RNA id: XR_003403190.2


Basic Information

Item Value
RNA id XR_003403190.2
length 3033
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC113530885
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17317638 ~ 17320983 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGCTGCTGAAATACAACAACCATCAAACACTGGAGGCAGTGGCCTTTCAAAAGAAGAGCTCAACATTACAAAGTCTGTGACTATGTCCAACCCAGAATACATAGTCTACACAGACAGTTAGCTTGAACAGGCGCGACCCTCCTACTTCAAGCAGAAATGGCTGGGGACAGAGCACATTGTGGCCTTATCCAAGGAGCTCTTCTGCTGACTCATAAGAAACACTATGACTAAAATGATTACAATTGCAAAAGCCACAGAGGACTCCAGATACCCCAGCAAACATGAGGTCAAAGTGATTGGTGGAGTACTACCCAGTGATGAAAGACAGGTCATCAAACATTGAGTGGctTATGAAGAGAGTCTCAAATGTCAGAAGTCCAAGGAAGGCCAAGGTTCCTCCTTTGAAGGAACCATGAGAGGATGGGGAAATCCATGCAGATGTTGCAACAAGTGACTACAGTGGAGATTCCAGTGCATCACCATTAGTCTGGAGTAATCATCTGTTAGAGCCAGCACCCCAAGCAACACCAGGATAGCAGTGATGAAGCATGTATTTTTAAGGGAGCAAGACCGACAAAGATTCTAGTTGCTTACCCTTGTTTCAGAGATGTGGATCACGTCCCGGATGACCTGCGGAGAATTATTCAACCAAACAATTCCTGGTACATTTGAAGGACAGATGGGAAAGCTTCTACTCAAAGGTCTAGTTTTATAGTGTCATGAAGAAAGCCATATGAAGCCTCCAAAAACTTTGAATGGAGGTGAAGACACAACACCTTGATTTGTCcaagtttatattttgagatCTCATGATGAGTGGGAATTAATGGTACTGCCTTGTATTGTGCCTTTTCTGTTAAACCAGTGGAGCATACCACAGCTGTGTTCAGAGCCCTGCCACTGCACTTCCTATCCAGCACCTTGATGTAGAATTATCATTTGACCATTCAGTGTCAAAGTGTGTATTAGTCCAGGTCaaaatgtgtattatttgtggtgtttttctaatcttgtacaTTCCTATGACAACGACCCCTGTGTTGTCTAGTTGTGCTCGTCTCTGAAGACAACAGCATGATCACCGTTGGAAGCACGCCAGTGACCACACTGCTAATAGTATTGCAAAGGGAAATTCTCCAAGATTCCATCCATGACAGAGATTCAACCCCCACCTACAAAAAAGCCCTTGGTGAGTGGAGTCTCATGTCTGACAAAGTTGTGTTTCAGAAAAAGTTTCAGAAAAAGTCACAAGTCATCAGCCTCACCTCAGGCTACCACCCTCAGTCCAATAGCCAAGTGGAGCGGGCCAGTCAGGAAGTAGGAAGATTTCTACAGTCCTTCCGTGCTTCTAACCAAGAAGATTTGGCCCACTTCCTCCCATGGGCCAAATATGCCCAAAATTCTCTGAGGCATTCAGCCACCCAGTTTACCCCCTTTCCAGTGCATCGTCGGTTACTAAGCTCCCCTATTCCCAAGGACAGTCCTGACAGTCCTCAATGCAAATGAACTTTGCAAAGTATTCGTTCAGCTCTGTTTCTCATCTGACATACCAAGCCTTTGATTCATGTTTACTACTTCTGGTTTTGACCcacttttttctcatttcatgaTTATAGTCTCATCTTCTGAATACCTGTTAGTACATCGCATAACCCTTTGCCTGATTCTGGATTCTGGCCTTGACAGAATCcagtctttatttttaataaaagcatttgcCACAATTGTCGCTGTATCTGCCGCATAACAGAACAACCAGAAGACAAACCTTTAAGATATTGTACTATATTTTATAAtcttataaattataatataaatttataattgtatattttataaaagtcaACACTGTGTCTAAATATGACGAATATTAAAAGCCACACATTGATGAACTGCTTGAACAGATATGCATGGCTCACTTTTATTCGACACTGAATTTAACCAAGGCgtattggcagattcccttgactCAAATAACCTTAAAAATGGCTTTTTCCACTCTGTTTAggttacaccaatttgtcaccctTCTGTTCTCATGGACAAAATACTCTCATGGACAAAATACTCCACATGCACAGTACATATGCTTCTCCGTATTTAGATGATGTAgtcatttatagtaatgattggcagcggCATTTACAACATCTAAGAGCTGTCCTAAAATCCTTGAGATGAGCaggactcacagcaaacccaaagaagtgtgcagtTGGACAGGTGGAAGTAAGGTATCTGagcttccacttgggccatgggctGGTGTGTCTGCCCAAACAGGCTAAAAGCTATAAgaattctataataaatataatagcttGAATAATGGTGTGTTGTGACTGACTTCCCCCactatactaaaaataaaatcatggcTATGCTTAATGGACCCACTTTGAGGAAGACTACTCAAGGAAACGTAAATCATTACCTGGTTGTCTACTGAAACTTGATTAGCTTTAATGAAATCTGTAAACCTGaacctgaaaaacacaaaccacTGTGGGAAAGATTGCCCAGTAATGGTTAAACAGGTTTCTAAAATGATATATAGTGAGCTTAATTTTAAAATCCAAGAAAGGCACATTGCAAACAGTGAGAAATTCAGGCATTACATGCAGCGCATGGACAGATGCTAATTGGCCCACAGCTTCTCTCTTAGAATGGATGATAGGTGGCCCACTGGCCTGCATGTTgcaattttttcttttaccttATGGTGGTAGCACACTGTGTTAACACATATAGCTAAATTGCAAGAGCCTTTTTTCTCTGACACCTGCAAATTAATGTACTGTATGATATTTAGTCATGGCTACAGACAAATGCACAAAGTTAACAGTGAGAAGGGGTGATTTCAAATGTGTGTGCCTCATATGTCAAGAGACTGTTGCAGTAATTGAGGAATTTAATATCATGAAAcattatgaaacaaatcatgggtgatgcaaaaaatattcagaagaTGAGAGGGCAGCTGAAAGCtaaggtccataagtatttggacagtgacatgaTATTTGTAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303469 lncRNA downstream 76769 17214844 ~ 17240869 (-) True G256413
TU303456 lncRNA downstream 124566 17191099 ~ 17193072 (-) True G256403
TU303445 lncRNA downstream 140408 17175684 ~ 17177230 (-) True G256393
TU303416 lncRNA downstream 211270 17103732 ~ 17106368 (-) True G256368
TU303361 lncRNA downstream 268639 17048652 ~ 17048999 (-) True G256313
XR_003403191.2 lncRNA upstream 439 17321422 ~ 17323140 (-) True LOC113530886
TU303641 lncRNA upstream 302202 17623185 ~ 17623422 (-) True G256567
TU303646 lncRNA upstream 305336 17626319 ~ 17628461 (-) True G256569
TU303643 lncRNA upstream 305571 17626554 ~ 17628461 (-) False G256569
XR_004579716.1 lncRNA upstream 345685 17666668 ~ 17669629 (-) True LOC117599248
XM_034311879.1 mRNA downstream 90904 17208885 ~ 17226734 (-) True LOC113530577
XM_026920775.2 mRNA downstream 146619 17125019 ~ 17171019 (-) False rapgef3
XM_026920776.2 mRNA downstream 157304 17125019 ~ 17160334 (-) False rapgef3
XM_026920774.2 mRNA downstream 157305 17125019 ~ 17160333 (-) True rapgef3
XM_026920854.2 mRNA downstream 446474 16852928 ~ 16871164 (-) True dazap2
XM_026920713.2 mRNA upstream 409729 17730712 ~ 17735744 (-) True LOC113530575
XM_026920241.2 mRNA upstream 426299 17747282 ~ 17754344 (-) True taf8
XM_026921214.2 mRNA upstream 434609 17755592 ~ 17756555 (-) True g0s2
XM_026920975.2 mRNA upstream 445226 17766209 ~ 17778850 (-) False camk1gb
XM_026920974.2 mRNA upstream 445226 17766209 ~ 17778675 (-) True camk1gb
XR_004579669.1 other downstream 486379 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_003403156.2 other downstream 622608 16647823 ~ 16695030 (-) False fam50a
TU302676 other downstream 1497484 15715035 ~ 15820154 (-) False znf512b
XR_003403204.1 other downstream 1829779 15487757 ~ 15487859 (-) True LOC113530990
TU301948 other downstream 2613368 14699272 ~ 14704270 (-) False G255071
XR_004579680.1 other upstream 355582 17676565 ~ 17695598 (-) True LOC117599224
TU303855 other upstream 572098 17893081 ~ 17913277 (-) False kcng1
XR_004579746.1 other upstream 964503 18285486 ~ 18300687 (-) False znf217
TU304189 other upstream 1188172 18509155 ~ 18513257 (-) False LOC113530839
XR_004579689.1 other upstream 1616927 18937910 ~ 19064582 (-) False lrp1ab

Expression Profile