RNA id: XR_004579748.1


Basic Information

Item Value
RNA id XR_004579748.1
length 4500
RNA type misc_RNA
GC content 0.51
exon number 16
gene id fyco1a
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21925244 ~ 21954662 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCTAGACTTTTCACTCATGGAGAAAACgtttttaaacattgtaaaaCGTTACACAAGACTTCACTCCTAAATGTTCAATAATGTTTGCTTTTAGACATTTATATGCCAATCTTTGACCTGTCAATCACACAGTTTGACAAGACTAGCAGGTTTGTTCACCCATGTAAACATCGGAAAGGCTCAAGATCTCCAAAACAGACCACACATGACCTCTTGACCCGGTTGCCAGGGAGTGAGCAGGACCATGGCGACAGCTGGGGAGGGCCAGCTCCAGAGGATTATCAGAGATCTGCAtgATGTTGTGGCAGAACTCACCAAAGAGTACAAAGAGAATGGAGAGCCAATCACAGATGACAGCACTAACCTGCAAAAGTTCTCCAACAAGCTAGAGTACCTGCTACAGTTTGACCAGAAGGAGAAGACCACGTTTCTGGGCACAAGGAAAGATTACTGGGACTACTTTAGCGACTGTCTGGCCAAAATCAAAGGAGCCAATGATGGCATTCGCTTTGTCAAATCCATTCCTGAGctaaAGACGTCGCTGGGAAAAGGTCGAGCATTTATCCGCTACTCTCTGGTCCACCAACGGTTAGCTGACACCCTTCAGCAGTGCCTCATGAACAAAAAGGCCACCAGTGACTGGTATTATTCCCGAAGTCCCTTTCTGAAGCCTCATCTCAGTGTGGACATTGTTAACTCTCTCTACGAGCTCAATGAAGTCCAGTTTGATGTGGCGTCCCGGGGGCACGACCTTGATTCAGCTTGGCCCACGTTTGCAAGGCGGACTCTGGGTATGACCAACTCTCCGAGCCACATGTGGAAAGCACCGAGCCGCAGCTCCAGCATTAACAGCCTGGCCAGCTCATACTCACAGGCCCCGGAGTTTCTCTGCAGTCCAGAGTTTGGACATAGCTTGCTGAGTGAATCTGCAGAGCCGTTGTCTGATTCTGCCATCACCACCATGGACGAGCTTCGTCTGGAGCTGGATCAGTCAGAGCTGAAACAACATGAGCTCGTGGAGCATGTTCAACAGCTTGGCAGCGAGGCCACAGAGCTCCGTGAAGTGGTGGCTGAACTGCAGAGGCAGCTGGACATTTCATTAGCAGCTCAGTCTAACCACCAGGAGCTTCAGCTCAAGCTGGAGGTATTGGCTGAGAGGGAACAGACTCTAGCCCAAGATCTGGAGATCCTGAGGGGACGTGAGGCTGTTAAAGAGGCAGCAAATCAGGAAATTCAGGGCAAGTTAGCTGCTgcggaaaaaaagaatgaggaGCTAATGGCTAAACTAGATGGCATGCTTGAGGAGAAAGGGCAGAGGACAGCTAGCCAATTTGATTCAGCCCAAAAGATACATGAACTCCTGGATGGACTGAAGGAAGCAGAGAAAGGCAGGATAGAAGCTCTAGCACATGGTGAAGAGAAAAGGATGCAGGCTGAACATCTGGCTGAGGAGCTCAGAATGAAAGAGCAAGCTCTGAGAGATGTAGAAGTTAAAATGGCTGCTTTAACAGAGAAGGGTACAAAGCTGATGAAGCAGGCAGAAGAACAACGTAATGCCATGGATAAACTCCAGGAGGAGCTgtcagtgagagagaaggaagcAAGCAGTCTTCAGAAAGACCTACAAGACCTTCAGCACTGTCTGGAGACGATGGAGCAACAGGCTGCGGAAGAGAGGAAAAGGGCAttggaggagagagaggtgCTGCAGAAAAAGTTGAGCTCTTTAAAAGAAAGCCTAGAAGGACAAGTACAAAACCTAAAGGCACAACTCAGGAGTAAAGAAACTGAACTTATCTCCAGTGTGAAGCAGATCCAGAACCTAGGGGCCGAAGCTGAGAAGATAGCAGGCGAGAAACAGTGTCTGAGTGGGAGTATAGTAGAACTGGATACACGCATCAAAGATCAGACCAAGAAGATTGACGAATACAAGCAAGAGTGCACCAGTCTCACAGAGCTGAACAACAAGCTCCTTCAGACAGTCAGTAACAACGAGGAGATCATGAAGgagctgaagaaaagcaagGCTGTGTTAGAAAATGATCTGGCTGGGCTGAGGGCCTCTGAAAAACAGCTCAGAGGTCAACTTGATGATGCTAAAGTGACAGTGGATGAGAGGGAACAGCGGATGCGTGAGGAGAACCGCAACCTGGATGAGAAGCTCCAAAAAGCAATCATGCAGATCAAGGAGTTGGAAAGCATTGTCCACAGGTTGGAGCAGGAGAAAAAAGATCTCAGGGAGGAGTGCATAAAGAGTAAAGATGCTCTCACAGCTGCACAGGGAGAACTACATAAATTCACTGACCAGATCAGGGATCTAGAGAGTAGCCTAGAGGTGGCAAGATGTAACGAGGTAAATCTCACCTTGCAGCTAAAGGAAGAACACTCACAGCTGGAGGATCGAGAGAGGCTTTGTGAGGAGCTTCAGGAAAGACTTGATGAACTAGAGGCCGTGGAGGGAGAACTGGAGGCAGGGAAGGCAGAGGCAGAGCGAGCCTTGGAGAAGCAGAAGGAGATGATGGAAAGGTTGGAAGTCCAGAAGAAAGCGGTGGAAGAATCTCAGCTGGAGATGAGTGCCTGCCATGCAAAGGAAGTCCAGGATATGACCTTGAAAGTAGCACTACTGGAGGAGCAGCTAGGCCTGAATGTGAAAGAAGTGTCCAGGCTTCAGGAGGAAATGGTGGACTTGAAGGCCAGACTGCTCTGTTCTGAGGAGGAGAAAGTAAAGATCCAGACTAAGCTGGAAATCACAGAGGCATCTAGGATAGAGCTGCAGACTTTGACAGAACAACTTAAAAAGCAAGCTGAGGAGCAGAACCGAAATCACGTCAATGAACTTTTACAGTCCAAgcagagcatggaggagatatTATCTGAGCTAGGTGCAGAAAGATCTGCGCTTGCTAAAATATCAGCTGACTTCGCAGCAGCTCAAGAGGACCTGGCTGTAATAAAGATCCAAAATGAACGACTGGTCATGGAGAACGCCGAGACCAGAGAGGGACTCCACAGGGCTAACACAGAGATGGCCGAGCTGGGAATGACCATCTGCAAGCTGACAGCTGAACGGGAGGAAGCTCAAGAGCGCTGGGCAGCTGAGAGCACCCGGATCCATGAGCTGGAGGAGCAGGGTGAGCGTGAAACGGATCGTCTGAATGCCAGCATCGCGGCACTACGGCAGGAGAATGCCAGTTTGCGAGAGGAGCTCCTGCAAACGGAGAAGCTTCCAGAAACAGTGCTGGAGCTGAAGGGGATGCTGGATAAatctgagagggagagagaagtgGCACGTGAGGAGACGGCAGCCATGAGGTTTCAGATGAGTACAGAGAATATGGCGCACCAAAACCATGTGAAGAGCTTAAATGAAGAGCTTGAGAGTTTAAAAGCGCAGCTGAAGTCTGAAAGCGAGAAGGCATCCAGCCTGGAGGTCAAAGTCTCAGAGTTAGAGGAGATGAATTCGGAGTGCTCTCGACTGATGGGGGAGAAAGATTCGCACATCAACAAGGCCGAGAGCCAGATTCGCTGTGGAGAGGATGAAATACAGCAGCTGAAGGAGAGAGTGACatgTGTGCAGGAGGCTCTGGCACTagcagagacagagcgagaCAAGCTGAAGGAGAAGATGGAGAAGGTTCAGTCTCACGCTCAAGCCGagcaaatcaaaatggctgctgagATCGAAGACCTCAGCCACATCAAGACCACGCTGGAGGAGCGGCTCATCGAGCTCATCAGAGAGAAGGACGCTCTGTGGCAGAAGTCTGATGCTCTGGAGTTTGAGCAGAAGCAGAGGGCGGAGGAACAGTGGTGGTTAGTGGACCAAGAGGCTACACACTGTCTGAGCTGCAAGAGCCAGTTCACATGGTGGCTCCGTAAGCATCACTGCAGgttgtgTGGGCGGATCTTCTGCTACTATTGCAGTAATAACTTTGTGAGTACGAGGTCTGGGGGGAAAAAGGAACGCTGCTGCAGGGAGTGTTACACACAGCACAGTGCCGTGGTGGAGAGATTCACCCGCTCTGAAATGAGCAGCCCCGCCGACACAcctgcagtacacacacacacagccagcgcACCAACAACTCCACCTGCACCCCCGTACATACCTACACCCAGAgttacagtgaccGATCCGAATGTAAAGCAGGACGATGGAGTGTTCGACATCATCACTGACGAGGAGGTAAATGGACTGTACGACAGCGACACTCTCTCACAAACCACCGCAGAGTCACAGGATGGAGAAGCAGGGAGCCGGGCCCCCCAGGACAGGTGTTTCTGGTGATGCAGTGGTTGCTGAGGAACAGGAGGAAATGCCCCCAACTGTACAAGATGCCGAAATCCATCTACTCAAATCAGGAGAACTTGCCTCCTCAGTCGTGCTGGACATCACCGAGATCCCGCAGTTCGGCGACGCCTCTCGCGAGCTCTTCGTCAAGTCCAGTTGCTACAGCATCGTCTCCGTCACCGTACACGAGCACGGCCATGCTGTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306588 lncRNA downstream 122415 21805096 ~ 21806760 (-) True G258966
