RNA id: XM_034312184.1


Basic Information

Item Value
RNA id XM_034312184.1
length 10040
RNA type mRNA
GC content 0.46
exon number 63
gene id dnah12
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11051523 ~ 11079274 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAACAGTCAGCTCCGCCACCAAACTTTAGCCAGTTTAGGGATGAAGTTGAAACACTGACTGTCAACAGtaGAGGTTTGAAATGCCTACCTCATCGGCAGCATGTAAGGCTTCCTTAGAGGATGGGTTGAGAAAGTACACCGTACTTCCTCCCATCCCAAGCCCTCCAGAACGGGAAAACTCCAGTCTTCCTGAGCACAGAGCGGCAGTGAGGAGAAAACTTCTTTGCTACAGCAGGAGTAAACAACAGCAACATGaactgcataaaatcatGGTTGCGAGTGCGACACAAGCCTATATAAAAGCCAAGGACACAATGGATTCTCCATACAGTGAACCTGAGTTTCCCTCAGCAatGATGAGTGAAGCAAGGAAACAGCAAATGAACTACATGTTCCTAAAGCAGTGTGTGGAAAGTAGACCAATTGTACCCATTCAGCAGCAGTGGCTGGACAACATGTTGAGCCTTATACCACCTCAGCTCCGGCTGGAACCTGGCAGAACGGAGCTGCTGGAGGAATTGTGCAAGGAGGTCAGCACGAACTTCCTTAGCACCATGGTAAAGTTCACAGttAACAATATCCTCCAGAAGCCACAGATGGATACAGATGTTCCCTTACAAAAACCACCTGCACCCAAGATTCTTGATTTCAGCAGGCCATGGCATAAAAGCTTTATCAGGAGTCGAAAGAAGATCAAAGAAAATTTGCACATCCTACACCCAGTAATGAAAGTCATTTTGGATACCTGTTACATAACATTTTCTCAGCTGCTCCTGGTTGATATCTCAGACTGCAGGTCTACAGGGCCTGTGGACTGTGAGAACCTAAAGAACAAAGTGTCTTTGGAGTGTGAGAAAATTGAGGAGAAGCTCATGAACACCTGGTTCCCAAAGGTTATTCACTTGCTTACCAGCAAGAACACAGTGCAACGAATCAGAGGAGAGAAGCTGGATGCCTTTTATAACTGTGCTTCAACACTTCTCTCCAATCAGCTGAAGGCTCTGATTGAGAGAAATGTGGAGGCATATGTCAGTTTGTTTGAACCCCTCAACAAGGAGAAGCTTCCCCTCTTCAGGATGGACCTGACCTTTGATGATGAGAAGATGGACTTCTATCCCAGCTTTCAGGATCTAGAGGAGGCTGTGTTAGAGATTTTCAACTCAATCATCAATACCTTGCAGAAAGTCCAGACTGTTCAGTCCTGGCTAGATGAGGCCAATAGTTCAGTGGTTGATGCTAAACTGGCAGACCACATTGTCATATGGGCACAAACTACGCTGAGGAACGCTGTCCGTGAAAACCTAGAGGCACCTGCGAAACACTTTCAGTATTATATTGACAACTATGATTGGCTAGTCAATGGGAGTGCAAAGAATCTGGTAGAGAAATTTATGGAGGAGGAGCACAGTTTTGAGCAGTATACTGAGCAAGTGGAGGTGTTCCGTGCTCTGTCCAAAGAGATCTCCAGCCTCCCCTCAGTGGCTCATTTTGACATGATCCGCTTGGACTGCGAGGAACTCAAACAAGGGCTGGCAAAGAAAGCACAGAATTTTGCTCAGATCCTTGTTGCAAGACTGATCAGCACAAATCGTGACCAGTGCCTTCAaatctgTAAAGAGTTTGAGACTATTCGGGACAAGGTTACAAAAGACCCAGAGACAACAGAAGACATGACAGAGATGATTGCGTATATTGATCATGCAAAAACCAAGGGAATAGAAGAGCTAAGCAGTAAGATAATGGAAACACATCGTAGATTAAATTACCTACTGGATGTACACATATTTGATGCAGAAGACTTGGAGCTTCATTCAACAGTACTGCTGTGGCCACAAAATATTAATCCAATTTTTGAGCTCAGTGTTGAGGTGTTGGAAAAAGCCAAGCAGAGAGGAGAGCAGGAGCTGCTGGGCAGGAGGGAGAAGTTGATGCTGGAGCTGGTGAAACTTGGCCGAAGGACTGAGGAGTTTTCAGCATGCTCAGAACTGGATATGATGCAACAGTATGTGATAGATGTAAGAACAGTGCAGAAGAGGCTTCAGGAAGTCGAGGAGTCGATTGTCTTCATCAACAAAGAGGAGGCTCTGTACAACTGGGACCTAACTGTTTATCCAGAGGTTGATATGATCAAGGAGAACATTGAACCCTATCAGAAGCTGTTTGGGCTTGTACTAAAATGGCAGCGCACTGAGAAGAGatggatggatggttctTTCTTAGATTTGAATGGTGAAAGCATGGAGGTAGAGGTGGATGAGTTTTTCCGAGAAATCTATAAGAGTCTAAAGTTTTTCCAGCAGAAACAGAAGAAGGCTGAACAAGAGAGAGCGAGCGTGGCTGCAGAAAAGAGACGGCCtggagaagaagatgaagacAAAGAGGAGAGTTCTACTGCTGCGGTCTGCTGCAGAGTCCTAGAGCAAATTAAAGAATTCAAGGAGCACATCCCAACAGTGTCCATACTGTGTAATCCTGGAATTAGGGTTCGACACTGGGAACAGATGTCAGAGATTGTGAACTTCGACATGATGCCCAACTCAGGCACCACACTGCGTAAAGTCCTTAAACAGAACCTTACCTCTTACATGGAGCAGTTTGAGACCATCAGTGCAGCTGCAGGCAAAGAATTCTCTCTGGAGAAGGCCATGCAAAATATGGTGGAGGGCTGGGATGCTGTGTCATTCCATCATCATGCATATAGGGAGTCTGGTGTCTCTATTCTTACTGCAGTGGATGAAATTCAGACCATGTTGGATGACCAGATAGTGAAAACCCAGACCATGAGGGGTTCCCCTTTTATCAAGCCTTTTGAGGCAGAGATCAAGGCCTGGGAGGAACGTTTGATCCATATCCAGGACACCATAGACGAGTGGCTGAAGGTACAGGCCCAGTGGCTCTACTTGGAGCCCATCTTCAGCTCACAGGACATCATGCAGCAGATGCCTGAAGAGGGACGTCTATTCCAGATGGTGGACAAACACTGGAAGGAGGTTATGAGACACTGTGTGAAAGACTCAAAGGTTTTACCAGCAACTTCGCTACCCGGCTTACTTGAGAAGCTTCAGGACTCAAATAACCTTCTGGACCAAATTATGAAAGGACTGAATGCTTACCTTGAGAAGAAAAGACTGTTCTTTCCACGTTTTTTCTTCCTGTCAAATGATGAGATGCTGGAGATCCTCTCTGAAACCAAGGACCCTCTGCGTGTACAGCCTCACCTGAAGAAGTGCTTTGAGGGCATCGCCAAGTTAGATTTCATGCCCAACTTAGACATCCAGGCCATGTACAGTAGTGAGGGTGAGCGAGTGGGCCTGATTCAGCTGATTTCCACTTCAGAGGCACGGGGAGCAGTGGAGAAGTGGCTTGTGCAGGTGGAGGATATGATGCTGCGTAGTATCAGGGACGTAATTAACCGTGCCAGACTGGCTTACCCAGAGTCCAAGAGGAGTCAGTGGGTTTGTGACTGGCCTGGCCAGGTGGTGCTCTGTACCTCTCAAATATACTGGACTCTAGAAGTGCATGAAGCTATCAGGAGTGGAATTAATGGTCTGAAGGACTACTATGATCAGCTGCAGAACCAACTGAATGACATTGTGGAGCTAGTAAGGGGCAAACTGCCCAAACAGACTCGTACTACTCTAGGAGCACTGGTCACTATAGATGTGCATGCCCGTGATGTTGTAATGGAAATGATCCAGAAAGGTGTTTCTTGTGAGACAGACTTCCAGTGGTTAGCACAGCTGCGTTACTACTGGACAAATGAAAATGTCCGTGTCTGCATCATAAATTGTGATGTCAAGTATGCTTATGAGTATTTGGGAAATTCACCTCGTTTGGTCATCACACCTTTAACAGACCGATGCTACCGAACTTTGATTGGAGCATTTTATCTGAATTTAGGTGGAGCTCCTGAAGGCCCTGCAGGAACAGGAAAGACAGAGACCACTAAAGACTTGGCCAAAGCCCTtgctgtgcagtgtgtagtgtttaacTGCTCTGATGGACTTGACTACCTAGCCATGGGGAAGTTCTTTAAGGGACTGGCGTCCTCAGGGGCATGGGCATGCTTTGATGAGTTTAACCGCATTGAGCTGGAGGTGCTTTCTGTGGTGGCACAGCAGATCTTGTGCATTCAGAGAGCCATTGAGTTGAAGCTGGAAGTTTTTGATTTTGAGGGTACAGAGCTTCGCCTCAATCCCAACTGCTTTGTAGCCATCACCATGAACCCTGGATATGCAGGAAGATCAGAGCTTCCTGATAACCTTAAAGTTTTGTTTAGAACAGTGGCAATGATGGTACCCAACTATGCTTTGATCGCAGAGATCTCCCTGTATTCTTATGGCTTCTTGAATGCCAAACCACTTTCAGTGAAGATAGTAATGACCTACAGGTTGTGCTCCGAGCAGTTGTCCTCCCAGTTCCACTATGATTATGGAATGAGAGCTGTCAAAGCAGTACTGGTGGCAGCAGGGAACCTCAAACTCAAATTTCCAAATGAGAATGAAGATATTCTTCTTCTCCGGTCCATAAAGGATGTGAATGAGCCCAAGTTTCTCTCCCATGATATCCCTCTCTTTAATGGAATTACCAGTGACCTCTTCCCTGGAGTCTCTCTGCCCACAGCCGACTATCAGCTCCTTCTCGCTTGTGCTCATGAATGctgtataaaacacaatgtccaGCCTGTGAACATTTTCCTGGATAAAATTATCCAAACTTATGAGATGATGATTGTACGCCATGGGTTCATGCTTGTTGGTGAACCTTTTGCTGGCAAAACCAAAGTGCTCCATGTTTTAGCTGACACCCTCACACTTATGAATGAGAGGGGCTACAATGAAGAGGAGAAAGTGCAATATCTCACTGTCAACCCTAAATCCATTACAATGGGACAGCTTTTTGGTCAGTTCGACCCAGTGTCTCATGAGtggACTGATGGGATTGTGGCAAATACTTTTCGGGAGTTTGCCTCAGCTGAGACCCCAGACAGGAAGTGGGTGGTGTTTGATGGACCTATTGACACACTTTGGATTGAGAGCATGAACACTGTGCTGGATGACAATAAAAAGCTGTGCCTCATGAGTGGAGAAATTATCCAGATGTCCAATCAGATGAGTCTGATTTTCGAGGCGATGGACCTATCACAGGCCTCACCAGCCACAGTGAGCCGTTGTGGGATGATCTACATGGAGCCGTCTCAGCTGGGATGGCCTCCTCTGGTGTCATCCTGGTTGAAAACTCTACCCCAGCCTCTTCAGACCCAGGAGAATTCCACACTGCTGCTGGAGCTGTTTAATTGGCTGATCCCACCAGCACACAGGATGTTAAGAAAAAACTGTAAGGAGGTTGTCTCCACCAGTAACAGTAATACAGTTGTGTCACTTACACGACTCTTTGAAATGCTTCTTACGGAACCTGTAAATGAAGAACCTGGAAACAAGAATATTCGTACATGGATCATGGCTGCCTTTGCATTTTCTTTGGTGTGGTCTGTTGGTGGAAGCTGTGATGGTGACAGCCGTGAAAGATTTGATAAGTTTCTGAGGGAAATCATAATGGGAAAATCAGACAATCACCCAATCCCTGACACTGTGTCAAAATGGGAATGCCCTTTCGATGAAAAGGGTCTCGTTTATGACTATTCTTATGAGTTCAAAGGGAAAGGCCATTGGATTCATTGGAATGAATCAATAAAGAATGTCACATTAGGGGACAAGAACACCAAAGTGCAGAACATCATTGTCCCTACAATTGACACCGTGCGCTACACCTACCTAATGGACCTCTGTATTAATTATGGAATGCCACTTCTTTTTGTTGGTCCCACTGGCACTGGAaagtctgtttatgtgaagGAGAAACTGATGAACAACCTAGACAAGGACCGCTACCTTCCATTCTTTATTAACTTTTCAGCTCGCACTAGTGCTAACCAGACTCAGAACATAATTATGTCCAGGCTGGACAAGAGAAGAAAGGGAGTATTTGGACCTCCAATGGGAaagaaatgcattatttttgtggATGATATGAATATGCCAGCAATGGAAGTGTTTGGTGCACAGCCTCCTATTGAGCTGCTTCGTCAGTATTTTGACCATGGGAACTGGTATGACCTAAAGGACACCTCCAAAATCACTTTGGTTGACCTGCAATTGATCGCAGCTATGGGTCCTCCTGGTGGTGGGAGGAATGCAGTGACCTCTCGTTTCCTGCGCCACTTTAACATTTGTAGTATCAATGCATTCAGTGATGACACCATGTCACGAATATTCTCTAATGTGGTTGCCTTCTATTTCCGTAACAATGGTTTCCCACCTGATTGCTTCACCATAGGCAACCAGATAGTTTCTGCTACCTTGGAGGTTTATAAAAAGGCAATGCAAAACCTGCTTCCCACCCCTGCTAAATCACATTACACGTTCAACCTGAGAGATTTCTCGCGTGTAGTACAGGGCTGCCTGCTGCTAAAGAAGGAATCTCTGGAGAGCAAGCACACCTTGATTCGCCTGTTTGTTCATGAGGTGTTCAGAGTCTTCTACGATCGCCTGGTGGATGAGCAGGACCAAGCCTGGCTCTACAAACTAATGAACGTCATtgttaaagaacattttaaggAAAACTTTGACACAGTCTTTGAGCACCTCAAATCTGACAAAAAATCTCTGTGTGAGGAGAACATGAAGAGCTTGTTATTTGGAGACTACATGAATCCTGATGTGGATCCCAGTGAGAGACTATACGCAGAGGTTCCCAGCATGGAGAGCTTCAGTCAGGTGGTGGAGTCCTGTCTGGCAGAGTACAACCAGACACACAAGAACCGTATGAACCTGGTCATCTTTCGCTATGTCCTAGAGCACTTGTCCAGGATAAGCCGTGTGCTGAAGCAGCCTGGAGGAAACGCTCTGCTGGTGGGAGTTGGCGGAAGTGGCCGTCAGTCCATCACTAAGCTGGCCACCTTCATGGCTGGCATGACTCTGTTTCAGCCTGAGATTTCCAAGAACTATGGCATGAACGAGTGGAGAGATGATCTTAAGCTTTTGCTGAAGAACGCAGGTGTGAAGGGCCAGAAGACAGTGTTCCTGCTTACGGATGCTCAGATAAAAGAGGAGGCCTTTTTAGAAGATGTGGACAGTGTGTTAAACACCGGCGAGGTTCCAAACATATTTGCTGTGGATGAGAAGCAAGAGATTATGGAGGCAGTGCGGCCCATAGCCCAGGCTGGTAATAAGAATTTAGAGTTCAGCCCTCTGGCTCTGTTTGCCTACTTTGTAAACCGCTGCAGAGAGAACTTGCACATAGTGGTGGCATTCAGCCCTATTGGAGATACCTTTAGAAACCGCCTGAGGCAGTTCCCATCTCTTATCAACTGCTGCACAATTAACTGGTTCCAGCCATGGCCAGAAGAGGCATTGGAACGAGTTGCCACCAAGTTTTTAGAGACTCTAGAGATGAATGACCACGAACGGCTAGAAGTTATGTTAATCTGCAAGACTTTCCATACTTCTGCTACTGATCTGTCCAAAAGGTTTCTATCTGAGCTTGGTCGCCATAATTATGTGACTCCCACTTCCTACTTGGAGCTGATAGCTGCATTTAGGCTGCTCCTTACTCAGAAACGGGACACTGTAATGAAGGCAAAGAAGAGGTATACTAATGGGCTGGACAAACTGGCTTTTGCTGAGTCCCagGTGGGTGAAATGAAGAAGGAGCTTGTAGATCTTCAGCCCAAACTGGAACAGGCCAAGATTGACAACACCAATATAATGAAGGTGATAGAGGTAGAGTCAGTGCAAGTGGAGGCTAAGAGTAAAGTTGTGCGTGTGGATGAAGAGGCAGCTACTCAAAAAGCAAACGAGGCACAGGCTCTGAAgaatgagtgtgagagtgacCTTGCTGAGGCCATCCCTGCTCTGGAGGCTGCTCTCTCTGCTCTTGACACTCTGAAGcCCTCTGACATTACAATTGTAAAGTCTATGAAAAACCCTCCAGCTGGAGTGAAGCTTGTGAtggcagcagtgtgtgtaatgaaggATATCAAGCCTGAGAAAATCAATGACCCTGCAGGAACAGGAAAGAAGATAGAAGACTACTGGGGTCCCAGCAAGAAATTGCTTGGTGATATGAATTTCCTCAGGGACCTGAAAGAATATGACAAGGACAACATTCCTGCACAAGTTATGCACAAAATCCGTAGTGAGTATATGACCAACCCTGACTTCGACCCCACCAAAGTGGTCAAGGCTTCCTCTGCAGCTGAGGGTCTGTGCAAATGGATCACTGCCATGGAGGTTTATGACAGAGTGGCAAAGGTAGTGGCTCCGAAGAAGGCTAATCTGGCTGTGGCACAGGAGTCGCTGGCTGCTACTATGGCCCTGCTGAATCAAAAGAGAGCAGAGCTGAAAGAAGTGGAGGACCGCTTGGCTTCCCTGCAGAAGACATTTGAGGAGAAGACTGAGGAGAAGGCTCAGCTAGAATTCCAGGTGGACCTTTGTGCCCGCAAGCTGGAGAGAGCTGAAAAGCTCATTGGGGGCTTAGGAGGAGAAAAGACTAGGTGGTCTAAAGCTGCAGATGACCTTCAGAACACGTATGATAATTTGACAGGGGACGTGCTGATATCTGCTGGTGTAATTGCTTACCTTGGAGCCTTCACTGCTGGCTTCCGCCAGGACTGCATTAAGGACTGGACTAAGCTCTGTAAGTCCAAGAAGATCCCATCCTCAGATGACTTCTCTCTGAGTAAAACCCTTGGTGACCCTATCAAGATCAGGGCCTGGAATATCTCTGGACTACCCACTGACAGCTTCTCCATCGACAATGGAGTCATAGTGAGCAACTCCAGAAGATGGCCTTTGATGATTGACCCACAGGGTCAGGCCAACAAATGGGTTAaaaactcagagagagagaacaatctCAATGTGATAAAACTCACTGATGCAGACTATATGAGGACCCTGGAGAACTGCATCCAGTTTGGAACTCCACTGCTGTTAGAGAATGTGGGAGAAGAACTGGACCCCTCTATAGAGCCCTTACTACTCAAACAGATATTTAAACAAGGAGGTATGGATTGCATTAGGCTGGGGGAGAGTGTGATTGAATACTCCAGTGAGTTCCGCTTTTACATCACTACTAAGCTTAGAAACCCTCATTATCTCCCTGAGCTGGCAACCAAAGTGTCCCTGCTCAACTTCATGATCACTCCGGAGGGTCTGGAGGACCAGTTGCTGGGCATTGTGGTGGCTAAAGAGAGGCCAGAGTTGGAAGAGGAGAGGAATGCTCTCATTCTTCAATCTGCTGCCAATAAGAAGCAGCTGAAGGAGATTGAGGACAAAATCCTGGAGACTTTACAGTCCTCAGAGGGGAATATACTGGAGGACGAGAGTGCTATTCAGATCCTAGACTCTGCAAAGATAATGTCTAATGAGATCTCCAAGAAACAGCAGATCGCAGAGAAGACTGAAATTAAAATAGCAGAGTCTAGGGAAGGCTACAGAGCCATTGCCAAGCACTCATCCATCCTGTTTTTCAGCATTGCAGACCTGGCCAACATTGACCCCATGTATCAATACTCACTTAGTTGGTTTGTCAACCTATATATAAACTCCATACAGGACAGTAACAAGTCAAAGATTCTAGAGAAGAGACTGAGATACCTGAATGGCCACTTTACCTACAACCTGTACTGCAACGTGTGTCGCTCTCTCTTTGAGAAGGACAAACTGCtcttctccttcctcctctGCTGCAATCTGCTCTTGGCTAAGAAGGAGATTATGTACTCGGACTTCATGTTCCTGCTCACAGGTGGAGTGGGTCTACAGAATGATGTGCCCAATCCTGATCCCAGCTGGCTCCAAGAGAAGAGCTGGGATGAGATCTGTCGAGCCAGTGAACTGCCTGGCCTGCAGGGCCTCAGAAAATGATCATCTACCGCTGCCTCAGGCCAGATAAAATTGAACCAGCCATTACCAATTATGTAACTGACAAACTGGGCAAAAAGTTTGTTGAACCACCGCCGTTTGATCTAAGTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299459 lncRNA upstream 12092 11038218 ~ 11039431 (+) True G252966
TU299445 lncRNA upstream 51703 10998081 ~ 10999820 (+) True G252955
