RNA id: XR_003403185.2


Basic Information

Item Value
RNA id XR_003403185.2
length 519
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC113530849
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24705287 ~ 24706115 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caaacacacacacacacacacacacaccgctcgcGCGACGGCGTTTGTAATGTAAACGGGTGAGACACGAATCACAGTTGAACAGGAGATACGCTGGTCTGTAAATCCTGGCCTGAAGAAATGTGATATGGAGCAGCAGGAGGACGTCTGGAGCAGTCTGGACGGTCCAGCAGCACAGCGAGGTTGTGGATCTGAAATATACTGAAACCTGTCGGGTTTAAAACAATAACCTACTCAAACTGAAACACCACGatacaaacactaacacactcctcAGCACGGTGGTGTTTGGATTTGAATGTGcttgtatttgatttttttgtgtgtgtgtgtgtgaaatttgtgCTGGGGTTTCGGCTAGGAAATGCTGAGAATATTTGAAATCAAACACTAGTTTCTTTAACCCCAAAACAGCACATATTCAAGATAAAACACCAAACATGCTTAAAACAGAAAActatcacatttacacacaaacaccgacacatttacacacaaacaccaacacatttacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308680 lncRNA upstream 88070 24616168 ~ 24617217 (+) False G260677
TU308681 lncRNA upstream 88070 24616168 ~ 24617217 (+) True G260677
TU308682 lncRNA upstream 88070 24616168 ~ 24617217 (+) False G260677
TU308684 lncRNA upstream 88070 24616168 ~ 24617217 (+) False G260677
TU308685 lncRNA upstream 88070 24616168 ~ 24617217 (+) False G260677
TU308703 lncRNA downstream 19732 24725847 ~ 24728397 (+) True G260691
TU308704 lncRNA downstream 19732 24725847 ~ 24728397 (+) False G260691
XR_004579759.1 lncRNA downstream 29608 24735723 ~ 24736373 (+) True LOC117599308
TU308715 lncRNA downstream 39666 24745781 ~ 24751808 (+) False G260697
TU308717 lncRNA downstream 39666 24745781 ~ 24751808 (+) True G260697
XM_026920325.2 mRNA upstream 6854 24693031 ~ 24698433 (+) False aimp1b
XM_034311635.1 mRNA upstream 6854 24693127 ~ 24698433 (+) True aimp1b
XM_026920324.2 mRNA upstream 6854 24693127 ~ 24698433 (+) False aimp1b
XM_026920328.2 mRNA upstream 6854 24693127 ~ 24698433 (+) False aimp1b
XM_034311636.1 mRNA upstream 6854 24693148 ~ 24698433 (+) False aimp1b
XM_026921435.2 mRNA downstream 8902 24715017 ~ 24725235 (+) True sgms2b
XM_034312246.1 mRNA downstream 8914 24715029 ~ 24725235 (+) False sgms2b
XM_034312221.1 mRNA downstream 91114 24797229 ~ 24801608 (+) True LOC117599303
XM_034312222.1 mRNA downstream 95777 24801892 ~ 24802529 (+) True LOC117599304
XM_034312223.1 mRNA downstream 97056 24803171 ~ 24804413 (+) True LOC117599305
XR_004579660.1 other upstream 70742 24624937 ~ 24634545 (+) False ddx58
TU308384 other upstream 436020 24268577 ~ 24269267 (+) True G260483
TU308306 other upstream 672563 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 1315973 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 1321634 23371747 ~ 23383653 (+) True LOC117599309

Expression Profile