Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403150.2 |
| length | 1239 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 3 |
| gene id | LOC113530405 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 13201019 ~ 13202631 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU300905 | lncRNA | downstream | 59800 | 13141011 ~ 13141219 (-) | True | G254153 |
| TU300854 | lncRNA | downstream | 231008 | 12968364 ~ 12970011 (-) | True | G254107 |
| TU300857 | lncRNA | downstream | 267880 | 12932725 ~ 12933139 (-) | True | G254110 |
| TU300856 | lncRNA | downstream | 268599 | 12932219 ~ 12932420 (-) | True | G254109 |
| TU300848 | lncRNA | downstream | 277007 | 12923719 ~ 12924012 (-) | True | G254101 |
| TU300928 | lncRNA | upstream | 48509 | 13251140 ~ 13251353 (-) | False | oprl1 |
| TU301036 | lncRNA | upstream | 225659 | 13428290 ~ 13488493 (-) | True | G254270 |
| XR_004579752.1 | lncRNA | upstream | 261560 | 13464191 ~ 13465215 (-) | True | LOC117599295 |
| TU301365 | lncRNA | upstream | 387869 | 13590500 ~ 13590970 (-) | True | G254568 |
| TU301384 | lncRNA | upstream | 411797 | 13614428 ~ 13614663 (-) | True | G254587 |
| XM_034312114.1 | mRNA | downstream | 172132 | 12995420 ~ 13028887 (-) | False | myt1b |
| XM_034312115.1 | mRNA | downstream | 172132 | 12995420 ~ 13028887 (-) | False | myt1b |
| XM_034312112.1 | mRNA | downstream | 172132 | 12995420 ~ 13028887 (-) | False | myt1b |
| XM_034312111.1 | mRNA | downstream | 172132 | 12995420 ~ 13028887 (-) | False | myt1b |
| XM_026921362.2 | mRNA | downstream | 176014 | 12995420 ~ 13025005 (-) | True | myt1b |
| XM_034311548.1 | mRNA | upstream | 48701 | 13251332 ~ 13257726 (-) | False | oprl1 |
| XM_026920113.2 | mRNA | upstream | 48702 | 13251333 ~ 13283885 (-) | True | oprl1 |
| XM_026921347.2 | mRNA | upstream | 238153 | 13440784 ~ 13451374 (-) | True | tcea2 |
| XM_026920173.2 | mRNA | upstream | 423267 | 13625898 ~ 13632021 (-) | False | sla2 |
| XM_026920172.2 | mRNA | upstream | 423267 | 13625898 ~ 13632021 (-) | True | sla2 |
| TU300417 | other | downstream | 1041659 | 12158772 ~ 12159360 (-) | False | ptk6b |
| trnae-cuc_33 | other | downstream | 1059846 | 12141102 ~ 12141173 (-) | True | trnae-cuc_33 |
| XR_003403207.1 | other | downstream | 1308017 | 11892927 ~ 11893002 (-) | True | LOC113530993 |
| XR_003403206.1 | other | downstream | 1308599 | 11892348 ~ 11892420 (-) | True | LOC113530992 |
| TU300077 | other | downstream | 1632489 | 11556887 ~ 11568530 (-) | False | avpr2ab |
| XR_004579685.1 | other | upstream | 926585 | 14129216 ~ 14150581 (-) | False | LOC113530423 |
| XR_004579686.1 | other | upstream | 926585 | 14129216 ~ 14150581 (-) | False | LOC113530423 |
| XR_004579684.1 | other | upstream | 926585 | 14129216 ~ 14150581 (-) | True | LOC113530423 |
| XR_004579687.1 | other | upstream | 926585 | 14129216 ~ 14146831 (-) | False | LOC113530423 |
| TU301948 | other | upstream | 1496641 | 14699272 ~ 14704270 (-) | False | G255071 |
