RNA id: XM_034312190.1


Basic Information

Item Value
RNA id XM_034312190.1
length 2788
RNA type mRNA
GC content 0.44
exon number 10
gene id asb14b
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11079277 ~ 11088628 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACATACCTTTTGACCTTTCAATGTGCAGTTTAGTGAATTTTATATAGGGGTTATCTTCTTGTAATAACACTCTATTAAATGATTTCCTGAATGCAATAATCAAGTCTTTCTTCTGGACTGAATTTTCTgtgcttaaaatatatttaaatccaCTGTGATCATTTGCATTCTTTGCTAAactatatattaaacatttagtgATAACTTACAGTTGCTTTGGGTACCACATTGAGCAACACTGCTTGTGTACTTTTGTTTGGAATACTTTACACATTTCCAAATGCATACTATGGCCTTCCTGTTGCCAGCCTTGATATCTTATAGCCCCAGTATGTCAGCTGGATGGCCAAGCTGaggttcagtgtgttcagtgtcagAGAGGGGTTGGCTGGTCTAGTCCCATGATTGcatatttttaactgtgttaGGATATAAATAGCTGTGTGTCTGCTACAAGCCTGAAACGCTCTGAGGTTataagtgcaaaacaaaacagcagtgtCCATTGCCGAAAGTGTGTAAGATGGAAGGACTGTATGATGAGGAAGAGTGGGATGAAGATGAAGCAACACAATACATGATTGAGCAGAGTCTGTCAGAATATGGCAAGTACAGAGATCAAACTCCTAGTGATCCCACTCTAGAATACATTGACCATGAAGAGATTTTTACAGCCATATGTGCAGCACTGCTGGACCATACATCCTCCTCTGTACATTCCGTATGTATGGTCACAGGAAATGAGGATGCCTTGAAGATTCTTGTGCAGAACAAGGCAGCCATGTCCATGGCAGACAACAGGGGATGGATCCCTCTGCATCAAGCAGCAGTACAGCAGAAAAGGAGCATTTTAGAGATCACTTTTTCAGCATCTCCTCAGGGGTCGGGTGAGTCCCGCACACTGAAAGGAGAGACTCCTCTCTTTCTTGCCGTTGTGAATGGTCTCAGAGTGAATGCTACGTTCCTGCTCCAGAATGGCTGCAACCCTGACTGTCAGAATGAGGATGAGGACACTGCATTAGTTGGGGCCATAAAGAATAATCAATACGACTTGGCCTCTCTTCTTCTACGTTATAATGGTACAGTGGACCAAAAATGCAGCCTCCAGAGAACTGCTCTGCATGAAGCATCTCTGTTGGGCCTAGAGGACTGTGTGTACCAGCTTCTCCAGGCTGGTGCCAACCCAGATGCCTGTGATGCCAATGAACATACACCTTTAGGACTTGCAGCCCAAGCTGGGCATTTGAATGTTGTGGAAATCCTACTACAGAAAGGGGCCAGCATATGGCCACAGCGTCACTCTGTAGAGTCTGTATCAGTGCTGTTTGAGGCGGCAGCATCTGGAAACCCTGATATAATCTCACTGCTGTTGGAGTATGGAGCTGACCCcaacactcccacacacacaggccatcTGCCCATTCACCGTGCTGCTTATCGAGGCCATCTGCTGGCACTGGAACAGCTGATCCCAGTGACTAAAAAAGAGGCCATTAAGGACAGTGGCATGAGCCCATTACATTCAGCTGCTGCAGGTGGACACTCTCAATGTCTTGAGCTGCTCTTGAATGCTGGATTTGACCCGAACTTCATGCTCCATCCACGGGTTCGCAGGAACTACGATGATGAGCGCAGATCAGCACTTTATTTTGCTGTGTCAAACAGCGATGTGCAGTCAGCGAGGTTACTGCTGAAAGCTGGTGCTATGCCAAACCAGGACCCTGTCAACTGTCTGCAAGTAGCCATGCGCCTGGGCAACTATGAACTGATCAACACGCTGCTGCGCTATGGAGCGAATGTGAACTACTACTCACGCGTAAATACTACACACTTCCCCTCGGCCCTACAATACGCAATAAAGGACGAGGTGATGCTCCGGATGCTGCTGAACCATGGCTATGATGTACAGCGCTGCTTTGACTGTCCCTATGGCCAGGGATCTCATGTCCCTGTGGACTATGAGGGCTGGAGCGTTTCTGTGATAAGAGATGTAGTGTTTTGTGAAGTGATAACAGTGTCCTGGCTCAAGCACTTTACAGGCCAGGTGGTAAGAATCTTGCTGGATTATGTCGACCATGTCACCTTCTGTTCCAAACTGAAGAGCATCCTGGCAGAACAGAAACAGTGGCCAGAAATATGCAGGATTCAAGaaaacacTCGAAGCCTGAAGCATTTATGTCGTCTTAAGATCCGTGAGTGCCTTGGTCGTCTGCGCCTTAGGGCTCCAGTTTTTATCAGCTTTTTACCTCTGCCAAACACTCTGAAGGACTATATCCGGTTCACAGAGTATGATATTTACAGCAAAGGAACTATGACGGACCTTGAATAAGacatttcgttttttttttttttcattgccatGCCACTTATTGCCACATGCCTTGATTGTTTattgtcaatcattttatagaaaGCATTGAAATCTTATTCAGCTCCACCCATTTAACCACTAGACACCTTTTTCCCcacaaatcttacctaatgtacctttaaacttcattattactaataaaatatttatagatcaagccacatttaaatgaaacatgtacatgctattttcatttttttactatCTTGACACACAGCACTATCATAGGAATTCAACAACAGAAACAGACAAATTCCCTGTCTATCTGCGTCCACTAAGCAAACGTGTTCTGTCTCAAATTGGATATTTGTGTACTCCAAACCGTTATTGTATACTAACACAAACCTGTATTGCTATTACACTTAatgttttcctattacagttcgAAATTAAAAAACCTTTCATGTAGCGTTCAAA

