RNA id: XR_003403153.2



Basic Information


Item Value
RNA id XR_003403153.2
length 1642
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC113530431
representative True

Chromosome Information


Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16781128 ~ 16782877 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GGGTTTTGGAAACCAGTGTTGGCGTGGGGATGATGAAGCGGGAGGCAGGGTTGCGACAACTCTAAAGGGCTTTTATTGTCACTTTTCTTCCTGGCCATGCTTTCCAGCACTTTCTGTCTTATGGTCTCACCCCAAGATACAccaacatatacacacacagtgcagttcAGCTCAGCTGTCTCTCGTGTGGCTCCCATCTCTTCCCTATATCTCCTCGCTGCCATTCACTAAAATCAGAGCCCTCATTTGTCAATCATCATCTATTCATAGTGCCCTCCATTAACAAACTGGCACTCAACTACACCCCCATTGACACAGTGAAATAAGCCTGGTCTACTGACAATTCTTTAAGCATTTTGCTCAAGTtagcaagttttttttctgtgttttaggtTGTGTTCATACGTATACATATAGTCAAATTAACATTGTGTTGGCCTTTCAGCTTTGCTgtgctttattaattattaatttgttaatgcCACTTTCAAATCTTTCTATACATCCCTATACAAACCAGAATCTTCAACTGATAATTAGAGCAATTACTGATTTTTTACAGAATCTCAAGACTTTTACAATtgattcaagattttttaaatttttttaaatagaaacaatcactgcaagttatatactgcatataattgtgtatgtgacaaataaaaaaaaaatcttgaatcagTTGTAAAGCATCTAAACATCTTGATGCCCCTTTAAGTACAGAATAAATTGAATTGTGTCATGGTAGCGGTGAATACTGAGCAGAACTATGATACCCATTAGCCCCTGCACatcacctgaccatgacactcACTATGTCACATGAATGTTCGCACCTGATTCACGTTTATATTTAATGAGCACTGTATTTTAAGCCCTGGTTTTCACATGTTCCattgtctagcttttgtcttttgttgtcATGGGCACCATCTGCCACCTCTGCTACTAAAACCTGACAGAAAGCTAGATCTAaccatggatgcagcagatTTGCTCAAGGGCCAGCAAGAACTCTTGGAGAAGAACTGCCTAATGTGGGAACAACAGGGAACTCAGAGGACGTTGCTACAGCTCATAGCTTCACTATGGGCATCGCCCCATCTCCCTGCTCCACTGAGGACATCACTATGCTGTCCAGCTCCatttcagcatgtgtgtgtctgtcatgGTAGTGGTGAATATGGAACAGAACTATGACACCCATCAGCCCCTGTACatcacctgaccatgacactcACTATGTCACATGAATGTTCACACCTgattcatgtttatgtttaaacagcactgtgtttAAAGCCCTGGTCTTCATATGTTCCATTGTGTAGCTTTTGTCTTCTGATGTTGGGTGCACCCTCTGGTCTATGTACAGTATTTGCCTCGAGATCATAGTTCATGTTTAAGATTCTATGATTtatgttgtttgtgttgttcatgttttgtgttaaaattaactttatttaaagaaatttcaGAAGAAACGGGCACCACTATTTCTGTCAGTACTACCATTACTTCTTTATTCTCCTCTCCTACCATCTCTAAATATTGAAATTGCTATATAACTACACGTACATATGAATATATTTCTGGACAGCTCACATGTAggctcataaaataaaaaaatattagtgcT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU303191 lncRNA downstream 143403 16636888 ~ 16637725 (-) True G256162
TU303189 lncRNA downstream 148680 16631392 ~ 16632448 (-) True G256160
TU303198 lncRNA downstream 151611 16628981 ~ 16629517 (-) True G256166
TU303194 lncRNA downstream 154511 16626242 ~ 16626617 (-) True G256164
TU303193 lncRNA downstream 154593 16626242 ~ 16626535 (-) False G256164
TU303233 lncRNA upstream 10040 16792917 ~ 16793280 (-) True G256197
TU303235 lncRNA upstream 11567 16794444 ~ 16794769 (-) True G256199
TU303249 lncRNA upstream 46338 16829215 ~ 16829435 (-) True G256212
TU303245 lncRNA upstream 68856 16851733 ~ 16852672 (-) True G256208
TU303239 lncRNA upstream 70120 16852997 ~ 16871152 (-) False dazap2
XM_034312254.1 mRNA downstream 18435 16708190 ~ 16762693 (-) False cs
XM_026921164.2 mRNA downstream 18524 16708190 ~ 16762604 (-) True cs
XM_026920437.2 mRNA downstream 86097 16647823 ~ 16695031 (-) True fam50a
XM_034311723.1 mRNA downstream 133427 16641460 ~ 16647701 (-) False si:ch211-207e14.4
XM_026920434.2 mRNA downstream 133427 16641460 ~ 16647701 (-) True si:ch211-207e14.4
XM_034311604.1 mRNA upstream 4924 16787801 ~ 16838649 (-) False si:ch211-210c8.6
XM_034311602.1 mRNA upstream 4929 16787806 ~ 16831861 (-) True si:ch211-210c8.6
XM_034311603.1 mRNA upstream 30507 16813384 ~ 16838649 (-) False si:ch211-210c8.6
XM_026920854.2 mRNA upstream 70051 16852928 ~ 16871164 (-) True dazap2
XM_026920775.2 mRNA upstream 342142 17125019 ~ 17171019 (-) False rapgef3
XR_003403156.2 other downstream 86098 16647823 ~ 16695030 (-) False fam50a
TU302676 other downstream 960974 15715035 ~ 15820154 (-) False znf512b
XR_003403204.1 other downstream 1293269 15487757 ~ 15487859 (-) True LOC113530990
TU301948 other downstream 2076858 14699272 ~ 14704270 (-) False G255071
XR_004579684.1 other downstream 2630547 14129216 ~ 14150581 (-) True LOC113530423
XR_004579669.1 other upstream 30507 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 893688 17676565 ~ 17695598 (-) True LOC117599224
TU303855 other upstream 1110204 17893081 ~ 17913277 (-) False kcng1
XR_004579746.1 other upstream 1502609 18285486 ~ 18300687 (-) False znf217
TU304189 other upstream 1726278 18509155 ~ 18513257 (-) False LOC113530839

Expression Profile