RNA id: XR_003403152.2


Basic Information

Item Value
RNA id XR_003403152.2
length 1941
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id LOC113530427
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21588429 ~ 21599129 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGCTGCTGCTCGGTCGGTTCAGCAGTAGTGGCTGTTAGTTGGATTATTACCTGGATTATTAACCGGATTATTTTACATCTGCCTGCTAAATTCTTTATTCTTAATTTTATAAACTCTTATATACTCTTATTCTTAATTTTGAGCGGATTTGAGTTGTGGGATGTCAATGGAGAAGACAAAAACTGCAACATGGACACTTCCTCACTCATCTGAGGAAGACTCAGATGGGATCTACTTGGTCACTTAAGTTCAGTGAATTTATATCTTGCAAAAATATTCTTGATATCAAATCAAGCATTGGAACAAGGTTTACAGGGGATAACAGGCACACAACAGAGTGACAAGTCCATCACGAGTATCAACTGCAATGTATAAGGAGCCGTTGCAGAGACCCACTGAAAATACAGCAAATAGGAGTGTAGTGAAAGACCGGGATACACAGGAACCACGgtaGTTTACAGAGATCGATATCGGCAGTGCACTGTCTACTAGAGAACTGGCACATGAACTCTGAAGTGCACACATTTCAGCTATTTAGCCCCTCCCTCAAATCAGAAGGGAGAAATCGCGTCCAGGAGGAGGAGCGTCAGTGCCACGCTGAGGAGCCTCCACTTACGCTGCATCCGCTActcactgaaatgtttttttcccctaacgtttttttttttttttctcggaAAACACCTTACGCATATCAGCTGCATTTAAACTTCCTCTAACAAACAATAATGTAAAAAGTCACTGTCTGAGCCACGTGCCGGCCTCATCCTCAGGGCCAGGAGCGACGTATGATGATGTGCAAAATCAGCAGCAGCTTCGACTCTTGTGCGGTCACGAGATGAGACACCGCTTGTAGCCTGAACGCGGGCCATAATCCAAAGACGGGGTACACCATAATGACCgacaaaacaagcaaacacaGCTGTAGTCTGATGTAAAATTCAGTCGCGCTTCTTTGTATACGAGAAGGTCCATATCAAAACTCATAATAAAAGTCCatatcatcaaaaaaaaaaaaaaaaaaaaaaaaattacagctttgtTATGATGGATGTCGTTTTGATGTTCTGTTTGTGTTaggaccagagagagagagagagagagagagaaagaggggcgTGTTTTCCCGAGGTAAAACGTCACATGCAAACGTCCTCATTAAAGAGTCAGAGGAGTGACGTTTTCATTTGAACATATTCGAGCGAAATGTCTTTCTCCCGCCCACCGGGAGGAGGAGCATAAGTTATATAAGGGCCGACTCTCTTCTCCGCTGCTCAGTTGGCTGCTGAACGTTTGGCGAGTTTTAGCGGACAGGACGCGAACACTTTATCCTCCGACAAGCGAGGACGCGTCTTTGGAGAAACCAGGAGATTTCAGAAGGAGgaagcacttcacagttttTGGTTGGAATTTCTGCTGTGCAGCCATGTCTTTTACTTTCCTGTATCTAACAGAAAGATTTGtcattttcaattatttattgatgttaaaactttttttccccaaaatgttacatgtaaatgtttttgtcttaatGTGATTCAAACAAATGTTCTTTACTTCTccttttttgtgcagttttcgGATGAAAGAATATAGGCATGTGTCGGATGATGTACAATGTCTGGTTTCATCTTGTGATTCTAACAGAATAAAgatcataattaaaaaaatctctctctctgtcgctctctctctctctcacacacacacacacacacacacacacacaccgcacatgGCCCTACACATACTCCGACAGAGAAACGTTCATTGTGACTCAAACTGGAAAATCAGGTTGAGGTTGAGAATTTACCTGAGCTAATTTACCTGCTCCTGCTGTAACAAAGACGTTGGACAAAAACAAACCATGGATACACATCCTGCTATCAAATCaacagtctgtaaaaaaaaaaaacagcttattatatcttaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579674.1 lncRNA downstream 1790 21583715 ~ 21586639 (-) True LOC117599221
XR_004579673.1 lncRNA downstream 2549 21583715 ~ 21585880 (-) False LOC117599221
TU306366 lncRNA downstream 32969 21514647 ~ 21555460 (-) True G258771
TU306289 lncRNA downstream 213326 21374898 ~ 21375103 (-) True G258700
TU306265 lncRNA downstream 233742 21354439 ~ 21354687 (-) True trnaq-uug_7
TU306559 lncRNA upstream 150662 21749791 ~ 21750001 (-) True G258940
TU306562 lncRNA upstream 152276 21751405 ~ 21752452 (-) True G258942
TU306582 lncRNA upstream 199707 21798836 ~ 21799244 (-) True G258961
TU306588 lncRNA upstream 205967 21805096 ~ 21806760 (-) True G258966
TU306772 lncRNA upstream 417357 22016486 ~ 22021151 (-) False cpeb2
XM_034312021.1 mRNA downstream 92374 21494416 ~ 21496055 (-) True LOC117599277
XM_034311891.1 mRNA downstream 113587 21472718 ~ 21474842 (-) True LOC117599258
XM_026920132.2 mRNA downstream 283801 21297056 ~ 21304628 (-) True ednrab
XM_026921046.2 mRNA downstream 293656 21287614 ~ 21294773 (-) True LOC113530756
XM_026921215.2 mRNA downstream 315418 21259533 ~ 21273011 (-) True wu:fy63c09
XM_026920092.2 mRNA upstream 29003 21628132 ~ 21671352 (-) True LOC113530264
XM_026920093.2 mRNA upstream 32264 21631393 ~ 21671352 (-) False LOC113530264
XM_026920917.2 mRNA upstream 230136 21829265 ~ 21835197 (-) True ftr92
XM_034312131.1 mRNA upstream 259083 21858212 ~ 21883246 (-) True gpsm2l
XM_026920925.2 mRNA upstream 285536 21884665 ~ 21921592 (-) True ghrhrl
trnaq-uug_7 other downstream 233732 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 418731 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 720471 20830828 ~ 20867958 (-) False LOC117599256
TU305550 other downstream 1316522 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 1468480 20110463 ~ 20119949 (-) False mlh3
XR_004579748.1 other upstream 330046 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 846901 22446030 ~ 22449427 (-) True G259306
XR_004579695.1 other upstream 1599453 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 2164545 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 2902604 24501733 ~ 24508467 (-) False tent5ab

Expression Profile