RNA id: XR_004579673.1



Basic Information


Item Value
RNA id XR_004579673.1
length 727
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC117599221
representative False

Chromosome Information


Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21583715 ~ 21586639 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GACCTGCTGAGCTGCGCTTTTACCCGACTTTAAGCGAATAGTCTACATTATCCGTCGTAGGGCGACATATGCGTCAATCGTCGTAAGACCCCGTCGTAAGGCGAATGCATCAAATTTCTGTTGATGTTTTAAGATTGTGACTAGAACCACTCAACACATCTGTGACGAAGAGTGCTACTTCATCATGGACGCACCGTCACACCTCACTGAGATTATCAGCAGTCTCATTGAGGAACAACAAAGGCAAAATCAGCGTCTGGAGGCCCTGCTACAAGAAGAGGCAAAGACCAAACAGATGCTCCACAGAATCATCCAGCAAGTGGAATCTAAAGATTCCAAGAAAGCTGTCTCGCTATCAGAGCAACATCGCCAGAGGTTTCGCTCCTTGGCCCTCAGTGAGGTCGGCGATCTATTTAAATTTGTACAGCAGCTCCAATTCCACTGTCAGAAGTGGTTGCTGGCTGAGGATTGGGACTGTAGCAGGATTGTGGAGCAGTTGGTAATAGAGCAGTTTATCAAGCAGCTTCCAGAAGAGACTGCCCACTGGGTTCAGCTCCACCAACCAGAAACACCAAATGAGGCCATTCAGTTGGCAGAGAACCACagggcatctctctctctctccccttcaaCATCTGCCTCAGTGGGATGATGCTTTGGGCACACTGTGTGAAGGACCTCCAATCCTGATATTGCTCAACTTCCAGTTTCTTCAATGTCTTCCATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU306366 lncRNA downstream 28255 21514647 ~ 21555460 (-) True G258771
TU306289 lncRNA downstream 208612 21374898 ~ 21375103 (-) True G258700
TU306265 lncRNA downstream 229028 21354439 ~ 21354687 (-) True trnaq-uug_7
TU306206 lncRNA downstream 342655 21238036 ~ 21241060 (-) True G258626
TU306176 lncRNA downstream 416117 21153906 ~ 21167598 (-) True G258596
XR_003403152.2 lncRNA upstream 2549 21588429 ~ 21599129 (-) True LOC113530427
TU306559 lncRNA upstream 163911 21749791 ~ 21750001 (-) True G258940
TU306562 lncRNA upstream 165525 21751405 ~ 21752452 (-) True G258942
TU306582 lncRNA upstream 212956 21798836 ~ 21799244 (-) True G258961
TU306588 lncRNA upstream 219216 21805096 ~ 21806760 (-) True G258966
XM_034312021.1 mRNA downstream 87660 21494416 ~ 21496055 (-) True LOC117599277
XM_034311891.1 mRNA downstream 108873 21472718 ~ 21474842 (-) True LOC117599258
XM_026920132.2 mRNA downstream 279087 21297056 ~ 21304628 (-) True ednrab
XM_026921046.2 mRNA downstream 288942 21287614 ~ 21294773 (-) True LOC113530756
XM_026921215.2 mRNA downstream 310704 21259533 ~ 21273011 (-) True wu:fy63c09
XM_026920092.2 mRNA upstream 42252 21628132 ~ 21671352 (-) True LOC113530264
XM_026920093.2 mRNA upstream 45513 21631393 ~ 21671352 (-) False LOC113530264
XM_026920917.2 mRNA upstream 243385 21829265 ~ 21835197 (-) True ftr92
XM_034312131.1 mRNA upstream 272332 21858212 ~ 21883246 (-) True gpsm2l
XM_026920925.2 mRNA upstream 298785 21884665 ~ 21921592 (-) True ghrhrl
trnaq-uug_7 other downstream 229018 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 414017 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 715757 20830828 ~ 20867958 (-) False LOC117599256
TU305550 other downstream 1311808 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 1463766 20110463 ~ 20119949 (-) False mlh3
XR_004579748.1 other upstream 343295 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 860150 22446030 ~ 22449427 (-) True G259306
XR_004579695.1 other upstream 1612702 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 2177794 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 2915853 24501733 ~ 24508467 (-) False tent5ab

Expression Profile