RNA id: TCONS_00008803


Basic Information

Item Value
RNA id TCONS_00008803
length 208
lncRNA type intronic
GC content 0.39
exon number 2
gene id XLOC_004180
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 28196957 ~ 28200504 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aAGATATCCAAAGACACCGTTTTtgaagacagcagagAGTCACAGAGGACGAGCCCATCAGCAGGGGAACAGATATGTATGATTTATTTGTCACGTGTTTGGAACCGCACAATAGAGAAGAAACAACCGGTGGAGGGCTCTGATTTTATTTGAAGATGGTAGAGAAATTTACGAACAAACTTTAATGTactctgggtttttttttttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007994 lncRNA downstream 117253 28078643 ~ 28079704 (-) True XLOC_004178
TCONS_00007993 lncRNA downstream 117266 28078643 ~ 28079691 (-) False XLOC_004178
TCONS_00007985 lncRNA downstream 366622 27829230 ~ 27830335 (-) False XLOC_004176
TCONS_00008474 lncRNA downstream 387242 27800859 ~ 27809715 (-) True XLOC_004174
TCONS_00007976 lncRNA downstream 390190 27783758 ~ 27806767 (-) True XLOC_004173
TCONS_00008804 lncRNA upstream 218372 28418876 ~ 28424141 (-) True XLOC_004181
TCONS_00008805 lncRNA upstream 313238 28513742 ~ 28522344 (-) True XLOC_004182
TCONS_00007997 lncRNA upstream 321860 28522364 ~ 28525494 (-) False XLOC_004183
TCONS_00007998 lncRNA upstream 322050 28522554 ~ 28525153 (-) False XLOC_004183
TCONS_00007999 lncRNA upstream 322184 28522688 ~ 28525496 (-) False XLOC_004183
TCONS_00007996 mRNA downstream 39828 28127836 ~ 28157129 (-) True XLOC_004179
TCONS_00007995 mRNA downstream 48924 28127199 ~ 28148033 (-) False XLOC_004179
TCONS_00007991 mRNA downstream 110042 28052699 ~ 28086915 (-) False XLOC_004178
TCONS_00007988 mRNA downstream 146398 27919702 ~ 28050559 (-) False XLOC_004177
TCONS_00007990 mRNA downstream 234200 27939882 ~ 27962757 (-) True XLOC_004177
TCONS_00008005 mRNA upstream 390229 28590733 ~ 28614608 (-) False XLOC_004184
TCONS_00008007 mRNA upstream 433213 28633717 ~ 28639498 (-) True XLOC_004185
TCONS_00008008 mRNA upstream 442409 28642913 ~ 29082429 (-) False XLOC_004186
TCONS_00008009 mRNA upstream 443103 28643607 ~ 29082175 (-) False XLOC_004186
TCONS_00008010 mRNA upstream 484164 28684668 ~ 28911172 (-) True XLOC_004186
TCONS_00007992 other downstream 110033 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00007974 other downstream 477688 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 693637 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 693825 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007960 other downstream 1448528 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00008006 other upstream 390384 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00008022 other upstream 1452186 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 1609193 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 1695868 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008039 other upstream 1744426 29944930 ~ 29946640 (-) True XLOC_004197