RNA id: XR_003403132.2


Basic Information

Item Value
RNA id XR_003403132.2
length 613
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC113530300
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21600622 ~ 21602468 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGGCACGCTCCTTTGTGGAACAAACTTTCTtcaggaaataaaaaacattgtCATCATTTTACAAGCAGCTTTGTCGACTGAAGATGAATAGACCTAGACAGACACAACGCATTCGCGAAGAGTCTGCAGACTCCTCTGTGTGTTTGGCAGTTCTCAGGAGGATGCTCCAGAACATTTTCGCCTGTAGAGTCTGTGCAGGTATTGTTAGACCCCCAGTGGAGGAGACTGAAGCAGCAGGACCCCAAAGCTCAGTGCGTCCCTTCTTCTCTGAAACACCTCCACCGTCATAACAGCAGCATCAGCACCAGAGCCGTTTTATTCGccatatatatttacatgtgttgggaatttttcttggtgttcggtcacaacacaatacattcaacacagtttgcaacacacacatcacagacaagACAGCATACAACACAATTGCCATCCTAATATCCAAATATTGCACCGTAAGCAGACATTTGGAAGATTCAGTTGTCAGTtatagatgtagatgtagatgtagatgtagatgtagatgtagatacAGCAGCTGAATGCAGTTCAGAGTGATACACAGTGATACACTATATCACTATTGAGTGATAAACAATAAATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306346 lncRNA upstream 44184 21551918 ~ 21556438 (+) False G258753
TU306351 lncRNA upstream 89628 21499978 ~ 21510994 (+) True G258758
TU306345 lncRNA upstream 104057 21479232 ~ 21496565 (+) True G258753
TU306276 lncRNA upstream 214521 21384291 ~ 21386101 (+) True G258689
TU306264 lncRNA upstream 245892 21354440 ~ 21354730 (+) True G258680
TU306502 lncRNA downstream 147543 21750011 ~ 21752454 (+) True G258883
XR_004579749.1 lncRNA downstream 367910 21970378 ~ 21982618 (+) True LOC117599289
TU306718 lncRNA downstream 403862 22006330 ~ 22006530 (+) True G259086
TU306719 lncRNA downstream 404240 22006708 ~ 22007039 (+) True G259087
TU306725 lncRNA downstream 413643 22016111 ~ 22022398 (+) True G259093
XM_034311713.1 mRNA upstream 58195 21538045 ~ 21542427 (+) True LOC117599233
XM_034312085.1 mRNA upstream 65256 21521346 ~ 21535366 (+) True LOC117599284
XM_026920337.2 mRNA upstream 144774 21452268 ~ 21455848 (+) True LOC113530406
XM_034311569.1 mRNA upstream 162759 21402243 ~ 21437863 (+) False vdra
XM_026920094.2 mRNA downstream 9335 21611803 ~ 21626745 (+) False zmp:0000001174
XM_034311600.1 mRNA downstream 9694 21612162 ~ 21626745 (+) False zmp:0000001174
XM_034311601.1 mRNA downstream 10268 21612736 ~ 21626745 (+) True zmp:0000001174
XM_026920838.2 mRNA downstream 71869 21674337 ~ 21748403 (+) True LOC113530651
XM_026920839.2 mRNA downstream 71869 21674337 ~ 21745426 (+) False LOC113530651
TU306357 other upstream 58368 21538254 ~ 21542254 (+) False LOC117599233
TU306101 other upstream 369751 21228320 ~ 21230871 (+) False si:ch73-290k24.5
XR_004579743.1 other upstream 693372 20903105 ~ 20907250 (+) False ubxn10
TU305940 other upstream 695549 20903147 ~ 20905073 (+) False ubxn10
XR_003403172.2 other upstream 1086427 20510244 ~ 20514195 (+) False LOC113530729
trnal-uaa_2 other downstream 709338 22311806 ~ 22311888 (+) True trnal-uaa_2
XR_004579671.1 other downstream 1069157 22671625 ~ 22679550 (+) False LOC113530514
TU307769 other downstream 1769279 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other downstream 1769279 23371747 ~ 23383653 (+) False LOC117599309
TU307780 other downstream 1785070 23387538 ~ 23389314 (+) True G259993

Expression Profile