RNA id: XM_034312119.1


Basic Information

Item Value
RNA id XM_034312119.1
length 1541
RNA type mRNA
GC content 0.40
exon number 3
gene id si:dkey-93l1.9
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10930247 ~ 10931966 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttcagtgtatagcaaaaatgaagaattggccttgcaattctaatacttttggaggggaatGTATGTCCAAGTTAATCCAATTTTTAGACTAAGTCTTCAAACAGGTTTTATCTCATGCTGATGTACTCAAATACAGTCTCACCTCATGCTAATTAGGTGTAAGTGGACTACCACAAAGCCACACTCTTACTTGCTAAGCttcactacatggccaaaagtatgtggacacctgaccaatcctatatgtgctttttgaacatcccattccagatttagccctCACCTTtagctgttgtaataacctccactcttctgggaaggctttctactacaTTTTAAAACGTAGCTATAGGGATttctgctcattcagccacaagagaatTAGGGAGGTCAGGCAATGATGTCAGGTGAAACGGTCTGGCGTGCAGTcaacattccagttcatcccaaaggtgttcactggggttgaaCATCGGGCTTTGTACAGGCCAGTAAGGTTCTTCCATACCAagcttgacaaaccatgtctttatggacctctctttgtgcacaggtgcattgtcatgcaggACTATGTCTGGTCCCCTTTATTCCAGTGAAAGGAAttcttaatgttacagcatacaaagacattctagacaattgtgtgcttcaaactttgtgtcaacagtttggggaaagctCACACATGaatgtgaaggtcaggtgtccacatactattggccatatagtgtatttaaattgtaatgGCATTGCTTACTACTTTTTACTGGAACCACTTATGCTGTGATTTGTTTCTCTAGAATTGACTTTCATTTGAAATTTCCATGGAAACCTACAATCAGTGAAGATATAAATCCTTATGCCATCCTCAGTAATTCCTTTAATCCCACAAACCTTTGTAAACTAAGGACCAGAGACAAAAGGCCCACTGGCACCTGGACATGAACCATTATGCCACTAAGAAGAGTACAGCTCAGAGCATGCTTGACATAGCTCTACTAATGGCCAACTCCTCTCAGCTAAAGAGGCACTGCAGGCCTGAGTAATGATTCCATCTCATTGCACTcatcattctgtctctcatacTCCAGGTCATTGCTGGCCTCCTTCTGATCTTCATTGTGAAACATAACCTGAATGATGAAAGGAAGCAACCTAAACTGAACATGTTAAACAATGTGGCTACAGTTTTCATCTAAATTACTCTCATCATTGCCTTGGGCTTTGATTCTGGTCAGTGACGGTGCACAATTTTTTGTTGGTTATTTCCAAATGTAGATCTTTATTAATAGTGGAATCTATAATTTAGGATAATGCATGTATATGTTAGCAGTgtataacagtaaaatatgTTAATTTGTGAGGTGCCATGCAGCTCATAAACTGGGTGCATCCATTTGTGTTATGTACTGTCTCCACATATTGCTCTGCTTACCTATTGCTATGTCACTTTTGTTCACTTTTAGGAGTTATTTAATGGATGCTGCCAGTCCTCAAATGGACTCTTCTGGGGatgattaaattatattcaAACATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299171 lncRNA upstream 150843 10778540 ~ 10779404 (+) False si:dkey-32e6.3
TU299172 lncRNA upstream 164140 10765126 ~ 10766107 (+) True G252732
TU299154 lncRNA upstream 274222 10655807 ~ 10656025 (+) True G252720
TU299148 lncRNA upstream 301443 10624852 ~ 10628804 (+) True LOC117599292
TU299371 lncRNA downstream 13114 10945080 ~ 10946913 (+) True G252893
TU299383 lncRNA downstream 17703 10949669 ~ 10953182 (+) False G252903
TU299384 lncRNA downstream 17703 10949669 ~ 10961642 (+) True G252903
TU299445 lncRNA downstream 66115 10998081 ~ 10999820 (+) True G252955
TU299459 lncRNA downstream 106252 11038218 ~ 11039431 (+) True G252966
XM_026920320.2 mRNA upstream 3038 10918275 ~ 10927209 (+) True haus7
XM_034311611.1 mRNA upstream 3038 10919197 ~ 10927209 (+) False haus7
XM_026920493.2 mRNA upstream 16651 10872029 ~ 10913596 (+) False atp2b3b
XM_026920502.2 mRNA upstream 16651 10872029 ~ 10913596 (+) True atp2b3b
XM_026920494.2 mRNA upstream 16651 10872029 ~ 10913596 (+) False atp2b3b
XM_026921426.2 mRNA downstream 62911 10994877 ~ 10997433 (+) True rpl10
XM_034311874.1 mRNA downstream 72870 11004836 ~ 11006641 (+) True LOC113530834
XM_026921369.2 mRNA downstream 77815 11009781 ~ 11014655 (+) True ognb
XM_034312183.1 mRNA downstream 119557 11051523 ~ 11079274 (+) True dnah12
XM_034312184.1 mRNA downstream 119557 11051523 ~ 11076063 (+) False dnah12
XR_004579720.1 other upstream 17714 10872029 ~ 10912533 (+) False atp2b3b
TU299368 other upstream 78902 10848851 ~ 10851345 (+) False b4galt3
XR_004579736.1 other upstream 591042 10292606 ~ 10339205 (+) False kcnab2b
TU297603 other upstream 2304385 8621005 ~ 8625862 (+) False LOC113530359
TU297540 other upstream 2572147 8352789 ~ 8358100 (+) False spen
XR_003403205.1 other downstream 64643 10996609 ~ 10996743 (+) True LOC113530991
TU299671 other downstream 299463 11231429 ~ 11237362 (+) True oard1
trnah-gug_14 other downstream 327881 11259847 ~ 11259918 (+) True trnah-gug_14
trnaf-gaa_28 other downstream 335645 11267611 ~ 11267683 (+) True trnaf-gaa_28
XR_003403199.2 other downstream 460626 11392592 ~ 11415449 (+) False wu:fa11c10

Expression Profile