Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579667.1 |
| length | 524 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 4 |
| gene id | LOC117599216 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 11946332 ~ 11974544 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0001708 | cell fate specification | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU300200 | lncRNA | upstream | 5095 | 11939079 ~ 11941237 (+) | True | G253548 |
| TU299948 | lncRNA | upstream | 45968 | 11892150 ~ 11900364 (+) | True | G253367 |
| TU299949 | lncRNA | upstream | 45968 | 11892150 ~ 11900364 (+) | False | G253367 |
| TU299946 | lncRNA | upstream | 50195 | 11892150 ~ 11896137 (+) | False | G253367 |
| TU299950 | lncRNA | upstream | 50195 | 11892150 ~ 11896137 (+) | False | G253367 |
| XR_004579668.1 | lncRNA | downstream | 17096 | 11991640 ~ 11992121 (+) | True | LOC113530280 |
| TU300249 | lncRNA | downstream | 38735 | 12013279 ~ 12013495 (+) | True | G253593 |
| TU300257 | lncRNA | downstream | 108499 | 12083043 ~ 12083656 (+) | True | G253599 |
| TU300495 | lncRNA | downstream | 391516 | 12366060 ~ 12366461 (+) | True | G253798 |
| TU300538 | lncRNA | downstream | 427070 | 12401614 ~ 12406705 (+) | True | G253835 |
| XM_026920869.2 | mRNA | upstream | 38414 | 11900398 ~ 11907918 (+) | True | tfip11 |
| XM_034311550.1 | mRNA | upstream | 124572 | 11808991 ~ 11821760 (+) | False | pm20d1.2 |
| XM_034311551.1 | mRNA | upstream | 124572 | 11808992 ~ 11821760 (+) | False | pm20d1.2 |
| XM_026921152.2 | mRNA | upstream | 124572 | 11808993 ~ 11821760 (+) | True | pm20d1.2 |
| XM_034312005.1 | mRNA | upstream | 137630 | 11785870 ~ 11808702 (+) | True | lemd1 |
| XM_026921106.2 | mRNA | downstream | 47112 | 12021656 ~ 12023438 (+) | True | bhlhe23 |
| XM_026921197.2 | mRNA | downstream | 115003 | 12089547 ~ 12112153 (+) | True | dnajc5ab |
| XM_026920441.2 | mRNA | downstream | 139078 | 12113622 ~ 12121372 (+) | False | trim101 |
| XM_026920438.2 | mRNA | downstream | 139078 | 12113622 ~ 12118875 (+) | False | trim101 |
| XM_026920439.2 | mRNA | downstream | 139078 | 12113622 ~ 12118875 (+) | False | trim101 |
| TU299947 | other | upstream | 45968 | 11892150 ~ 11900364 (+) | False | G253367 |
| XR_003403199.2 | other | upstream | 530883 | 11392592 ~ 11415449 (+) | False | wu:fa11c10 |
| XR_003403198.2 | other | upstream | 530883 | 11400036 ~ 11415449 (+) | False | wu:fa11c10 |
| trnaf-gaa_28 | other | upstream | 678649 | 11267611 ~ 11267683 (+) | True | trnaf-gaa_28 |
| trnah-gug_14 | other | upstream | 686414 | 11259847 ~ 11259918 (+) | True | trnah-gug_14 |
| XR_003403157.2 | other | downstream | 139078 | 12113622 ~ 12121372 (+) | True | trim101 |
| TU300294 | other | downstream | 166943 | 12141487 ~ 12143527 (+) | False | ppdpfb |
| XR_004579730.1 | other | downstream | 392199 | 12366743 ~ 12384574 (+) | False | LOC113530266 |
| XR_003403145.2 | other | downstream | 862507 | 12837051 ~ 12850995 (+) | False | rbbp8l |
| XR_004579688.1 | other | downstream | 2095684 | 14070228 ~ 14072158 (+) | False | wfdc2 |