Function

GO: NA

KEGG:

id description
K10336 ASB14; ankyrin repeat and SOCS box protein 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299459 lncRNA upstream 39846 11038218 ~ 11039431 (+) True G252966
TU299445 lncRNA upstream 79457 10998081 ~ 10999820 (+) True G252955
TU299384 lncRNA upstream 117635 10949669 ~ 10961642 (+) True G252903
TU299383 lncRNA upstream 126095 10949669 ~ 10953182 (+) False G252903
TU299371 lncRNA upstream 132364 10945080 ~ 10946913 (+) True G252893
TU299500 lncRNA downstream 15511 11104139 ~ 11104527 (+) True G252996
TU299682 lncRNA downstream 156133 11244761 ~ 11245472 (+) True G253152
TU299681 lncRNA downstream 157270 11245898 ~ 11246862 (+) True G253151
TU299753 lncRNA downstream 282075 11370703 ~ 11372352 (+) True G253210
TU299755 lncRNA downstream 284367 11372995 ~ 11376620 (+) True G253212
XM_034312183.1 mRNA upstream 3 11051523 ~ 11079274 (+) True dnah12
XM_034312184.1 mRNA upstream 3214 11051523 ~ 11076063 (+) False dnah12
XM_026921369.2 mRNA upstream 64622 11009781 ~ 11014655 (+) True ognb
XM_034311874.1 mRNA upstream 72636 11004836 ~ 11006641 (+) True LOC113530834
XM_026921426.2 mRNA upstream 81844 10994877 ~ 10997433 (+) True rpl10
XM_034312187.1 mRNA downstream 1559 11090187 ~ 11103588 (+) False tasorb
XM_034312188.1 mRNA downstream 1559 11090187 ~ 11103588 (+) False tasorb
XM_034312189.1 mRNA downstream 1559 11090187 ~ 11103588 (+) False tasorb
XM_034312186.1 mRNA downstream 1560 11090188 ~ 11103588 (+) True tasorb
XM_026920771.2 mRNA downstream 1561 11090189 ~ 11103588 (+) False tasorb
XR_003403205.1 other upstream 82534 10996609 ~ 10996743 (+) True LOC113530991
XR_004579720.1 other upstream 166744 10872029 ~ 10912533 (+) False atp2b3b
TU299368 other upstream 227932 10848851 ~ 10851345 (+) False b4galt3
XR_004579736.1 other upstream 740072 10292606 ~ 10339205 (+) False kcnab2b
TU297603 other upstream 2453415 8621005 ~ 8625862 (+) False LOC113530359
TU299671 other downstream 142801 11231429 ~ 11237362 (+) True oard1
trnah-gug_14 other downstream 171219 11259847 ~ 11259918 (+) True trnah-gug_14
trnaf-gaa_28 other downstream 178983 11267611 ~ 11267683 (+) True trnaf-gaa_28
XR_003403199.2 other downstream 303964 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other downstream 311408 11400036 ~ 11415449 (+) False wu:fa11c10

Expression Profile