RNA id: XR_004579703.1


Basic Information

Item Value
RNA id XR_004579703.1
length 1765
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id LOC117599238
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9944562 ~ 9946932 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTCCTTGTCACGTTGACTTTGAGTCACGGCGAGCATGCGTGAGCCGCTGTGTGAGCTGCTTCACACTGCGTCTGCTGATATGTTCATTGAGAGGGCTGCCTGTAGAGATAAGAGGCTGAAAATGGGCAAGGCGTAAACAGCTTCAGACCTAAAGCTGCAAACAACTGCATCTCAAACCCATGTTGCTgtgttcaaaaataaaacaaaaggggTTTTGGCACCACACCGTCAGTGGGAGCTGCCAGACCATAAGTGTAGTCTCATTGGCTCCAGAGGAAGTAGAAGAGGAGGAGCCAGCCGCATTGAGTCTGCGGAATCCTCTTCCTCCTGATATAACGGCGAATGACATGACCCTTTCTCTCCGTGTTCCATCTTTTGTGGAAGGTCCTGGTCCCCTGACCCAAACCTCGGGGTCATCACTCAGCTCATAGATAGAACCATCCTCCGTAGTGTGCTCCAGAGACTCCTGGGAGGAATTGGATACCTCTTCAGGCTGAGCGGTCAGAAGCTTGCCAGGGAGCTGGGAGGTGGAGCGGAGGTGGTATTGAAGCAGCACCCCTTTGGGTTTGGCTTCTTTCTGAGACAAACCTTCtatctgctgctgttgtagtgaTTCCTGAGATGAGTGGCTCAGGTCTTCTCCTCCACTACCTGAATCAGTCCCATCAGCCAGAGAGTCCCGCTTCAACAGGTCAGGGGACAAAGTACTGGACGTGGCCACAAGGATGTCCACAGGGCCGCTGTGAGCGTTGAGCGAGGTCATCGCTTTGCCTGGAGAAGACAGAGAGGATTGAAGTGAGATTACATTCAGACTTATTAACACCAGGCTGAGCTCATGGATACTCACCTGTTATTTTCGGGATGCCCTCCAGCTTAGGCACTGGCAGGGTGATGATCATACCCTGGGCCGTGCCCACCCACAGGAGACCCTGGCAGATGAGCAGGCTagtgacacacacagtctgacCTTTAAGAGAACAAACGGCTACGGTGTCATTgcggtggtttttttttcacctttatttttattcagttttgcaTCCATTTCAAGAGAAACACAGGTAaggtagagaaaaaaagactaagGGAAAAAGGGTGGGGGGACAATGTCTGTCTAGAACTTAATCTTCCATTTTTACAGACACTACATCAAGAAGCTCAGAAATAGTGATCATATTACATACATCAAGAATCACAAAGGGTAACATAGCACATCAAGACTCCCTCATTTCTAAATTTCGTTTACAATTTCAATCCATTGCATTTTTGTTGGGGGTTCCTGTTGCATCCACCTTCTTGTTATGGCCTTTTTACTAGCTACCAGTAGTATTTTAAGtaggtatttattatttttccccactAGTTGAAGCACTTTACCGAGGTAAAGGTACAACCATGAAAGCACAATTATAATTCCAAATATATCCTCTATTACTTTTCTATTATCTCCCTCCAGTACAATTCAATTATTGGGCATCCCCAAAATATATGGAAGTGGTCAGCCATGTGGGCGCCACACTGTCGCCAGCATAGCCCCTGAATATGCCGTTTATCTAGTAGTGCTTTTCTTTTAGAGGTATAGAAAAACCTGACCAGACATTTCCAGTTGAAGTCGTTGCAGTGTTTTAAAAGTCTGCCATCAACTGTAAGGAACAGATTGTTAAAGGTTTTAATCAGATCTGAAATGTGGTAATAGTGGAATGTTTTAGTTAACCTTTCTATattgacatttaaaaataaaatgcaggcATTTCTCTATGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298408 lncRNA upstream 214507 9708095 ~ 9730055 (+) True G252116
TU298391 lncRNA upstream 288169 9654882 ~ 9656393 (+) True G252102
TU298258 lncRNA upstream 400922 9542129 ~ 9543640 (+) True G251988
TU298189 lncRNA upstream 505766 9438560 ~ 9438796 (+) True G251921
XR_004579723.1 lncRNA upstream 536864 9406507 ~ 9407698 (+) True LOC117599255
TU298668 lncRNA downstream 51752 9998684 ~ 10001448 (+) True G252336
TU298760 lncRNA downstream 217776 10164708 ~ 10165255 (+) True G252389
TU298798 lncRNA downstream 219617 10166549 ~ 10166791 (+) True G252422
TU299103 lncRNA downstream 593515 10540447 ~ 10540656 (+) True G252674
TU299104 lncRNA downstream 594338 10541270 ~ 10541479 (+) True G252675
XM_026920748.2 mRNA upstream 24438 9873011 ~ 9920124 (+) True vps13d
XM_026921227.2 mRNA upstream 77485 9856373 ~ 9867077 (+) True lrrc38a
XM_026921102.2 mRNA upstream 96593 9791778 ~ 9847969 (+) True ephb2a
XM_034312162.1 mRNA upstream 96593 9791778 ~ 9847969 (+) False ephb2a
XM_026921022.2 mRNA upstream 215793 9679602 ~ 9728769 (+) True phc2a
XM_026921280.2 mRNA downstream 39650 9986582 ~ 9997859 (+) False rcc2
XM_034312088.1 mRNA downstream 39984 9986916 ~ 9997859 (+) False rcc2
XM_026921278.2 mRNA downstream 39987 9986919 ~ 9997859 (+) True rcc2
XM_026920888.2 mRNA downstream 56754 10003686 ~ 10015983 (+) True rnf207b
XM_026920890.2 mRNA downstream 56754 10003686 ~ 10015983 (+) False rnf207b
TU297603 other upstream 1318700 8621005 ~ 8625862 (+) False LOC113530359
TU297540 other upstream 1586462 8352789 ~ 8358100 (+) False spen
XR_004579705.1 other upstream 1607063 8312773 ~ 8337499 (+) False atp13a2
XR_004579706.1 other upstream 1607063 8313817 ~ 8337499 (+) False atp13a2
TU297455 other upstream 1703795 8240018 ~ 8240767 (+) False si:ch211-197l9.2
XR_004579736.1 other downstream 345674 10292606 ~ 10339205 (+) False kcnab2b
TU299368 other downstream 901919 10848851 ~ 10851345 (+) False b4galt3
XR_004579720.1 other downstream 925097 10872029 ~ 10912533 (+) False atp2b3b
XR_003403205.1 other downstream 1049677 10996609 ~ 10996743 (+) True LOC113530991
TU299671 other downstream 1284497 11231429 ~ 11237362 (+) True oard1

Expression Profile