RNA id: XM_034312250.1


Basic Information

Item Value
RNA id XM_034312250.1
length 2433
RNA type mRNA
GC content 0.50
exon number 16
gene id pfkfb2a
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22986458 ~ 23004607 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGAAACAAAAACGACAAGCTGTAGCGAAGTCGCGCGCATCTCAACACGCCTTAGCTTTGCTTATAGTGAAGTTAAGAAAGTGAGAGCACACTGAcccgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttattcggAATAAAGTTACGGAGATAATTCGGTTTATTTCTTTCCTGCATGCAGGGGTGAATGACTTCACGGAGTGCCGGAGTCGCCTCGGGACGCGAGGACACGCCCCACGGCGGCGCAGCAGGAACTATGCAAAGAGCCATGGAGAGGAACAACCTGAAGAGCGAGCCAAGAACCAGCGAGAAGAAATGCTCGTGGGCGTCCTACATGACCAACTCGTCCACTCTGATCGTCATGATCGGCCTCCCCGCCAGAGGCAAGACCTACATGTCCAAGAAGCTGACTCGCTACCTCAACTGGATCGGAGTGCCCACGAAAGTGTTTAACCTGGGCGAGTACCGGCGTGAGGCCGTCCGCTCGTATAAATCCTACGACTTCTTCAGACACGACAACACCGAGGCCATGAGGATCAGGAAACAGTGCGCTCTCGAGGCTCTGCAGGACGTGAAGAGTTACCTAAACGAGGAGGGAGGACAGATCGCTGTGTTTGATGCCACGAACACGACTCGAGAGAGGCGAGATCTCATCCTGGATTTCGCCCAGGAGAACGCGTACAAGGTGTTTTTCGTGGAGTCGATCTGCGACGATCCAGATGTCATCGCTGAAAATATAATGGACGTGAAGGTGTCGAGTCCGGACTATCCCGAGAGAGACCGCGAGAGCGTCATGGAGGACTTTCTGAAGAGAATCGAGTGCTACAAAGTCACATATCAACCATTAGACCCAGACAACCATGACAAAGAGCGCTCCTTCATCCAGGTGATCAACGTAGGCCAGCGTTTCCTGGTGAACCGCGTGCAGGATTACATCCAGAGCAAGATCGTGTACTACCTAATGaacatccacatgcacaaacacaccatcTACCTCTGCCGTCACGGAGAGAGCGAACACAACGTGCAGGGTCTGATCGGGGGCGATGCGGGCCTGTCCGCTCACGGGAAAGAGtttgctATTGCGTTGCGGGATTTCATAGTGGACCACCGGCTGGTGGATCTGAAGGTGTGGACGAGCCAGCTGAAGCGCACCATCCAGACGGCCGAGGCTCTGGGCGTACCGTATGAGCAGTGGAAAATCCTCAATGAGATTGACGCTGGCATCTGTGAGGAAATGTCCTATGACATGATCAAGGAGAAGTATCCTGATGAATTCGCTATGAGGGATCAGGACAAATATCATTACCGGTACCCAGGAGGGGAGTCATACCAGGATCTGGTGCAGAGACTCGAGCCGGTGATAATGGAGCTGGAGAGGCAGGGCAGTGTGCTGGTTATCAGTCACCAGGCCGTCATGAGATGCCTGCTCGCATACTTCTTGGACGTTAGCGCTGATGACTTGACTTATCTGAGGTGTCCCCTCCATGTGGTGCTGAAACTCACGCCTGTGGCTTACGGTTGTAAAGTGGACATGTTCGACCTGAATGTTGAAGCCGTGAACACACACCGAAACAGACCACTCGCCAACAGCAAACACGAAGCTGTGATGAGGAGGAACAGCTTCACTCCCATGTCCAGTCAGGACCAGGTGAAGCGGCCCGAGGTCTTCAGCGTCGGAAACCCACCCTGCACCCCTCTGCCTCCATCGCTGAGCTCCACAGATGTCCCTGAGGCGCAGGAGACCGATGAACTCGACGAGAAACAAGAAGCACCGAACTGCTGGAGTCCTGGAGTTTGAGACAATGGACAGAAGTGAAGACACTCAAGCACTTAAATCTCCACCTGGATGAGTCAGACTCACACCTTCTTGCGTCCACAGCCAAGCCcagaaactctgtgtgtgtgtatgtgtgtgttgtgcgtgtgtctgtctgtctgtctgcctttatGGTTGGCTCATTTAAAGAAATAGTTCAGCAAAACAATCAAATGTATGCACTGCTCTCATTAGCATAAATGTAGTCAGTCAGCTGAcgcatgtttggtgtctgaggTTTGCTACGAGGCTAACATAGCTAACAATTCATGGACGACTATGAGACATAAATAAGTCCACAAATCTTCATATTCTTGCTTCAAACAACGATGTAAGGTACGTAATCTTGTTACAATAGCTGAGGAAGTccacatttacaaatttaagtttaaatttGAGCTAATATATCCCAATTATTTGATATTATCTTACAGTGCTCTTGAAATATCGCTTGTGATTGGTCGTTTatagtctccagtgtcagtgctttgtaaaagtcagaagtaaagcCATAAATTttccaaagtgctttacagtttctcggtaacatgacaagctgcgtttttgtcttattaagttcaag

