATGACTATTGGTCTTCAACACATTGAACAGGATGAGCGAGTATCCATGGGCTTGAATGGGAACCTATACTTTTCAAACGTGTTAGAAAAAGACAGCCGTAGTGACTACTGCTGTTTTGCTTCTTTTCCAAGGATTCGCACCATCGTCCAGAAAACTGCCATGGCTATTGTGGTCATGTCCTCAAACTCAACTGGTGAAACAGATGTCAAAATTTCGGACAGAAAGCCGAATATTCTGGTGCCCTCTGGTGATCTGTCCCAGACATATCTGGTGCAAGGACAGGATCTCGAGATTGAGTGTATTGCAGAGGGATTCCCCACACCAATAATAGAATGGACCAAAATTGGAGGGAAGTTGCCAAAACGCACCAACATCAAGAACCATGGAAAATGGTTGATTATAACAAACGTCACGGAGGAAGACAGTGGAAAATATATGTGCAAGGCAAAGAATTCTGCTGGTGAAACAGTTCATTTCTTCGACATTACAGTAGAAGAGCCACCACACTGGGTGCAAGAGCCAATAAAAAGTCAAGTAGTGGCAATTGGCTCAGAGGTACACATAAAATGCCATGCTTCAGGAAAGCCACCACCCACAATCACCTGGATGAGGAATGGTGAACCGCTCCGAGcaTTCTCCTCATCCCATATCAGAGTGCTACATGACACAGTAATCCTTTACAGAGCCCAACAAAATAACAGTGCAGTTTATCAGTGTGAGGCCTCCAACAAACATGGCACTTTACTGAGCAATACCAACATCATAGTTATGAATCTTCCTCCTTTGATCCTGACACAGAATTCTGTAAAGTACGGTGCTGTGtgtgggaaaaatgtcatgatGGACTGCAAAGTGTTTAGTTCTCCACCTGCTGATATCCACTGGAGAAAAGAAGGCCTTGAAGGTTCTGTGGTAGGAGAGCGATTCTTTCTCCATAAAAATGGCTCCCTTCAGATTCACACAACTGAGGTGGAAGACACAGGAAAATATACTTGTTTTGTTAACAACTCAGAGGGCAACTCCAGCATTAATGCAAAACTACATATAAAAGACCCAACCAAAATCGTGACTCCTCCGCAAGATAGAAAGATCAAGAGAGGGAGCATGGAAGAGCTTCAGTGCAAGGCGCAGTATGATCAGTCATTCACTGATGAGCTGAAAATTCTCTGGCAGAAGGATGGGAAAGATATAGATTCCAATTACATTGAGGATTCAAGATTCTACATTGATGTGGGAATACTGCAGATCAACAATGTGAGCCACAGAGATGAAGGACTATACACATGTATTGCTAGAACATCCCTCGACCAAGATACAGCATCTGCATATGTAACTGTGCTAGATGTCCCTGACCCTCCAGTAAACTTAACATTATCAGATCTGAGAGATCGTAGTGTGAAGCTTCACTGGATGCCTACCAAGGACCATAACAGCCACATAACAGAGTACATCATCGAATTTGAGGAGGACCACTGGGAGCCAGGCAAGTGGAGGCCACTGCTGCGAGTATCTGGCCACCAGAACTCTGCTCCTGTCTCATTACATGGACATATTAACTACCAGTTCAGAGTCAGTGCTGTCAATGGCATTGGAAGAGGTCATCCCAGCAAACCCTCTGAGAGATATAAAACTCCTCCTGCTGCCCCAGATAGGAAcccagaaaacataaagtttgAGGGTCATTCGCCTCATCAGATGGACATTACTTGGGAGCCTTTGAAGCCTATTGAACACAATGGACCTGGTCTAGAGTACAAGCTTAGCTACAGACAGATGGGTGTTGAGGAAATCTGGACAGAGAAGATGGTGAAGAGGCATTCCTTTGTTGTGAAAGGCACCCCGACATTTGTCCCTTATGAGGTTAAGATCCAGGCCCACAATAATTATGGTTGGGCAGTGGAGCCCAGTGTGGTGATTGGATATTCTGGAGAAGACTTGCCAGTTGCAGCTCCTGAGGATGTGAATGTAGAGGTGTTGAACTCCACGCTGCTGCGGGTCAGCTGGTCTCCTGTCCAACAGACCCAGCTCAGGGGCCATCTTGAAGGCTACAGTgtgCATTGGTGGAGAACACAAAGCCTGCTGACTTCTATAGAAGTTCCTGCTGAGAAGCAGTTTCTGATCCTCCCAGGGAATCAGAGTCACACCATAGTGCCTGGGCTGAAGCCATTCTCCCAATACCGTCTCACTGTAAATGTCTTTAACAGGAAGGGCAATGGTCCCAGCAGCAGGCCGCTCACCTTCACAACACCGCAGGGAGTTCCTGAAAGCCCCCCTATACTCAGAGCCACAAACCCTCAGGATAACTCCATCACACTGGTGTGGGCACCACCACTTGAGGCCAATGGTGTTCTCACAGGATACAAGCTGCAGTACCAGATATTCAATGATACACTGGATGTTGGTGAAGCATACGGAGTAAACATCAGTGGACCAGACACTACACATTGGGTTCTACATGATCTGGAGACAGCCAGCTACTACCAGTTCTATCTGAGTGCTTGTACACTTGTGGGCTGTGGACCAGCTATCAGTGAAGGGGCTTCCACAGCTTCTGGAGCACGTGCAGCAGGTGTACATGAGAGAATTTCATCTAAAAGCTGGTTCATTGGAATCATGTGTGCTGTGGCATTGCTCACTCTGGTAGTTCTAATTGCCTGCTTTGTGACCATGAACAAAGGTGGAAAGTATTCAGTGAACGAGGCGGAAGAAGTGAGATCACATATGAACTCTAAAGGCATGAATGATGAGACTTCCTGTGAATACAGTGATAAAAAGCCTCTGAAGAGCAGCCACCCTACACTAGTGGATGACATCAGAGAAGACAGCAGCAGCATGGACAGCTCACTTGACTGCGGGAATGAGGACTGCGAGTTCAGGGAGGACGGATCTTTCATTGGTGAATATGCTGGATACAAATGAAGGCTATCCATGGAGTTGACAGTTTGAGATGCTGTTTCTACTTTTAGACTATTAAATCTATGAGTGAAAGgctgtgtttaatttaaagATGCAGATGGATATTAAgcatctgagtgtgtgtgaatggtcaCTTCCTTAAAGTGAAGTAAACATTGCGAAACACCAGCTTAATGTCATATGACAAACTAAGCTTCTTCTTCACTTATAAACTAACTGTGCATCAATGTTCAACAACTGGGTGGATTAgacactttcttttttcagaaCACAGTCAGTTGTtaatgaaaatcatttttattaaaaaaataaaaaaaaactggccatGGCCTCTCACTAACTTGATCATGTCATGACAGCACATTTTTTGTTAGATGCCATGGATATGGTATGCATGGGCACAAAAAGTCCTGTCAAAAAGTTATAATGAGGTATGGATCCTAGGAGTAAATGGGTTTCCTTTGATGTCGATGCAATAGATTAACATAATTATTTCTAATTCTTACataaatctgaaaatctgacacatttctgtttagCAATGTACTTTATTAAAATCGACATTTACACTGccagtggggggaaaaaaaagcagtgcaAATGTCGATTTCAATCGAGTACAttgaaaagtttaaaataaagtgaTGACCCTTACTTTCGTTCTTGCACGGCAGTATTTTCTTATTCACATACATTTTGCATGCAGATACACATTGGTGCAGTGTGGAGATCATTTTTAAAGAGTATATAATTCCCGAGAGATTATTGTCATTCCAGGAGCATCCATTCCTGTCCAAAACACGAGACTGTCATTAAAAACGATCTTTAATACATGCTTGGCGCTTATCTTGTTCTGCAGTTTATGCCTACCTCTATCTTGTGTCTTAAACTATCTTTCTGTGTTTTACTGTACATAATGTAtgtagttttttcttttgttgtcagtgttttgtttatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301364 lncRNA downstream 577689 13700009 ~ 13700405 (-) True G254567
TU301398 lncRNA downstream 581474 13692797 ~ 13696620 (-) True G254600
TU301397 lncRNA downstream 612621 13664893 ~ 13665473 (-) True G254599
TU301384 lncRNA downstream 663431 13614428 ~ 13614663 (-) True G254587
TU301365 lncRNA downstream 687124 13590500 ~ 13590970 (-) True G254568
TU301888 lncRNA upstream 208523 14530825 ~ 14532588 (-) True G255020
TU301946 lncRNA upstream 377922 14700224 ~ 14704270 (-) False G255071
TU301947 lncRNA upstream 377922 14700224 ~ 14704270 (-) True G255071
TU302215 lncRNA upstream 553342 14875644 ~ 14878506 (-) True G255306
TU302322 lncRNA upstream 858084 15180386 ~ 15180640 (-) True G255403
XM_034312019.1 mRNA downstream 81086 14177226 ~ 14197008 (-) True edn3b
XM_026921095.2 mRNA downstream 105990 14162532 ~ 14172104 (-) True ttll9
XM_026921096.2 mRNA downstream 107176 14162526 ~ 14170918 (-) False ttll9
XM_026921006.2 mRNA downstream 124462 14151427 ~ 14153632 (-) True ppp1r3da
XM_026921005.2 mRNA downstream 124672 14151427 ~ 14153422 (-) False ppp1r3da
XM_026921044.2 mRNA upstream 153373 14475675 ~ 14484107 (-) True ppp4r2a
XM_026921048.2 mRNA upstream 251590 14573892 ~ 14614655 (-) False tns2a
XM_026921050.2 mRNA upstream 251590 14573892 ~ 14614655 (-) False tns2a
XM_026921047.2 mRNA upstream 251590 14573892 ~ 14614655 (-) True tns2a
XM_026921051.2 mRNA upstream 251590 14573892 ~ 14608165 (-) False tns2a
XR_004579685.1 other downstream 127513 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other downstream 127513 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other downstream 127513 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other downstream 131263 14129216 ~ 14146831 (-) False LOC113530423
TU300417 other downstream 2118734 12158772 ~ 12159360 (-) False ptk6b
TU301948 other upstream 376970 14699272 ~ 14704270 (-) False G255071
XR_003403204.1 other upstream 1165455 15487757 ~ 15487859 (-) True LOC113530990
TU302676 other upstream 1392733 15715035 ~ 15820154 (-) False znf512b
XR_003403156.2 other upstream 2325521 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 2491082 16813384 ~ 16831259 (-) False si:ch211-210c8.6

Expression Profile