RNA id: XM_034312219.1


Basic Information

Item Value
RNA id XM_034312219.1
length 2957
RNA type mRNA
GC content 0.56
exon number 8
gene id LOC117599302
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24775086 ~ 24782044 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGGATAGTAACCAGCCAATCCCAGAGCAGGAGGCGGGGCTTGTTGGAAAGCGGGTGAAGGGGGTGGGATTAGCGTTCAATGGCACAGAGCGCGAGAGGAATGAGCTAATTTGTCTTTTTATGAACACAGTGGTGTTTTAAAGCAGAGTCGtgtaagatgaagtgtgtgtcGCTGCACCATGACTTCAGTCCTGGTGACGTCGTGTTTGCCAAAATGAAGGGATATCCTTTCTGGCCTGCCCggATTGCTGTTGGGAAGGCTCCAAGGAATAAGGTCCCAATCTTCTTTTATGGAACACACCAGacaACGTCTCTAGTCCCTAAGGACATTGTGCATTACTGGCCCAACAAAGAGAAATATGGGAAGCCCATCAAACGAGGAGGTTTTGAACAGGCCATGTGGGAGATCGAAAATGACCCCGGGGTCGGCCTCAAAGGTCAAAAGAAAGCCGATATGGTGAGGAAGGTGCAGGAGACGCGGAGGAAGGCGAGGAGTgtggaaaagaagaagaaaaacgaGGCTGACACGCCCACTAATGCTGCAACTCCGACAAAGAATGATAAAACACCTGTGAAAAACAGCACCACTCCGAATAAACCGTCCACCTCAGAGACCCCGACGAGGAGACAGACGCCGAGCCGGGACAGAGATGCCCGGAAGAAGACTGTAACACCTTCTGAAAAAGCGACAACTTCTGCTGATAACGCAACTCGTACTAAAAAACCCGCCCCACCCAAAAGGGTTGTCCTGGCCAAAAAAGCCATTGTTGCTAAGACGACGAGTGCAGCGAAGAAGAAGGACGCTGCCAGGAAGAAGATCCTTACCAAAGCGAAGATGGTCAAAGCCAAGAAGACAACGAAGACTAAGCTGAAGATAAAGCTGCCTATCAGAGTGGAAAAGAACAAGCCCCGTACCCCAGAGACTCGGCACCGGACCCCAGAGACTCGTCTTCAAACCACAGAGACTCGGCCCCCGATCTCCAAGGGTTGGGTGAAGATCACCGATCCACAGCTACAGAGCCCAGAGACTCGGCCTCGGATCTCCAAGGGTTGGGTGAAGGTCACCGATCCACAGTTAGAGGCCCCAAAGACTCGGCCCCGGATCTCCAAGGGTTGGGTGAAGATCACAGATCCACAGTTAGAGACCCCGGAGACTCGGCCCCGGCTCTGCAAGGGTTGGGTGAAGGTCACCGATCCACAGTTAGAGAACCCTAAGACTCGGTCCCGAACCCCAGCAACTCAGCCCCGGATTTCCAGAGGTTGGGTGAAGGTCACAGATCCCCAGTTAGGGAACGCTGAGACTCTGCCCCGAACCCCAGCGGCTCAGTGCCATGCCCCAGAGACTCGGCCCCGGAATTCCAAGGGATTGGTGAAGGTCACAGAGCCACAGCTGCGGACTCAGCTCAGAACTCCAGAGACGCCGCTCCAGACCACAGAGACTCGGCTCCCAGCCCCAGAGCCTCGTCTTCGAACCCCAGAGCCTCGCCAACTTGAACCCCAGAGCCTCGCCTCCCAGCCTCGCCTCAACCCCAGAGCCTCGCCTCCCAGCCCCCAGAGCCTCGCCTCCCAAGCCCCAGAGCCTCGGCTCCAGAGCCTCAGAACCCCAGAGCCTCGGCTCCCAGCCCCAGAGCCTCGGCTCCCAGCCCCAGAGCCTCGGCTCCCAGCCCCAGAGCCTCGGCTCCCAGCCCCAGAGCCTCGGCTCAGAACCCCAGAGACTCGGCTCCGGAATCCCAAGGTCACAGAGCCATGGCTACGGCGTCGAGAGACCCGGCTCCAAACCCCAGAGACCCAAGTAAAAACCACAGATGCTCGGCTGAGGGTCACAGAGACTCAGGTGCAAACCCCAGAGCCACGGCTCCAGAACCCAGGCACTCTGCTCCTGAACCCCAAGACTTGGCTGAGGGTCACAGTGCCACGGCTCCAGAACCCTGAGACTCTGCTCCATTGCTCCGAGACTCGCTTCCGCAACCCTGAGATTCGGCTTCAAAACCTCAAAATCTCAGCCTTAGGACACAAATTCTCAGCTCCCGAACCCCAAGGTGACTCTCCAGTTGAACCCCAAGATGCTGCTCGTGAATCCCGAGATGCAATTTCTGAACCTTCAAATGCAACTCCAGTGGAACCCCAAGTCACCACTCCAGTGGAACCCCAAGAGCCTGCTCCAGCTAAACCCAAAGTTGCTGTGCCAGTTGAAGCCCAAGATGTTACTCCACTTGAACCCCAAGTTGCTTCTCTGGTCAAACCCCAAGGCGTTGCTCTGAGTGAGATCTCAAccaggaaacaggaagcagaAGGTGAGGGAGAACGGAGAGTGCTGAGACGGAGGACAGAAGAGCAGAGGGATAGAAACgagaagagacagaagaaagagatggagaagaaACAGCCAGAGGATGAATGGAAGGATGGAGCGGAGCgaaggaagaagaaggaggagattATCCCAGCCATCACTGACACTGTCTCCAGCCCTGCAGCCTCGAGAAGGAAGCAACAGGAAGAGAAACTCCGCCCCTCAGAGCCAGAAAACAGCGAGGTGGGAAAGCGGAAAAGGCGCGAGGCGGACGAGGGAGGACAGAGAGTGCTGAGACGGAGGACGGAAGAGCAGAAGGGAAAGAGGGatagagaagaagaaacagagaaGAAGCAACTGGTGGTTGAGCGGAAGGATGGAgagaaggtgggaggaaaggAGTACaagggagagaagaggaagagagaggaggaggagaagaagaagaagagagaggaggagatggGGGAGAAGAAGCAGAGGAACGACGATGCAGTAGAGAAGGCGActgagaagaagagagaggaggagactaagaagaagaaaggtgaggaggagatggaggaggagacgggagagaagaggaagagagaggacgaagaggaggagaagaagagaaaggaggagacggagaagaggaagagagaggacgaggaggaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309036 lncRNA downstream 44543 24730292 ~ 24730543 (-) True G260897
TU309034 lncRNA downstream 46717 24725850 ~ 24728369 (-) True G260895
TU309033 lncRNA downstream 49709 24724222 ~ 24725377 (-) True G260894
TU309005 lncRNA downstream 76662 24697969 ~ 24698424 (-) True G260871
TU309021 lncRNA downstream 80840 24693335 ~ 24694246 (-) True G260885
TU309075 lncRNA upstream 61983 24844027 ~ 24864890 (-) True G260921
TU309098 lncRNA upstream 88670 24870714 ~ 24873747 (-) True G260942
TU309082 lncRNA upstream 179012 24961056 ~ 24964895 (-) False nfxl1
TU309120 lncRNA upstream 192671 24974715 ~ 24975307 (-) True G260962
TU309132 lncRNA upstream 260107 25042151 ~ 25042595 (-) False G260972
XM_034312218.1 mRNA downstream 433 24771260 ~ 24774653 (-) True LOC113530888
XM_034312203.1 mRNA downstream 10013 24745883 ~ 24765073 (-) False LOC113530579
XM_034312202.1 mRNA downstream 14391 24745883 ~ 24760695 (-) True LOC113530579
XM_026921395.2 mRNA downstream 29861 24734614 ~ 24745225 (-) True cfi
XM_026921207.2 mRNA downstream 69757 24702380 ~ 24705329 (-) True LOC113530848
XM_026921301.2 mRNA upstream 7714 24789758 ~ 24795423 (-) False si:ch1073-157b13.1
XM_034311728.1 mRNA upstream 7714 24789758 ~ 24795352 (-) False si:ch1073-157b13.1
XM_026921300.2 mRNA upstream 7714 24789758 ~ 24794897 (-) True si:ch1073-157b13.1
XM_026921302.2 mRNA upstream 7714 24789758 ~ 24794891 (-) False si:ch1073-157b13.1
XM_026911800.2 mRNA upstream 46488 24828532 ~ 24836728 (-) True si:ch73-106g13.1
XR_004579755.1 other downstream 266619 24501733 ~ 24508467 (-) False tent5ab
TU308938 other downstream 266753 24505628 ~ 24508333 (-) False tent5ab
TU308180 other downstream 1010923 23763674 ~ 23764163 (-) True G260310
XR_004579695.1 other downstream 1534740 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 2325659 22446030 ~ 22449427 (-) True G259306
XR_004579701.1 other upstream 5646 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309105 other upstream 98914 24880958 ~ 24883145 (-) True G260947
TU309088 other upstream 202415 24984459 ~ 24990531 (-) False si:ch211-149b19.4
TU309124 other upstream 208532 24990576 ~ 24999848 (-) True si:ch211-149b19.4
TU309131 other upstream 258747 25040791 ~ 25042595 (-) True G260972

Expression Profile