Function

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0006000 fructose metabolic process biological_process
GO:0006003 fructose 2,6-bisphosphate metabolic process biological_process
GO:0003873 6-phosphofructo-2-kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004331 fructose-2,6-bisphosphate 2-phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307563 lncRNA downstream 13212 22969883 ~ 22973246 (-) False si:ch73-217n20.1
TU307467 lncRNA downstream 198479 22742744 ~ 22787979 (-) True G259724
TU307420 lncRNA downstream 329529 22653338 ~ 22656929 (-) True G259692
XR_004579704.1 lncRNA downstream 516705 22467663 ~ 22469753 (-) True LOC117599239
TU307005 lncRNA downstream 562216 22422592 ~ 22424242 (-) True G259337
TU307564 lncRNA upstream 1756 23006360 ~ 23010550 (-) True G259811
TU307557 lncRNA upstream 6245 23010849 ~ 23012362 (-) True G259809
TU307566 lncRNA upstream 12702 23017306 ~ 23018360 (-) True G259812
TU307595 lncRNA upstream 16757 23021361 ~ 23021570 (-) True G259838
TU307596 lncRNA upstream 17810 23022414 ~ 23022680 (-) True G259839
XM_034311897.1 mRNA downstream 5472 22961578 ~ 22980986 (-) True si:ch73-217n20.1
XM_026921336.2 mRNA downstream 164261 22813004 ~ 22822197 (-) True LOC113530928
XM_026921337.2 mRNA downstream 175837 22801924 ~ 22810621 (-) True LOC113530929
XM_026921205.2 mRNA downstream 224438 22758451 ~ 22762020 (-) True pdyn
XM_026921105.2 mRNA downstream 244904 22733952 ~ 22741554 (-) True LOC113530789
XM_026920929.2 mRNA upstream 15126 23019730 ~ 23126956 (-) False dlgap4a
XM_034312154.1 mRNA upstream 15126 23019730 ~ 23126956 (-) False dlgap4a
XM_026920926.2 mRNA upstream 15126 23019730 ~ 23126956 (-) True dlgap4a
XM_026920931.2 mRNA upstream 15126 23019730 ~ 23126955 (-) False dlgap4a
XM_026920930.2 mRNA upstream 15126 23019730 ~ 23126955 (-) False dlgap4a
TU306971 other downstream 537031 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 1031853 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 1631761 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 1816760 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 2118500 20830828 ~ 20867958 (-) False LOC117599256
XR_004579695.1 other upstream 193978 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 759070 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 1497129 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 1501024 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 1783086 24787690 ~ 24794897 (-) False si:ch1073-157b13.1

Expression Profile