TU306582 lncRNA downstream 129931 21798836 ~ 21799244 (-) True G258961
TU306562 lncRNA downstream 176723 21751405 ~ 21752452 (-) True G258942
TU306559 lncRNA downstream 179174 21749791 ~ 21750001 (-) True G258940
XR_003403152.2 lncRNA downstream 330046 21588429 ~ 21599129 (-) True LOC113530427
TU306772 lncRNA upstream 61881 22016486 ~ 22021151 (-) False cpeb2
TU306775 lncRNA upstream 76673 22031278 ~ 22035963 (-) False cpeb2
TU306958 lncRNA upstream 387256 22341861 ~ 22371089 (-) True G259294
TU307005 lncRNA upstream 467987 22422592 ~ 22424242 (-) True G259337
XR_004579704.1 lncRNA upstream 513058 22467663 ~ 22469753 (-) True LOC117599239
XM_026920925.2 mRNA downstream 7583 21884665 ~ 21921592 (-) True ghrhrl
XM_034312131.1 mRNA downstream 45929 21858212 ~ 21883246 (-) True gpsm2l
XM_026920917.2 mRNA downstream 93978 21829265 ~ 21835197 (-) True ftr92
XM_026920092.2 mRNA downstream 257823 21628132 ~ 21671352 (-) True LOC113530264
XM_026920093.2 mRNA downstream 257823 21631393 ~ 21671352 (-) False LOC113530264
XM_026920912.2 mRNA upstream 14009 21968614 ~ 21992840 (-) True cc2d2a
XM_026920924.2 mRNA upstream 40429 21995034 ~ 22000942 (-) True LOC113530694
XM_026920914.2 mRNA upstream 44836 21999441 ~ 22014229 (-) True LOC113530687
XM_026920418.2 mRNA upstream 61442 22016047 ~ 22048388 (-) False cpeb2
XM_026920417.2 mRNA upstream 61442 22016047 ~ 22048388 (-) False cpeb2
trnaq-uug_7 other downstream 574478 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 759477 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 1061217 20830828 ~ 20867958 (-) False LOC117599256
TU305550 other downstream 1657268 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 1809226 20110463 ~ 20119949 (-) False mlh3
TU306971 other upstream 491425 22446030 ~ 22449427 (-) True G259306
XR_004579695.1 other upstream 1243977 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 1809069 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 2547128 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 2551023 24505628 ~ 24508333 (-) False tent5ab

Expression Profile