TU299384 lncRNA upstream 89881 10949669 ~ 10961642 (+) True G252903
TU299383 lncRNA upstream 98341 10949669 ~ 10953182 (+) False G252903
TU299371 lncRNA upstream 104610 10945080 ~ 10946913 (+) True G252893
TU299500 lncRNA downstream 28076 11104139 ~ 11104527 (+) True G252996
TU299682 lncRNA downstream 168698 11244761 ~ 11245472 (+) True G253152
TU299681 lncRNA downstream 169835 11245898 ~ 11246862 (+) True G253151
TU299753 lncRNA downstream 294640 11370703 ~ 11372352 (+) True G253210
TU299755 lncRNA downstream 296932 11372995 ~ 11376620 (+) True G253212
XM_026921369.2 mRNA upstream 36868 11009781 ~ 11014655 (+) True ognb
XM_034311874.1 mRNA upstream 44882 11004836 ~ 11006641 (+) True LOC113530834
XM_026921426.2 mRNA upstream 54090 10994877 ~ 10997433 (+) True rpl10
XM_034312119.1 mRNA upstream 119557 10930247 ~ 10931966 (+) True si:dkey-93l1.9
XM_034311611.1 mRNA upstream 124314 10919197 ~ 10927209 (+) False haus7
XM_034312190.1 mRNA downstream 3214 11079277 ~ 11088628 (+) True asb14b
XM_034312191.1 mRNA downstream 3214 11079277 ~ 11088628 (+) False asb14b
XM_034312187.1 mRNA downstream 14124 11090187 ~ 11103588 (+) False tasorb
XM_034312188.1 mRNA downstream 14124 11090187 ~ 11103588 (+) False tasorb
XM_034312189.1 mRNA downstream 14124 11090187 ~ 11103588 (+) False tasorb
XR_003403205.1 other upstream 54780 10996609 ~ 10996743 (+) True LOC113530991
XR_004579720.1 other upstream 138990 10872029 ~ 10912533 (+) False atp2b3b
TU299368 other upstream 200178 10848851 ~ 10851345 (+) False b4galt3
XR_004579736.1 other upstream 712318 10292606 ~ 10339205 (+) False kcnab2b
TU297603 other upstream 2425661 8621005 ~ 8625862 (+) False LOC113530359
TU299671 other downstream 155366 11231429 ~ 11237362 (+) True oard1
trnah-gug_14 other downstream 183784 11259847 ~ 11259918 (+) True trnah-gug_14
trnaf-gaa_28 other downstream 191548 11267611 ~ 11267683 (+) True trnaf-gaa_28
XR_003403199.2 other downstream 316529 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other downstream 323973 11400036 ~ 11415449 (+) False wu:fa11c10

Expression Profile